| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2E2 | 1.0 | Pf6N2E2_2645 | | ATP-dependent DNA helicase RecQ | 1.0 | Pf6N2E2_2822 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | 0.43 | 3 |
| Pseudomonas fluorescens FW300-N2C3 | 0.99 | AO356_04050 | | ATP-dependent DNA helicase RecQ | 0.95 | AO356_04870 | | TetR family transcriptional regulator | low | > 104 |
| Pseudomonas sp. RS175 | 0.98 | PFR28_00788 | | ATP-dependent DNA helicase RecQ | 0.95 | PFR28_00633 | | HTH-type transcriptional regulator TtgR | 0.32 | 5 |
| Pseudomonas fluorescens FW300-N1B4 | 0.96 | Pf1N1B4_3533 | | ATP-dependent DNA helicase RecQ | 0.87 | Pf1N1B4_3248 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.96 | AO353_18430 | | ATP-dependent DNA helicase RecQ | 0.87 | AO353_17305 | | TetR family transcriptional regulator | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.95 | PfGW456L13_4423 | | ATP-dependent DNA helicase RecQ | 0.85 | PfGW456L13_4579 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | low | > 87 |
| Pseudomonas sp. DMC3 | 0.95 | GFF2380 | | ATP-dependent DNA helicase RecQ | 0.86 | GFF2214 | | HTH-type transcriptional regulator TtgR | low | > 89 |
| Pseudomonas simiae WCS417 | 0.95 | PS417_19950 | | ATP-dependent DNA helicase RecQ | 0.81 | PS417_06780 | | TetR family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.94 | PFLU_RS21920 | | DNA helicase RecQ | 0.81 | PFLU_RS06815 | | TetR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.94 | PFLU_RS21920 | | DNA helicase RecQ | 0.81 | PFLU_RS06815 | | TetR family transcriptional regulator | low | > 109 |
| Pseudomonas lactucae CFBP13502 | 0.94 | GEMAOFIL_04187 | | ATP-dependent DNA helicase RecQ | 0.82 | GEMAOFIL_01517 | | HTH-type transcriptional regulator TtgR | low | > 93 |
| Pseudomonas syringae pv. syringae B728a | 0.91 | Psyr_3738 | | ATP-dependent DNA helicase RecQ | 0.75 | Psyr_4006 | | transcriptional regulator, TetR family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.91 | Psyr_3738 | | ATP-dependent DNA helicase RecQ | 0.75 | Psyr_4006 | | transcriptional regulator, TetR family | low | > 86 |
| Pseudomonas sp. SVBP6 | 0.88 | COO64_RS21845 | recQ | DNA helicase RecQ | 0.76 | COO64_RS26265 | | TetR family transcriptional regulator | low | > 93 |
| Pseudomonas sp. BP01 | 0.86 | JOY50_RS01155 | recQ | DNA helicase RecQ | 0.73 | JOY50_RS14455 | ttgR | efflux transport transcriptional regulator TtgR | low | > 84 |
| Pseudomonas putida KT2440 | 0.85 | PP_4516 | | ATP-dependent DNA 3 | 0.73 | PP_1387 | | Probable HTH-type transcriptional regulator TtgR | low | > 96 |
| Pseudomonas sp. S08-1 | 0.84 | OH686_20670 | | ATP-dependent DNA helicase RecQ | 0.61 | OH686_16040 | | Transcriptional regulator, AcrR family | low | > 80 |
| Pseudomonas aeruginosa PA14 | 0.81 | IKLFDK_17145 | | DNA helicase RecQ | 0.27 | IKLFDK_18245 | | efflux system transcriptional repressor NalD | low | > 100 |
| Marinobacter adhaerens HP15 | 0.52 | HP15_1718 | | ATP-dependent DNA helicase RecQ | 0.26 | HP15_3151 | | transcriptional regulator, TetR family | low | > 73 |
| Methylophilus sp. DMC18 | 0.51 | GFF2139 | | ATP-dependent DNA helicase RecQ | 0.30 | GFF1647 | | HTH-type transcriptional regulator TtgR | low | > 43 |
| Rhodanobacter denitrificans FW104-10B01 | 0.50 | LRK54_RS13000 | | DNA helicase RecQ | 0.12 | LRK54_RS14210 | | TetR family transcriptional regulator | — | — |
| Rhodanobacter denitrificans MT42 | 0.50 | LRK55_RS12700 | | DNA helicase RecQ | 0.12 | LRK55_RS13930 | | TetR family transcriptional regulator | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.49 | RR42_RS19310 | | ATP-dependent DNA helicase RecQ | 0.46 | RR42_RS20640 | | TetR family transcriptional regulator | 0.46 | 20 |
