| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2E2 | 1.0 | Pf6N2E2_5038 | | ATP-dependent helicase HrpB | 1.0 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.22 | 14 |
| Pseudomonas fluorescens FW300-N2C3 | 0.95 | AO356_15485 | | ATP-dependent helicase | 0.99 | AO356_20125 | | 23S rRNA pseudouridylate synthase | low | > 104 |
| Pseudomonas sp. RS175 | 0.94 | PFR28_03833 | | ATP-dependent RNA helicase HrpB | 0.96 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.92 | PfGW456L13_1395 | | ATP-dependent helicase HrpB | 0.89 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.92 | Pf1N1B4_2728 | | ATP-dependent helicase HrpB | 0.91 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.90 | AO353_06300 | | ATP-dependent helicase | 0.92 | AO353_01405 | | 23S rRNA pseudouridylate synthase | low | > 101 |
| Pseudomonas simiae WCS417 | 0.88 | PS417_24550 | | ATP-dependent helicase | 0.92 | PS417_21480 | | 23S rRNA pseudouridylate synthase | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.88 | PFLU_RS26480 | | ATP-dependent helicase HrpB | 0.92 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.88 | PFLU_RS26480 | | ATP-dependent helicase HrpB | 0.92 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.84 | Psyr_4320 | | ATP-dependent helicase HrpB | 0.90 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.84 | Psyr_4320 | | ATP-dependent helicase HrpB | 0.90 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Pseudomonas putida KT2440 | 0.80 | PP_4772 | | ATP-dependent helicase HrpB | 0.87 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.78 | Psest_0629 | | ATP-dependent helicase HrpB | 0.83 | Psest_1680 | | pseudouridine synthase, RluA family | — | — |
| Pseudomonas sp. S08-1 | 0.78 | OH686_08800 | | ATP-dependent helicase HrpB | 0.84 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | low | > 80 |
| Magnetospirillum magneticum AMB-1 | 0.46 | AMB_RS06395 | | ATP-dependent helicase HrpB | 0.24 | AMB_RS15620 | | RluA family pseudouridine synthase | — | — |
| Azospirillum sp. SherDot2 | 0.46 | MPMX19_00095 | | ATP-dependent RNA helicase HrpB | 0.25 | MPMX19_01718 | | Ribosomal large subunit pseudouridine synthase C | low | > 112 |
| Marinobacter adhaerens HP15 | 0.43 | HP15_3782 | | RNA helicase, ATP-dependent DEAH box, HrpB type | 0.50 | HP15_2221 | | pseudouridine synthase, RluA family | low | > 73 |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_3737 | | ATP-dependent helicase HrpB | 0.55 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | low | > 76 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.39 | DVU1543 | hrpB | ATP-dependent helicase HrpB (TIGR) | 0.20 | DVU3191 | rluC | ribosomal large subunit pseudouridine synthase C (TIGR) | low | > 55 |
| Rhodospirillum rubrum S1H | 0.39 | Rru_A2365 | | ATP-dependent helicase HrpB (NCBI) | 0.26 | Rru_A2659 | | Pseudouridine synthase, RluD (NCBI) | — | — |
| Caulobacter crescentus NA1000 | 0.39 | CCNA_01243 | | ATP-dependent helicase hrpB | 0.21 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.39 | CCNA_01243 | | ATP-dependent helicase hrpB | 0.21 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | low | > 67 |
| Enterobacter sp. TBS_079 | 0.38 | MPMX20_00834 | | ATP-dependent RNA helicase HrpB | 0.55 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | low | > 85 |
| Shewanella sp. ANA-3 | 0.38 | Shewana3_0622 | | ATP-dependent helicase HrpB (RefSeq) | 0.53 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.38 | GFF84 | | ATP-dependent helicase HrpB | 0.55 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 78 |
| Escherichia fergusonii Becca | 0.38 | EFB2_03896 | | ATP-dependent RNA helicase HrpB | 0.55 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Escherichia coli ECRC98 | 0.38 | JDDGAC_13925 | hrpB | ATP-dependent helicase HrpB | 0.55 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.58 | 56 |
| Escherichia coli ECRC101 | 0.38 | MCAODC_00845 | hrpB | ATP-dependent helicase HrpB | 0.55 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 87 |
| Escherichia coli Nissle 1917 | 0.38 | ECOLIN_RS00830 | | ATP-dependent helicase HrpB | 0.55 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 55 |
| Escherichia coli ECRC99 | 0.38 | KEDOAH_17825 | hrpB | ATP-dependent helicase HrpB | 0.55 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli ECRC102 | 0.38 | NIAGMN_08180 | hrpB | ATP-dependent helicase HrpB | 0.55 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli ECRC100 | 0.38 | OKFHMN_10330 | hrpB | ATP-dependent helicase HrpB | 0.55 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 80 |
