| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_2567 | | Zinc-containing alcohol dehydrogenase superfamily | 1.0 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.51 | 6 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_2567 | | Zinc-containing alcohol dehydrogenase superfamily | 1.00 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | low | > 86 |
| Pseudomonas simiae WCS417 | 0.95 | PS417_12045 | | iditol 2-dehydrogenase | 0.89 | PS417_23875 | | molecular chaperone DnaK | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.50 | PFLU_RS19505 | | erythritol/L-threitol dehydrogenase | 0.88 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.50 | PFLU_RS19505 | | erythritol/L-threitol dehydrogenase | 0.88 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.49 | ABIE53_003384 | | threonine dehydrogenase-like Zn-dependent dehydrogenase | 0.33 | ABIE53_000423 | | DnaK suppressor protein | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.49 | H281DRAFT_04147 | | L-iditol 2-dehydrogenase | 0.33 | H281DRAFT_02205 | | transcriptional regulator, TraR/DksA family | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.49 | BPHYT_RS16050 | | xylitol 2-dehydrogenase (EC 1.1.1.9) (from data) | 0.33 | BPHYT_RS01640 | | molecular chaperone DnaK | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS33850 | | alcohol dehydrogenase catalytic domain-containing protein | 0.34 | QEN71_RS00340 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas stutzeri RCH2 | 0.25 | Psest_1428 | | Threonine dehydrogenase and related Zn-dependent dehydrogenases | 0.80 | Psest_1003 | | RNA polymerase-binding protein DksA | — | — |
| Azospirillum sp. SherDot2 | 0.24 | MPMX19_00618 | | Sorbitol dehydrogenase | 0.34 | MPMX19_01492 | | RNA polymerase-binding transcription factor DksA | low | > 112 |
| Cupriavidus basilensis FW507-4G11 | 0.23 | RR42_RS09405 | | butanediol dehydrogenase | 0.35 | RR42_RS01030 | | molecular chaperone DnaK | — | — |
| Pseudomonas sp. RS175 | 0.23 | PFR28_01772 | | putative zinc-type alcohol dehydrogenase-like protein YdjJ | 0.91 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | low | > 88 |
| Pseudomonas putida KT2440 | 0.23 | PP_0552 | | 2,3-butanediol dehydrogenase | 0.76 | PP_4693 | | RNA polymerase-binding transcription factor DksA | low | > 96 |
| Pseudomonas fluorescens FW300-N2C3 | 0.23 | AO356_24895 | | butanediol dehydrogenase | 0.91 | AO356_16095 | | molecular chaperone DnaK | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.23 | Pf6N2E2_668 | | 2,3-butanediol dehydrogenase, R-alcohol forming, (R)- and (S)-acetoin-specific (EC 1.1.1.4) | 0.79 | Pf6N2E2_5160 | | C4-type zinc finger protein, DksA/TraR family | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.23 | AO353_25145 | | butanediol dehydrogenase | 0.89 | AO353_14420 | | molecular chaperone DnaK | low | > 101 |
| Pseudomonas lactucae CFBP13502 | 0.22 | GEMAOFIL_00399 | | putative zinc-type alcohol dehydrogenase-like protein YdjJ | 0.91 | GEMAOFIL_04926 | | RNA polymerase-binding transcription factor DksA | low | > 93 |
| Pseudomonas sp. SVBP6 | 0.22 | COO64_RS18330 | | 2,3-butanediol dehydrogenase | 0.78 | COO64_RS15070 | dksA | RNA polymerase-binding protein DksA | low | > 93 |
| Pseudomonas aeruginosa PA14 | 0.22 | IKLFDK_21130 | | butanediol dehydrogenase | 0.82 | IKLFDK_30000 | | RNA polymerase-binding protein DksA | low | > 100 |
| Escherichia coli BW25113 | 0.20 | b1774 | ydjJ | predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI) | 0.68 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.20 | ECD_01743 | | putative Zn-dependent NAD(P)-binding oxidoreductase | 0.68 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | — | — |
| Escherichia coli ECRC98 | 0.20 | JDDGAC_01330 | ydjJ | Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ | 0.68 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | low | > 87 |
