Conservation of cofitness between Psyr_1748 and Psyr_4130 in Pseudomonas syringae pv. syringae B728a

67 genomes with putative orthologs of both genes

Organism	Ratio1	Gene1	Name1	Description1	Ratio2	Gene2	Name2	Description2	Cofit	Rank
Pseudomonas syringae pv. syringae B728a	1.0	Psyr_1748		ATP-dependent Clp protease ATP-binding subunit ClpX	1.0	Psyr_4130		Peptidase S1, chymotrypsin:PDZ/DHR/GLGF	0.64	6
Pseudomonas syringae pv. syringae B728a ΔmexB	1.00	Psyr_1748		ATP-dependent Clp protease ATP-binding subunit ClpX	1.00	Psyr_4130		Peptidase S1, chymotrypsin:PDZ/DHR/GLGF	low	> 86
Pseudomonas sp. RS175	0.98	PFR28_01229		ATP-dependent Clp protease ATP-binding subunit ClpX	0.87	PFR28_00191		Serine endoprotease DegS	—	—
Pseudomonas fluorescens GW456-L13	0.98	PfGW456L13_2553		ATP-dependent Clp protease ATP-binding subunit ClpX	0.87	PfGW456L13_4998		Outer membrane stress sensor protease DegS	low	> 87
Pseudomonas fluorescens FW300-N2E3	0.98	AO353_20180		ATP-dependent Clp protease ATP-binding subunit ClpX	0.84	AO353_05090		2-alkenal reductase	—	—
Pseudomonas fluorescens FW300-N1B4	0.98	Pf1N1B4_3946		ATP-dependent Clp protease ATP-binding subunit ClpX	0.88	Pf1N1B4_1061		Outer membrane stress sensor protease DegS	—	—
Pseudomonas fluorescens FW300-N2C3	0.98	AO356_01745		ATP-dependent Clp protease ATP-binding subunit ClpX	0.87	AO356_16655		2-alkenal reductase	low	> 104
Pseudomonas sp. DMC3	0.98	GFF1444		ATP-dependent Clp protease ATP-binding subunit ClpX	0.89	GFF1846		Serine endoprotease DegS	low	> 89
Pseudomonas fluorescens FW300-N2E2	0.98	Pf6N2E2_2217		ATP-dependent Clp protease ATP-binding subunit ClpX	0.87	Pf6N2E2_5255		Outer membrane stress sensor protease DegS	0.53	14
Pseudomonas lactucae CFBP13502	0.97	GEMAOFIL_03742		ATP-dependent Clp protease ATP-binding subunit ClpX	0.86	GEMAOFIL_00947		Serine endoprotease DegS	low	> 93
Pseudomonas fluorescens SBW25-INTG	0.97	PFLU_RS19165		ATP-dependent Clp protease ATP-binding subunit ClpX	0.85	PFLU_RS03755		PDZ domain-containing protein	0.27	109
Pseudomonas simiae WCS417	0.97	PS417_17230		Clp protease ATP-binding protein	0.88	PS417_03705		2-alkenal reductase	—	—
Pseudomonas fluorescens SBW25	0.97	PFLU_RS19165		ATP-dependent Clp protease ATP-binding subunit ClpX	0.85	PFLU_RS03755		PDZ domain-containing protein	0.52	109
Pseudomonas sp. SVBP6	0.97	COO64_RS19200	clpX	ATP-dependent Clp protease ATP-binding subunit ClpX	0.88	COO64_RS11715	algW	Do family serine endopeptidase AlgW	low	> 93
Pseudomonas putida KT2440	0.97	PP_2301		ATP-dependent Clp protease ATP-binding subunit ClpX	0.88	PP_1301		quality control serine endoprotease DegS	—	—
Pseudomonas sp. BP01	0.96	JOY50_RS25910	clpX	ATP-dependent Clp protease ATP-binding subunit ClpX	0.88	JOY50_RS15285	algW	Do family serine endopeptidase AlgW	—	—