| Paraburkholderia sabiae LMG 24235 | 0.48 | QEN71_RS28295 | | DNA helicase RecQ | 0.42 | QEN71_RS02515 | | TetR family transcriptional regulator | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.47 | BPHYT_RS18145 | | ATP-dependent DNA helicase RecQ | 0.43 | BPHYT_RS16180 | | TetR family transcriptional regulator | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.47 | ABIE53_003792 | | ATP-dependent DNA helicase RecQ | 0.46 | ABIE53_003410 | | TetR/AcrR family acrAB operon transcriptional repressor | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.47 | H281DRAFT_06595 | | ATP-dependent DNA helicase RecQ | 0.46 | H281DRAFT_04172 | | transcriptional regulator, TetR family | — | — |
| Herbaspirillum seropedicae SmR1 | 0.47 | HSERO_RS02465 | | ATP-dependent DNA helicase RecQ | 0.41 | HSERO_RS02420 | | TetR family transcriptional regulator | — | — |
| Ralstonia solanacearum PSI07 | 0.47 | RPSI07_RS10025 | | DNA helicase RecQ | 0.42 | RPSI07_RS23895 | | TetR family transcriptional regulator | low | > 81 |
| Ralstonia solanacearum UW163 | 0.46 | UW163_RS06400 | | DNA helicase RecQ | 0.42 | UW163_RS04125 | | TetR family transcriptional regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.46 | RALBFv3_RS07220 | | DNA helicase RecQ | 0.42 | RALBFv3_RS09455 | | TetR family transcriptional regulator | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.46 | RS_RS15155 | | DNA helicase RecQ | 0.42 | RS_RS00055 | | TetR family transcriptional regulator | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.46 | ABZR87_RS02880 | | DNA helicase RecQ | 0.40 | ABZR87_RS05305 | | TetR family transcriptional regulator | low | > 80 |
| Rhodopseudomonas palustris CGA009 | 0.46 | TX73_025080 | | DNA helicase RecQ | 0.26 | TX73_021215 | | TetR family transcriptional regulator | low | > 86 |
| Dechlorosoma suillum PS | 0.46 | Dsui_3092 | | ATP-dependent DNA helicase RecQ | 0.28 | Dsui_1873 | | transcriptional regulator | low | > 51 |
| Sinorhizobium meliloti 1021 | 0.44 | SMc01566 | | ATP-dependent DNA helicase | 0.27 | SMc02866 | | transcriptional regulator | low | > 103 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.44 | GFF1958 | | ATP-dependent DNA helicase RecQ | 0.35 | GFF3838 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | low | > 90 |
| Variovorax sp. OAS795 | 0.44 | ABID97_RS03395 | | DNA helicase RecQ | 0.30 | ABID97_RS00315 | | TetR family transcriptional regulator | 0.28 | 55 |
| Agrobacterium fabrum C58 | 0.43 | Atu0061 | | ATP-dependent DNA helicase | 0.23 | Atu3201 | | TetR family transcriptional regulator | low | > 89 |
| Acidovorax sp. GW101-3H11 | 0.42 | Ac3H11_3308 | | ATP-dependent DNA helicase RecQ | 0.32 | Ac3H11_4450 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | low | > 79 |
| Pantoea sp. MT58 | 0.40 | IAI47_18360 | | ATP-dependent DNA helicase RecQ | 0.44 | IAI47_14505 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 76 |
| Enterobacter asburiae PDN3 | 0.40 | EX28DRAFT_4487 | | ATP-dependent DNA helicase RecQ | 0.40 | EX28DRAFT_2494 | | transcriptional regulator, TetR family | low | > 76 |
| Enterobacter sp. TBS_079 | 0.40 | MPMX20_04458 | | ATP-dependent DNA helicase RecQ | 0.34 | MPMX20_01066 | | HTH-type transcriptional regulator AcrR | low | > 85 |
| Escherichia coli ECRC62 | 0.40 | BNILDI_05040 | recQ | ATP-dependent DNA helicase RecQ | 0.39 | BNILDI_22545 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 75 |
| Escherichia coli ECRC99 | 0.40 | KEDOAH_13790 | recQ | ATP-dependent DNA helicase RecQ | 0.39 | KEDOAH_19770 | acrR | multidrug efflux transporter transcriptional repressor AcrR | — | — |