| Escherichia coli ECRC101 | 0.20 | MCAODC_18655 | ydjJ | Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ | 0.68 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | low | > 88 |
| Escherichia coli ECRC102 | 0.20 | NIAGMN_01310 | ydjJ | Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ | 0.68 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | low | > 80 |
| Escherichia coli ECRC99 | 0.20 | KEDOAH_01355 | ydjJ | Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ | 0.68 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECRC100 | 0.20 | OKFHMN_26755 | ydjJ | Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ | 0.68 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | low | > 79 |
| Escherichia coli ECOR38 | 0.20 | HEPCGN_05145 | ydjJ | Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ | 0.68 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | low | > 88 |
| Escherichia coli Nissle 1917 | 0.20 | ECOLIN_RS09895 | | NAD(P)-dependent alcohol dehydrogenase | 0.68 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | — | — |
| Escherichia fergusonii Becca | 0.20 | EFB2_02220 | | putative zinc-type alcohol dehydrogenase-like protein YdjJ | 0.68 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | low | > 86 |
| Escherichia coli ECRC62 | 0.20 | BNILDI_16070 | ydjJ | Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ | 0.68 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | low | > 75 |
| Escherichia coli ECOR27 | 0.20 | NOLOHH_17285 | ydjJ | Uncharacterized zinc-type alcohol dehydrogenase-like protein YdjJ | 0.68 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | low | > 76 |
| Klebsiella pneumoniae MKP103 | 0.20 | KDGMDA_19215 | | alcohol dehydrogenase | 0.68 | KDGMDA_13270 | | RNA polymerase-binding protein DksA | low | > 95 |
| Klebsiella michiganensis M5al | 0.20 | BWI76_RS11545 | | NAD(P)-dependent alcohol dehydrogenase | 0.68 | BWI76_RS05015 | | transcriptional regulator | low | > 92 |
| Erwinia amylovora T8 | 0.20 | OLJFJH_12295 | | butanediol dehydrogenase | 0.66 | OLJFJH_00765 | | RNA polymerase-binding protein DksA | — | — |
| Dinoroseobacter shibae DFL-12 | 0.19 | Dshi_4159 | | Alcohol dehydrogenase GroES domain protein (RefSeq) | 0.35 | Dshi_1884 | | transcriptional regulator, TraR/DksA family (RefSeq) | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.18 | GFF2529 | | L-galactonate dehydrogenase (EC 1.1.1.-) | 0.67 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | low | > 78 |
| Bosea sp. OAE506 | 0.18 | ABIE41_RS09605 | | L-idonate 5-dehydrogenase | 0.33 | ABIE41_RS13460 | | RNA polymerase-binding protein DksA | low | > 77 |
| Agrobacterium fabrum C58 | 0.18 | Atu4740 | | zinc-binding dehydrogenase | 0.39 | Atu1359 | | dnaK deletion suppressor protein | low | > 89 |
| Sinorhizobium meliloti 1021 | 0.18 | SM_b20445 | | alcohol dehydrogenase | 0.40 | SMc00469 | | DnaK suppressor protein | — | — |
| Pectobacterium carotovorum WPP14 | 0.18 | HER17_RS17045 | | Zn-dependent oxidoreductase | 0.68 | HER17_RS05580 | | RNA polymerase-binding protein DksA | low | > 75 |
| Azospirillum brasilense Sp245 | 0.18 | AZOBR_RS16135 | | sorbitol dehydrogenase | 0.35 | AZOBR_RS11245 | | molecular chaperone DnaK | — | — |
| Shewanella sp. ANA-3 | 0.17 | Shewana3_0305 | | alcohol dehydrogenase (RefSeq) | 0.66 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 73 |
| Dickeya dianthicola ME23 | 0.17 | DZA65_RS15815 | | Zn-dependent oxidoreductase | 0.67 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | — | — |
| Dickeya dianthicola 67-19 | 0.17 | HGI48_RS15070 | | Zn-dependent oxidoreductase | 0.67 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | low | > 71 |
| Dickeya dadantii 3937 | 0.17 | DDA3937_RS20430 | | L-threonine 3-dehydrogenase | 0.68 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | — | — |
| Pantoea agglomerans CFBP13505 P0401 | 0.17 | PagCFBP13505_RS18645 | | L-threonine 3-dehydrogenase | 0.66 | PagCFBP13505_RS13365 | | RNA polymerase-binding protein DksA | low | > 74 |
