Conservation of cofitness between Psyr_0485 and Psyr_0497 in Pseudomonas syringae pv. syringae B728a

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0485 Protein of unknown function DUF179 1.0 Psyr_0497 LamB/YcsF 0.33 15
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0485 Protein of unknown function DUF179 1.00 Psyr_0497 LamB/YcsF low > 86
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_2350 UPF0301 protein YqgE 0.43 Pf1N1B4_3366 Lactam utilization protein LamB low > 87
Pseudomonas sp. RS175 0.75 PFR28_04234 hypothetical protein 0.42 PFR28_00728 5-oxoprolinase subunit A 3 low > 88
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_4609 UPF0301 protein YqgE 0.41 Pf6N2E2_2708 Lactam utilization protein LamB low > 103
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_1019 UPF0301 protein YqgE 0.43 PfGW456L13_4478 Lactam utilization protein LamB low > 87
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_08120 hypothetical protein 0.43 AO353_17995 hypothetical protein low > 101
Pseudomonas sp. S08-1 0.69 OH686_10925 UPF0301 protein YqgE 0.41 OH686_08750 Lactam utilization protein LamB low > 80
Pseudomonas stutzeri RCH2 0.66 Psest_0294 Putative transcriptional regulator 0.43 Psest_1542 Uncharacterized proteins, homologs of lactam utilization protein B low > 67
Ralstonia solanacearum GMI1000 0.46 RS_RS03395 YqgE/AlgH family protein 0.41 RS_RS21600 hypothetical protein — —
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04814 putative transcriptional regulator 0.44 H281DRAFT_05811 UPF0271 protein low > 103
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS04220 hypothetical protein 0.44 BPHYT_RS18635 LamB/YcsF family protein low > 109
Paraburkholderia graminis OAS925 0.45 ABIE53_001128 putative transcriptional regulator 0.44 ABIE53_000049 UPF0271 protein low > 113
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS12610 DUF179 domain-containing protein 0.42 RALBFv3_RS03425 LamB/YcsF family protein — —
Ralstonia solanacearum UW163 0.45 UW163_RS00955 DUF179 domain-containing protein 0.42 UW163_RS10245 LamB/YcsF family protein — —
Ralstonia solanacearum PSI07 0.45 RPSI07_RS20650 YqgE/AlgH family protein 0.41 RPSI07_RS02850 hypothetical protein low > 81
Variovorax sp. OAS795 0.45 ABID97_RS24675 YqgE/AlgH family protein 0.45 ABID97_RS01255 5-oxoprolinase subunit PxpA low > 91
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS15875 hypothetical protein 0.40 RR42_RS00650 hypothetical protein low > 128
Variovorax sp. SCN45 0.44 GFF2157 UPF0301 protein YqgE 0.66 GFF5546 Lactam utilization protein LamB low > 127
Magnetospirillum magneticum AMB-1 0.44 AMB_RS04505 YqgE/AlgH family protein 0.43 AMB_RS15095 LamB/YcsF family protein low > 64
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS08610 YqgE/AlgH family protein 0.40 ABZR87_RS15325 5-oxoprolinase subunit PxpA low > 80
Alteromonas macleodii MIT1002 0.43 MIT1002_03056 hypothetical protein 0.40 MIT1002_02298 LamB/YcsF family protein low > 70
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS25795 YqgE/AlgH family protein 0.44 QEN71_RS28660 5-oxoprolinase subunit PxpA 0.63 104
Marinobacter adhaerens HP15 0.42 HP15_3510 transcriptional regulator 0.41 HP15_2685 UPF0271 protein, LamB/YcsF family low > 73
Azospirillum brasilense Sp245 0.40 AZOBR_RS10525 hypothetical protein 0.44 AZOBR_RS14715 hypothetical protein low > 97
Rhodopseudomonas palustris CGA009 0.40 TX73_004710 YqgE/AlgH family protein 0.46 TX73_013895 LamB/YcsF family protein low > 86
Pectobacterium carotovorum WPP14 0.40 HER17_RS02630 YqgE/AlgH family protein 0.38 HER17_RS14975 5-oxoprolinase subunit PxpA low > 75
Castellaniella sp019104865 MT123 0.40 ABCV34_RS10730 YqgE/AlgH family protein 0.65 ABCV34_RS01510 5-oxoprolinase subunit PxpA 0.61 48
Azospirillum sp. SherDot2 0.39 MPMX19_01077 hypothetical protein 0.43 MPMX19_04959 5-oxoprolinase subunit A low > 112
Serratia liquefaciens MT49 0.39 IAI46_21395 YqgE/AlgH family protein 0.40 IAI46_06225 5-oxoprolinase subunit PxpA 0.45 14
Dickeya dadantii 3937 0.39 DDA3937_RS18565 YqgE/AlgH family protein 0.41 DDA3937_RS08225 LamB/YcsF family protein low > 74
Agrobacterium fabrum C58 0.39 Atu0781 hypothetical protein 0.67 Atu3910 LamB/YcsF family protein low > 89
Pantoea sp. MT58 0.39 IAI47_03610 YqgE/AlgH family protein 0.38 IAI47_13795 5-oxoprolinase subunit PxpA low > 76