Pseudomonas sp. S08-1	0.96	OH686_03640		ATP-dependent Clp protease, ATP-binding subunit ClpX	0.76	OH686_08460		Outer membrane stress sensor protease DegS	low	> 80
Pseudomonas segetis P6	0.96	MPMX49_02262		ATP-dependent Clp protease ATP-binding subunit ClpX	0.79	MPMX49_03842		Putative serine protease HtrA	—	—
Pseudomonas stutzeri RCH2	0.94	Psest_2286		endopeptidase Clp ATP-binding regulatory subunit (clpX)	0.69	Psest_3296		Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain	—	—
Pseudomonas aeruginosa PA14	0.94	IKLFDK_08755		endopeptidase La	0.73	IKLFDK_01860		protease AlgW	low	> 100
Dyella japonica UNC79MFTsu3.2	0.79	ABZR86_RS07325		ATP-dependent Clp protease ATP-binding subunit ClpX	0.36	ABZR86_RS09885		trypsin-like peptidase domain-containing protein	—	—
Dechlorosoma suillum PS	0.77	Dsui_2197		endopeptidase Clp ATP-binding regulatory subunit ClpX	0.48	Dsui_1426		periplasmic serine protease, Do/DeqQ family	low	> 51
Shewanella sp. ANA-3	0.76	Shewana3_2660	clpX	ATP-dependent protease ATP-binding subunit ClpX (RefSeq)	0.34	Shewana3_0689		DegS serine peptidase (RefSeq)	low	> 73
Escherichia fergusonii Becca	0.75	EFB2_03619		ATP-dependent Clp protease ATP-binding subunit ClpX	0.33	EFB2_00595		Serine endoprotease DegS	low	> 86
Escherichia coli ECOR38	0.75	HEPCGN_06945	clpX	ATP-dependent protease ATP-binding subunit ClpX	0.32	HEPCGN_16670	degS	outer membrane-stress sensor serine endopeptidase DegS	low	> 88
Escherichia coli ECRC62	0.75	BNILDI_22680	clpX	ATP-dependent protease ATP-binding subunit ClpX	0.33	BNILDI_01935	degS	outer membrane-stress sensor serine endopeptidase DegS	—	—
Escherichia coli ECRC100	0.75	OKFHMN_08330	clpX	ATP-dependent protease ATP-binding subunit ClpX	0.32	OKFHMN_17800	degS	outer membrane-stress sensor serine endopeptidase DegS	—	—
Escherichia coli HS(pFamp)R (ATCC 700891)	0.75	OHPLBJKB_03235		ATP-dependent Clp protease ATP-binding subunit ClpX	0.32	OHPLBJKB_00469		Serine endoprotease DegS	—	—
Escherichia coli BL21	0.75	ECD_00389		ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease	0.33	ECD_03095		serine endoprotease, periplasmic	—	—
Escherichia coli Nissle 1917	0.75	ECOLIN_RS02630		ATP-dependent protease ATP-binding subunit ClpX	0.33	ECOLIN_RS18550		outer membrane-stress sensor serine endopeptidase DegS	low	> 55
Escherichia coli ECRC101	0.75	MCAODC_27555	clpX	ATP-dependent protease ATP-binding subunit ClpX	0.32	MCAODC_08320	degS	outer membrane-stress sensor serine endopeptidase DegS	—	—
Escherichia coli BW25113	0.75	b0438	clpX	ATP-dependent protease ATP-binding subunit (NCBI)	0.32	b3235	degS	serine endoprotease, periplasmic (NCBI)	—	—
Escherichia coli ECRC102	0.75	NIAGMN_06385	clpX	ATP-dependent protease ATP-binding subunit ClpX	0.32	NIAGMN_15560	degS	outer membrane-stress sensor serine endopeptidase DegS	—	—
Escherichia coli ECRC99	0.75	KEDOAH_19635	clpX	ATP-dependent protease ATP-binding subunit ClpX	0.32	KEDOAH_10350	degS	outer membrane-stress sensor serine endopeptidase DegS	—	—