| Escherichia coli BW25113 | 0.38 | b0148 | hrpB | helicase, ATP-dependent (VIMSS) | 0.55 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.38 | HEPCGN_08280 | hrpB | ATP-dependent helicase HrpB | 0.55 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 87 |
| Klebsiella michiganensis M5al | 0.38 | BWI76_RS05030 | | ATP-dependent helicase | 0.55 | BWI76_RS11050 | | 23S rRNA pseudouridine(955/2504/2580) synthase | low | > 92 |
| Escherichia coli ECOR27 | 0.38 | NOLOHH_02675 | hrpB | ATP-dependent helicase HrpB | 0.55 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Escherichia coli ECRC62 | 0.38 | BNILDI_08995 | hrpB | ATP-dependent helicase HrpB | 0.55 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.37 | OHPLBJKB_03514 | | hypothetical protein | 0.55 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | low | > 73 |
| Escherichia coli BL21 | 0.37 | ECD_00147 | | putative ATP-dependent helicase | 0.55 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | low | > 61 |
| Rhodanobacter sp. FW510-T8 | 0.37 | OKGIIK_16270 | hrpA | HrpA-like RNA helicase | 0.42 | OKGIIK_07405 | rluA | 23S rRNA pseudouridine(955/2504/2580) synthase | low | > 52 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.37 | Xcc-8004.354.1 | | macromolecule metabolism; macromolecule synthesis, modification; dna - replication, repair, restr./modif. | 0.42 | Xcc-8004.2616.1 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.37 | LRK55_RS09655 | | ATP-dependent helicase HrpB | 0.42 | LRK55_RS17750 | | RluA family pseudouridine synthase | low | > 63 |
| Agrobacterium fabrum C58 | 0.37 | Atu0052 | | helicase | 0.29 | Atu1471 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.37 | A4249_RS05425 | | ATP-dependent helicase HrpB | 0.22 | A4249_RS07865 | | RluA family pseudouridine synthase | low | > 48 |
| Rhodanobacter denitrificans FW104-10B01 | 0.37 | LRK54_RS10015 | | ATP-dependent helicase HrpB | 0.42 | LRK54_RS17895 | | RluA family pseudouridine synthase | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.37 | ABZR86_RS13060 | | ATP-dependent helicase HrpB | 0.40 | ABZR86_RS02725 | | RluA family pseudouridine synthase | low | > 74 |
| Lysobacter sp. OAE881 | 0.37 | ABIE51_RS00675 | | ATP-dependent helicase HrpB | 0.42 | ABIE51_RS11800 | | RluA family pseudouridine synthase | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.36 | CSW01_03170 | | ATP-dependent helicase HrpB | 0.48 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 62 |
| Sinorhizobium meliloti 1021 | 0.36 | SMc02586 | | ATP-dependent helicase | 0.26 | SMc01275 | | ribosomal large subunit pseudouridine synthase C protein | low | > 103 |
| Dinoroseobacter shibae DFL-12 | 0.36 | Dshi_2580 | | ATP-dependent helicase HrpB (RefSeq) | 0.24 | Dshi_0315 | | pseudouridine synthase, RluA family (RefSeq) | low | > 64 |
| Serratia liquefaciens MT49 | 0.36 | IAI46_21195 | | ATP-dependent helicase HrpB | 0.54 | IAI46_09755 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 86 |
| Rahnella sp. WP5 | 0.36 | EX31_RS03235 | | ATP-dependent helicase HrpB | 0.56 | EX31_RS24400 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 89 |
| Shewanella loihica PV-4 | 0.36 | Shew_3124 | | ATP-dependent helicase HrpB (RefSeq) | 0.54 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | low | > 60 |
| Rhizobium sp. OAE497 | 0.35 | ABIE40_RS19515 | | ATP-dependent helicase HrpB | 0.28 | ABIE40_RS09915 | | RluA family pseudouridine synthase | low | > 107 |
| Phaeobacter inhibens DSM 17395 | 0.34 | PGA1_c24190 | | ATP-dependent RNA helicase HrpB | 0.24 | PGA1_c01950 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Shewanella amazonensis SB2B | 0.34 | Sama_2972 | | ATP-dependent helicase HrpB (RefSeq) | 0.55 | Sama_1988 | | pseudouridylate synthase (RefSeq) | low | > 62 |
| Dickeya dianthicola 67-19 | 0.33 | HGI48_RS16035 | | ATP-dependent helicase HrpB | 0.53 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.33 | HER17_RS05595 | | ATP-dependent helicase HrpB | 0.56 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Sphingomonas koreensis DSMZ 15582 | 0.33 | Ga0059261_2125 | | ATP-dependent helicase HrpB | 0.22 | Ga0059261_1033 | | pseudouridine synthase, RluA family | — | — |
| Pantoea sp. MT58 | 0.33 | IAI47_15620 | | ATP-dependent helicase HrpB | 0.57 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 76 |
| Dickeya dianthicola ME23 | 0.32 | DZA65_RS17120 | | ATP-dependent helicase HrpB | 0.53 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Dickeya dadantii 3937 | 0.32 | DDA3937_RS15920 | | ATP-dependent helicase HrpB | 0.54 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.28 | MIT1002_00406 | | ATP-dependent RNA helicase HrpB | 0.54 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | low | > 70 |
Not shown: 6 genomes with orthologs for Pf6N2E2_5038 only; 22 genomes with orthologs for Pf6N2E2_5944 only