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_02485 YqgE/AlgH family protein 0.40 CSW01_18055 hypothetical protein low > 62
Rhodospirillum rubrum S1H 0.39 Rru_A3059 Protein of unknown function DUF179 (NCBI) 0.44 Rru_A1504 LamB/YcsF (NCBI) low > 58
Bosea sp. OAE506 0.38 ABIE41_RS23005 YqgE/AlgH family protein 0.38 ABIE41_RS24170 5-oxoprolinase subunit PxpA low > 77
Shewanella amazonensis SB2B 0.38 Sama_2472 putative transcriptional regulator (RefSeq) 0.37 Sama_0021 hypothetical protein (RefSeq) low > 62
Klebsiella michiganensis M5al 0.38 BWI76_RS24080 DUF179 domain-containing protein 0.36 BWI76_RS08360 LamB/YcsF family protein low > 92
Lysobacter sp. OAE881 0.38 ABIE51_RS16025 YqgE/AlgH family protein 0.32 ABIE51_RS08130 5-oxoprolinase subunit PxpA low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.38 GFF3050 UPF0301 protein YqgE 0.35 GFF4618 Lactam utilization protein LamB low > 78
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0191 Putative transcriptional regulator 0.30 B158DRAFT_1994 Uncharacterized proteins, homologs of lactam utilization protein B low > 40
Escherichia coli ECRC62 0.37 BNILDI_09720 yqgE YqgE/AlgH family protein 0.37 BNILDI_21375 pxpA 5-oxoprolinase subunit PxpA low > 75
Escherichia coli ECOR27 0.37 NOLOHH_11140 yqgE YqgE/AlgH family protein 0.37 NOLOHH_23380 pxpA 5-oxoprolinase subunit PxpA low > 75
Escherichia coli ECRC99 0.37 KEDOAH_08870 algH YqgE/AlgH family protein 0.37 KEDOAH_20970 pxpA 5-oxoprolinase subunit PxpA — —
Escherichia coli ECRC98 0.37 JDDGAC_22900 yqgE YqgE/AlgH family protein 0.37 JDDGAC_10650 pxpA 5-oxoprolinase subunit PxpA low > 86
Escherichia coli ECRC102 0.37 NIAGMN_17035 yqgE YqgE/AlgH family protein 0.37 NIAGMN_05050 pxpA 5-oxoprolinase subunit PxpA — —
Escherichia coli ECRC101 0.37 MCAODC_09790 yqgE YqgE/AlgH family protein 0.37 MCAODC_26215 pxpA 5-oxoprolinase subunit PxpA low > 87
Escherichia coli ECRC100 0.37 OKFHMN_19270 yqgE YqgE/AlgH family protein 0.37 OKFHMN_06995 pxpA 5-oxoprolinase subunit PxpA low > 80
Escherichia coli BL21 0.37 ECD_02778 uncharacterized protein 0.37 ECD_00673 UPF0271 family protein low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_00770 hypothetical protein 0.37 OHPLBJKB_03004 hypothetical protein low > 73
Escherichia coli BW25113 0.37 b2948 yqgE orf, hypothetical protein (VIMSS) 0.36 b0713 ybgL hypothetical protein (NCBI) low > 76
Escherichia coli Nissle 1917 0.37 ECOLIN_RS16400 YqgE/AlgH family protein 0.36 ECOLIN_RS03815 5-oxoprolinase subunit PxpA low > 55
Escherichia coli ECOR38 0.37 HEPCGN_18575 yqgE YqgE/AlgH family protein 0.37 HEPCGN_01215 pxpA 5-oxoprolinase subunit PxpA low > 87
Escherichia fergusonii Becca 0.37 EFB2_00954 hypothetical protein 0.36 EFB2_03390 5-oxoprolinase subunit A low > 86
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_11085 algH YqgE/AlgH family protein 0.47 OKGIIK_04730 5-oxoprolinase subunit A low > 52
Phaeobacter inhibens DSM 17395 0.36 PGA1_c03130 Putative transcriptional regulator 0.49 PGA1_c28700 LamB/YcsF family protein low > 62
Dinoroseobacter shibae DFL-12 0.35 Dshi_3083 protein of unknown function DUF179 (RefSeq) 0.42 Dshi_2026 LamB/YcsF family protein (RefSeq) low > 64
Rahnella sp. WP5 0.35 EX31_RS02670 YqgE/AlgH family protein 0.38 EX31_RS23395 5-oxoprolinase subunit PxpA low > 89
Enterobacter asburiae PDN3 0.35 EX28DRAFT_2986 Putative transcriptional regulator 0.38 EX28DRAFT_2274 Uncharacterized proteins, homologs of lactam utilization protein B low > 76
Shewanella loihica PV-4 0.35 Shew_1144 hypothetical protein (RefSeq) 0.38 Shew_0006 LamB/YcsF family protein (RefSeq) low > 60
Enterobacter sp. TBS_079 0.35 MPMX20_03806 hypothetical protein 0.37 MPMX20_01347 5-oxoprolinase subunit A low > 85
Mucilaginibacter yixingensis YX-36 DSM 26809 0.21 ABZR88_RS10130 YqgE/AlgH family protein 0.42 ABZR88_RS12605 5-oxoprolinase subunit PxpA low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.20 CA265_RS07725 hypothetical protein 0.42 CA265_RS10100 lactam utilization protein LamB low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.14 CA264_05580 hypothetical protein 0.43 CA264_08790 LamB/YcsF family protein low > 74

Not shown: 30 genomes with orthologs for Psyr_0485 only; 1 genomes with orthologs for Psyr_0497 only