Conservation of cofitness between Psyr_3856 and Psyr_4567 in Pseudomonas syringae pv. syringae B728a

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_3856 Helicase c2 1.0 Psyr_4567 Protein of unknown function UPF0075 0.52 12
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_3856 Helicase c2 1.00 Psyr_4567 Protein of unknown function UPF0075 low > 86
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_2942 ATP-dependent helicase DinG/Rad3 0.74 Pf6N2E2_4838 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_05425 ATP-dependent DNA helicase DinG 0.74 AO356_14500 anhydro-N-acetylmuramic acid kinase low > 104
Pseudomonas simiae WCS417 0.93 PS417_06510 ATP-dependent DNA helicase DinG 0.72 PS417_25650 anhydro-N-acetylmuramic acid kinase low > 88
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS06540 ATP-dependent DNA helicase DinG 0.72 PFLU_RS27305 anhydro-N-acetylmuramic acid kinase 0.22 29
Pseudomonas fluorescens SBW25 0.93 PFLU_RS06540 ATP-dependent DNA helicase DinG 0.72 PFLU_RS27305 anhydro-N-acetylmuramic acid kinase low > 109
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_4624 ATP-dependent helicase DinG/Rad3 0.74 PfGW456L13_1235 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_17020 ATP-dependent DNA helicase DinG 0.73 AO353_07145 anhydro-N-acetylmuramic acid kinase low > 101
Pseudomonas sp. RS175 0.93 PFR28_00520 ATP-dependent DNA helicase DinG 0.74 PFR28_04031 Anhydro-N-acetylmuramic acid kinase low > 88
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_3194 ATP-dependent helicase DinG/Rad3 0.74 Pf1N1B4_2562 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) — —
Pseudomonas sp. S08-1 0.89 OH686_04830 ATP-dependent helicase DinG/Rad3 0.70 OH686_15205 Anhydro-N-acetylmuramic acid kinase low > 80
Pseudomonas putida KT2440 0.88 PP_1125 putative Helicase 0.67 PP_0434 Anhydro-N-acetylmuramic acid kinase low > 96
Pseudomonas stutzeri RCH2 0.88 Psest_2857 Rad3-related DNA helicases 0.68 Psest_3637 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases low > 67
Marinobacter adhaerens HP15 0.45 HP15_1856 helicase c2 0.43 HP15_356 anhydro-N-acetylmuramic acid kinase low > 73
Shewanella sp. ANA-3 0.34 Shewana3_2630 dinG ATP-dependent DNA helicase DinG (RefSeq) 0.44 Shewana3_3060 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.34 SO1819 dinG ATP-dependent helicase DinG (NCBI ptt file) 0.43 SO1313 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.33 Shew_2483 dinG ATP-dependent DNA helicase DinG (RefSeq) 0.46 Shew_1020 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.32 Sama_1249 dinG ATP-dependent DNA helicase DinG (RefSeq) 0.43 Sama_0848 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_09290 ATP-dependent DNA helicase DinG 0.42 CSW01_03615 anhydro-N-acetylmuramic acid kinase low > 62
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS16845 ATP-dependent DNA helicase DinG 0.41 ABZR86_RS15665 anhydro-N-acetylmuramic acid kinase low > 74
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS11005 ATP-dependent DNA helicase DinG 0.42 LRK54_RS09210 anhydro-N-acetylmuramic acid kinase low > 59
Rhodanobacter denitrificans MT42 0.29 LRK55_RS10710 ATP-dependent DNA helicase DinG 0.42 LRK55_RS08740 anhydro-N-acetylmuramic acid kinase low > 63
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_12870 dinG ATP-dependent DNA helicase DinG 0.43 OKGIIK_15705 anhydro-N-acetylmuramic acid kinase low > 52
Acidovorax sp. GW101-3H11 0.27 Ac3H11_4422 ATP-dependent helicase DinG/Rad3 0.45 Ac3H11_3055 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) — —
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.5017.1 ATP-dependent helicase DinG/Rad3 0.43 Xcc-8004.4878.1 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 74
Klebsiella michiganensis M5al 0.22 BWI76_RS08920 ATP-dependent DNA helicase DinG 0.42 BWI76_RS16420 anhydro-N-acetylmuramic acid kinase low > 92
Enterobacter asburiae PDN3 0.22 EX28DRAFT_2193 Rad3-related DNA helicases 0.45 EX28DRAFT_1636 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases low > 76
Escherichia fergusonii Becca 0.22 EFB2_03306 ATP-dependent DNA helicase DinG 0.43 EFB2_02352 Anhydro-N-acetylmuramic acid kinase low > 86
Escherichia coli Nissle 1917 0.22 ECOLIN_RS04255 ATP-dependent DNA helicase DinG 0.43 ECOLIN_RS09150 anhydro-N-acetylmuramic acid kinase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.22 GFF697 ATP-dependent helicase DinG/Rad3 0.43 GFF3634 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 78
Escherichia coli ECRC62 0.22 BNILDI_20910 dinG ATP-dependent DNA helicase DinG 0.43 BNILDI_16795 anmK anhydro-N-acetylmuramic acid kinase low > 75