| Castellaniella sp019104865 MT123 | 0.17 | ABCV34_RS14100 | | L-threonine 3-dehydrogenase | 0.33 | ABCV34_RS13420 | | RNA polymerase-binding protein DksA | — | — |
| Shewanella amazonensis SB2B | 0.17 | Sama_0097 | tdh | L-threonine 3-dehydrogenase (RefSeq) | 0.67 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 62 |
| Herbaspirillum seropedicae SmR1 | 0.17 | HSERO_RS05485 | | phosphoesterase | 0.36 | HSERO_RS00840 | | molecular chaperone DnaK | — | — |
| Ralstonia solanacearum GMI1000 | 0.17 | RS_RS21660 | | L-idonate 5-dehydrogenase | 0.33 | RS_RS00230 | | RNA polymerase-binding protein DksA | low | > 80 |
| Rahnella sp. WP5 | 0.17 | EX31_RS14385 | | L-threonine 3-dehydrogenase | 0.67 | EX31_RS03250 | | RNA polymerase-binding protein DksA | low | > 89 |
| Enterobacter sp. TBS_079 | 0.17 | MPMX20_02093 | | Starvation-sensing protein RspB | 0.67 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | low | > 85 |
| Pantoea sp. MT58 | 0.17 | IAI47_00700 | | L-threonine 3-dehydrogenase | 0.66 | IAI47_15635 | | RNA polymerase-binding protein DksA | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.17 | CSW01_18565 | | L-threonine 3-dehydrogenase | 0.67 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | low | > 62 |
| Enterobacter asburiae PDN3 | 0.17 | EX28DRAFT_1456 | | Threonine dehydrogenase and related Zn-dependent dehydrogenases | 0.67 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | — | — |
| Serratia liquefaciens MT49 | 0.16 | IAI46_24725 | | L-threonine 3-dehydrogenase | 0.68 | IAI46_21210 | | RNA polymerase-binding protein DksA | low | > 86 |
| Ralstonia solanacearum PSI07 | 0.16 | RPSI07_RS02790 | | L-idonate 5-dehydrogenase | 0.34 | RPSI07_RS23720 | | RNA polymerase-binding protein DksA | low | > 81 |
| Shewanella loihica PV-4 | 0.16 | Shew_3710 | tdh | L-threonine 3-dehydrogenase (RefSeq) | 0.67 | Shew_3129 | | TraR/DksA family transcriptional regulator (RefSeq) | — | — |
| Alteromonas macleodii MIT1002 | 0.16 | MIT1002_00064 | | L-threonine 3-dehydrogenase | 0.64 | MIT1002_03690 | | DnaK suppressor protein | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.16 | B158DRAFT_0285 | | L-threonine 3-dehydrogenase (EC 1.1.1.103) | 0.68 | B158DRAFT_0056 | | transcriptional regulator, TraR/DksA family | low | > 40 |
| Rhizobium sp. OAE497 | 0.16 | ABIE40_RS25805 | | L-idonate 5-dehydrogenase | 0.42 | ABIE40_RS10345 | | RNA polymerase-binding protein DksA | low | > 107 |
| Pseudomonas fluorescens GW456-L13 | 0.15 | PfGW456L13_3657 | | Threonine dehydrogenase and related Zn-dependent dehydrogenases | 0.87 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | low | > 87 |
| Phaeobacter inhibens DSM 17395 | 0.15 | PGA1_c34320 | | L-threonine 3-dehydrogenase (EC 1.1.1.103) (from data) | 0.35 | PGA1_c11040 | | dnaK suppressor protein DksA | low | > 62 |
| Sphingomonas koreensis DSMZ 15582 | 0.14 | Ga0059261_2605 | | Threonine dehydrogenase and related Zn-dependent dehydrogenases | 0.30 | Ga0059261_0274 | | transcriptional regulator, TraR/DksA family | low | > 68 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.14 | A4249_RS02510 | | L-threonine 3-dehydrogenase | 0.37 | A4249_RS08530 | | RNA polymerase-binding protein DksA | low | > 48 |
| Rhodospirillum rubrum S1H | 0.13 | Rru_A0252 | | Zinc-containing alcohol dehydrogenase superfamily (NCBI) | 0.33 | Rru_A2847 | | Transcriptional regulators, TraR/DksA family (NCBI) | low | > 58 |
| Sphingobium sp. HT1-2 | 0.13 | GFF4913 | | oxidoreductase, zinc-binding dehydrogenase family protein | 0.33 | GFF2254 | | DksA family protein PA5536 (no Zn-finger) | low | > 95 |
| Erwinia tracheiphila SCR3 | 0.12 | LU632_RS25525 | | alcohol dehydrogenase catalytic domain-containing protein | 0.67 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas segetis P6 | 0.11 | MPMX49_00793 | | Sorbitol dehydrogenase | 0.84 | MPMX49_01257 | | RNA polymerase-binding transcription factor DksA | — | — |
Not shown: 18 genomes with orthologs for Psyr_2567 only; 18 genomes with orthologs for Psyr_0835 only