Escherichia coli ECOR27	0.75	NOLOHH_01265	clpX	ATP-dependent protease ATP-binding subunit ClpX	0.32	NOLOHH_09600	degS	outer membrane-stress sensor serine endopeptidase DegS	—	—
Escherichia coli ECRC98	0.75	JDDGAC_11985	clpX	ATP-dependent protease ATP-binding subunit ClpX	0.32	JDDGAC_21425	degS	outer membrane-stress sensor serine endopeptidase DegS	—	—
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868	0.75	GFF4354		ATP-dependent Clp protease ATP-binding subunit ClpX	0.32	GFF2975		Outer membrane stress sensor protease DegS	—	—
Methylophilus sp. DMC18	0.75	GFF1304		ATP-dependent Clp protease ATP-binding subunit ClpX	0.48	GFF1575		Periplasmic pH-dependent serine endoprotease DegQ	—	—
Enterobacter asburiae PDN3	0.75	EX28DRAFT_2533		endopeptidase Clp ATP-binding regulatory subunit (clpX)	0.33	EX28DRAFT_3284		periplasmic serine pepetdase DegS	—	—
Pantoea sp. MT58	0.75	IAI47_14650		ATP-dependent protease ATP-binding subunit ClpX	0.32	IAI47_17265		outer membrane-stress sensor serine endopeptidase DegS	—	—
Pantoea agglomerans CFBP13505 P0401	0.75	PagCFBP13505_RS10545		ATP-dependent protease ATP-binding subunit ClpX	0.33	PagCFBP13505_RS09430		outer membrane-stress sensor serine endopeptidase DegS	—	—
Klebsiella michiganensis M5al	0.75	BWI76_RS06530		ATP-dependent Clp protease ATP-binding subunit ClpX	0.32	BWI76_RS25370		outer membrane-stress sensor serine endopeptidase DegS	—	—
Erwinia tracheiphila SCR3	0.75	LU632_RS18340	clpX	ATP-dependent protease ATP-binding subunit ClpX	0.32	LU632_RS21360	degS	outer membrane-stress sensor serine endopeptidase DegS	—	—
Enterobacter sp. TBS_079	0.75	MPMX20_01029		ATP-dependent Clp protease ATP-binding subunit ClpX	0.33	MPMX20_04139		Serine endoprotease DegS	—	—
Erwinia tracheiphila HP pepo 2.2	0.75	IJEDHG_16445	clpX	ATP-dependent protease ATP-binding subunit ClpX	0.32	IJEDHG_13660	degS	outer membrane-stress sensor serine endopeptidase DegS	—	—
Rahnella sp. WP5	0.74	EX31_RS22250		ATP-dependent protease ATP-binding subunit ClpX	0.34	EX31_RS12470		outer membrane-stress sensor serine endopeptidase DegS	—	—
Paraburkholderia sabiae LMG 24235	0.74	QEN71_RS21980		ATP-dependent Clp protease ATP-binding subunit ClpX	0.50	QEN71_RS27795		Do family serine endopeptidase	low	> 153
Dickeya dianthicola 67-19	0.74	HGI48_RS05690		ATP-dependent protease ATP-binding subunit ClpX	0.32	HGI48_RS01515		outer membrane-stress sensor serine endopeptidase DegS	low	> 71
Dickeya dianthicola ME23	0.74	DZA65_RS06015		ATP-dependent protease ATP-binding subunit ClpX	0.32	DZA65_RS01580		outer membrane-stress sensor serine endopeptidase DegS	—	—
Dickeya dadantii 3937	0.74	DDA3937_RS05645		ATP-dependent protease ATP-binding subunit ClpX	0.32	DDA3937_RS01600		outer membrane-stress sensor serine endopeptidase DegS	low	> 74