Escherichia coli ECOR27 0.22 NOLOHH_22630 dinG ATP-dependent DNA helicase DinG 0.43 NOLOHH_18005 anmK anhydro-N-acetylmuramic acid kinase low > 75
Escherichia coli ECRC100 0.22 OKFHMN_06280 dinG ATP-dependent DNA helicase DinG 0.43 OKFHMN_27485 anmK anhydro-N-acetylmuramic acid kinase low > 80
Escherichia coli ECRC102 0.22 NIAGMN_04325 dinG ATP-dependent DNA helicase DinG 0.43 NIAGMN_00580 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli BW25113 0.22 b0799 dinG ATP-dependent DNA helicase (NCBI) 0.43 b1640 ydhH anhydro-N-acetylmuramic acid kinase (NCBI) low > 76
Escherichia coli ECRC98 0.22 JDDGAC_09915 dinG ATP-dependent DNA helicase DinG 0.43 JDDGAC_02075 anmK anhydro-N-acetylmuramic acid kinase low > 86
Escherichia coli ECRC101 0.22 MCAODC_25495 dinG ATP-dependent DNA helicase DinG 0.43 MCAODC_17925 anmK anhydro-N-acetylmuramic acid kinase low > 87
Escherichia coli BL21 0.22 ECD_00766 ATP-dependent DNA helicase 0.43 ECD_01610 anhydro-N-acetylmuramic acid kinase low > 61
Escherichia coli ECRC99 0.22 KEDOAH_21630 dinG ATP-dependent DNA helicase DinG 0.43 KEDOAH_00620 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.22 OHPLBJKB_02914 putative ATP-dependent helicase DinG 0.43 OHPLBJKB_02085 Anhydro-N-acetylmuramic acid kinase low > 73
Escherichia coli ECOR38 0.22 HEPCGN_01765 dinG ATP-dependent DNA helicase DinG 0.43 HEPCGN_05870 anmK anhydro-N-acetylmuramic acid kinase low > 87
Enterobacter sp. TBS_079 0.22 MPMX20_01426 ATP-dependent DNA helicase DinG 0.45 MPMX20_01998 Anhydro-N-acetylmuramic acid kinase low > 85
Pectobacterium carotovorum WPP14 0.21 HER17_RS13230 ATP-dependent DNA helicase DinG 0.46 HER17_RS09280 anhydro-N-acetylmuramic acid kinase low > 75
Dickeya dadantii 3937 0.21 DDA3937_RS08765 ATP-dependent DNA helicase DinG 0.44 DDA3937_RS12585 anhydro-N-acetylmuramic acid kinase low > 74
Dickeya dianthicola ME23 0.21 DZA65_RS09155 ATP-dependent DNA helicase DinG 0.43 DZA65_RS13095 anhydro-N-acetylmuramic acid kinase low > 75
Dickeya dianthicola 67-19 0.21 HGI48_RS08850 ATP-dependent DNA helicase DinG 0.43 HGI48_RS12640 anhydro-N-acetylmuramic acid kinase low > 71
Erwinia tracheiphila SCR3 0.20 LU632_RS09400 dinG ATP-dependent DNA helicase DinG 0.44 LU632_RS11250 anmK anhydro-N-acetylmuramic acid kinase low > 74
Serratia liquefaciens MT49 0.20 IAI46_07445 ATP-dependent DNA helicase DinG 0.45 IAI46_11350 anhydro-N-acetylmuramic acid kinase low > 86
Pantoea sp. MT58 0.20 IAI47_13295 ATP-dependent DNA helicase DinG 0.45 IAI47_10710 anhydro-N-acetylmuramic acid kinase low > 76
Rahnella sp. WP5 0.20 EX31_RS19020 ATP-dependent DNA helicase DinG 0.45 EX31_RS13765 anhydro-N-acetylmuramic acid kinase low > 89
Kangiella aquimarina DSM 16071 0.15 B158DRAFT_2492 Rad3-related DNA helicases 0.44 B158DRAFT_0004 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases low > 40
Cupriavidus basilensis FW507-4G11 0.15 RR42_RS07580 helicase 0.45 RR42_RS02660 anhydro-N-acetylmuramic acid kinase low > 128
Alteromonas macleodii MIT1002 0.14 MIT1002_02593 putative ATP-dependent helicase DinG 0.44 MIT1002_03153 Anhydro-N-acetylmuramic acid kinase low > 70
Paraburkholderia bryophila 376MFSha3.1 0.14 H281DRAFT_00533 ATP-dependent DNA helicase DinG 0.43 H281DRAFT_04259 anhydro-N-acetylmuramic acid kinase low > 103
Paraburkholderia sabiae LMG 24235 0.14 QEN71_RS06060 ATP-dependent DNA helicase 0.40 QEN71_RS26820 anhydro-N-acetylmuramic acid kinase low > 153
Variovorax sp. OAS795 0.13 ABID97_RS14180 ATP-dependent DNA helicase 0.42 ABID97_RS24970 anhydro-N-acetylmuramic acid kinase low > 91
Ralstonia solanacearum GMI1000 0.09 RS_RS08195 ATP-dependent DNA helicase 0.44 RS_RS02460 anhydro-N-acetylmuramic acid kinase low > 80
Paraburkholderia graminis OAS925 0.09 ABIE53_002724 ATP-dependent DNA helicase DinG 0.42 ABIE53_003499 anhydro-N-acetylmuramic acid kinase low > 113
Ralstonia solanacearum PSI07 0.09 RPSI07_RS15960 ATP-dependent DNA helicase 0.43 RPSI07_RS21585 anhydro-N-acetylmuramic acid kinase — —
Herbaspirillum seropedicae SmR1 0.09 HSERO_RS14855 helicase 0.43 HSERO_RS02010 anhydro-N-acetylmuramic acid kinase low > 78
Caulobacter crescentus NA1000 Δfur 0.05 CCNA_02118 ATP-dependent helicase, dinG family 0.23 CCNA_01945 anhydro-N-acetylmuramic acid kinase low > 67
Caulobacter crescentus NA1000 0.05 CCNA_02118 ATP-dependent helicase, dinG family 0.23 CCNA_01945 anhydro-N-acetylmuramic acid kinase low > 66

Not shown: 1 genomes with orthologs for Psyr_3856 only; 24 genomes with orthologs for Psyr_4567 only