Paraburkholderia graminis OAS925	0.74	ABIE53_002116		ATP-dependent Clp protease ATP-binding subunit ClpX	0.49	ABIE53_003687		serine protease DegQ	low	> 113
Burkholderia phytofirmans PsJN	0.73	BPHYT_RS09455		ATP-dependent Clp protease ATP-binding subunit ClpX	0.50	BPHYT_RS17640		2-alkenal reductase	—	—
Paraburkholderia bryophila 376MFSha3.1	0.73	H281DRAFT_00897		ATP-dependent Clp protease ATP-binding subunit ClpX	0.50	H281DRAFT_05667		serine protease DegQ	—	—
Ralstonia solanacearum PSI07	0.72	RPSI07_RS16130		ATP-dependent Clp protease ATP-binding subunit ClpX	0.50	RPSI07_RS10490		PDZ domain-containing protein	low	> 81
Ralstonia solanacearum GMI1000	0.72	RS_RS08650		ATP-dependent Clp protease ATP-binding subunit ClpX	0.51	RS_RS14690		PDZ domain-containing protein	0.58	2
Cupriavidus basilensis FW507-4G11	0.72	RR42_RS09025		Clp protease ATP-binding protein	0.49	RR42_RS18840		2-alkenal reductase	—	—
Ralstonia solanacearum IBSBF1503	0.72	RALBFv3_RS01345		ATP-dependent Clp protease ATP-binding subunit ClpX	0.51	RALBFv3_RS06745		2-alkenal reductase	—	—
Ralstonia solanacearum UW163	0.72	UW163_RS14655		ATP-dependent Clp protease ATP-binding subunit ClpX	0.51	UW163_RS06870		2-alkenal reductase	—	—
Ralstonia sp. UNC404CL21Col	0.72	ABZR87_RS12790		ATP-dependent Clp protease ATP-binding subunit ClpX	0.50	ABZR87_RS02400		Do family serine endopeptidase	low	> 80
Herbaspirillum seropedicae SmR1	0.71	HSERO_RS12910		ATP-dependent protease	0.49	HSERO_RS20260		2-alkenal reductase	—	—
Variovorax sp. SCN45	0.71	GFF488		ATP-dependent Clp protease ATP-binding subunit ClpX	0.43	GFF5365		Outer membrane stress sensor protease DegS	low	> 127
Variovorax sp. OAS795	0.71	ABID97_RS17595		ATP-dependent Clp protease ATP-binding subunit ClpX	0.41	ABID97_RS23065		trypsin-like peptidase domain-containing protein	low	> 91
Acidovorax sp. GW101-3H11	0.70	Ac3H11_936		ATP-dependent Clp protease ATP-binding subunit ClpX	0.45	Ac3H11_4743		Outer membrane stress sensor protease DegS	—	—
Hydrogenophaga sp. GW460-11-11-14-LB1	0.70	GFF4043		ATP-dependent Clp protease ATP-binding subunit ClpX	0.46	GFF1300		Outer membrane stress sensor protease DegS	low	> 90
Acinetobacter baumannii LAC-4	0.69	RR41_RS16560		ATP-dependent Clp protease ATP-binding subunit ClpX	0.45	RR41_RS05700		trypsin-like peptidase domain-containing protein	—	—
Acinetobacter radioresistens SK82	0.69	MPMX26_00409		ATP-dependent Clp protease ATP-binding subunit ClpX	0.44	MPMX26_00998		Serine endoprotease DegS	low	> 36
Castellaniella sp019104865 MT123	0.68	ABCV34_RS05130		ATP-dependent Clp protease ATP-binding subunit ClpX	0.44	ABCV34_RS12650		trypsin-like peptidase domain-containing protein	0.29	40
Azospirillum brasilense Sp245	0.68	AZOBR_RS07140		ATP-dependent protease	0.35	AZOBR_RS00340		peptidase	—	—

Not shown: 50 genomes with orthologs for Psyr_1748 only; 0 genomes with orthologs for Psyr_4130 only