| Escherichia fergusonii Becca | 0.40 | EFB2_04815 | | ATP-dependent DNA helicase RecQ | 0.39 | EFB2_03594 | | HTH-type transcriptional regulator AcrR | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.40 | OHPLBJKB_04229 | | ATP-dependent DNA helicase RecQ | 0.39 | OHPLBJKB_03210 | | HTH-type transcriptional regulator AcrR | low | > 74 |
| Escherichia coli ECRC101 | 0.40 | MCAODC_04865 | recQ | ATP-dependent DNA helicase RecQ | 0.39 | MCAODC_27420 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 88 |
| Escherichia coli ECRC98 | 0.40 | JDDGAC_17985 | recQ | ATP-dependent DNA helicase RecQ | 0.39 | JDDGAC_11845 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 87 |
| Escherichia coli ECRC100 | 0.40 | OKFHMN_14360 | recQ | ATP-dependent DNA helicase RecQ | 0.39 | OKFHMN_08195 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 79 |
| Escherichia coli ECRC102 | 0.40 | NIAGMN_12115 | recQ | ATP-dependent DNA helicase RecQ | 0.39 | NIAGMN_06250 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 80 |
| Escherichia coli ECOR38 | 0.40 | HEPCGN_13060 | recQ | ATP-dependent DNA helicase RecQ | 0.39 | HEPCGN_06810 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 88 |
| Escherichia coli ECOR27 | 0.40 | NOLOHH_06490 | recQ | ATP-dependent DNA helicase RecQ | 0.39 | NOLOHH_01130 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 76 |
| Escherichia coli BW25113 | 0.40 | b3822 | recQ | ATP-dependent DNA helicase (NCBI) | 0.39 | b0464 | acrR | DNA-binding transcriptional repressor (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.40 | ECOLIN_RS21935 | | ATP-dependent DNA helicase RecQ | 0.39 | ECOLIN_RS02760 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 55 |
| Escherichia coli BL21 | 0.40 | ECD_03701 | | ATP-dependent DNA helicase | 0.39 | ECD_00415 | | transcriptional repressor | low | > 61 |
| Pantoea agglomerans CFBP13505 P0401 | 0.40 | PagCFBP13505_RS15340 | | ATP-dependent DNA helicase RecQ | 0.45 | PagCFBP13505_RS10690 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 74 |
| Klebsiella pneumoniae MKP103 | 0.39 | KDGMDA_09735 | | ATP-dependent DNA helicase RecQ | 0.39 | KDGMDA_14845 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 95 |
| Dickeya dianthicola 67-19 | 0.39 | HGI48_RS20005 | | ATP-dependent DNA helicase RecQ | 0.42 | HGI48_RS05800 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 71 |
| Dickeya dianthicola ME23 | 0.39 | DZA65_RS21045 | | ATP-dependent DNA helicase RecQ | 0.42 | DZA65_RS06125 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 75 |
| Dickeya dadantii 3937 | 0.39 | DDA3937_RS19850 | | ATP-dependent DNA helicase RecQ | 0.43 | DDA3937_RS05745 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 74 |
| Serratia liquefaciens MT49 | 0.39 | IAI46_00770 | | ATP-dependent DNA helicase RecQ | 0.42 | IAI46_05195 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 86 |
| Rahnella sp. WP5 | 0.39 | EX31_RS15210 | | ATP-dependent DNA helicase RecQ | 0.39 | EX31_RS22480 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 89 |
| Klebsiella michiganensis M5al | 0.39 | BWI76_RS01245 | | DNA helicase RecQ | 0.39 | BWI76_RS06785 | | DNA-binding transcriptional repressor AcrR | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.39 | HER17_RS01395 | | ATP-dependent DNA helicase RecQ | 0.42 | HER17_RS15730 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.39 | GFF248 | | ATP-dependent DNA helicase RecQ | 0.39 | GFF4381 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | low | > 78 |
| Erwinia amylovora T8 | 0.39 | OLJFJH_06445 | | ATP-dependent DNA helicase RecQ | 0.43 | OLJFJH_17845 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 58 |
| Erwinia tracheiphila HP pepo 2.2 | 0.38 | IJEDHG_08740 | recQ | ATP-dependent DNA helicase RecQ | 0.46 | IJEDHG_16590 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 61 |
| Erwinia tracheiphila SCR3 | 0.38 | LU632_RS24095 | recQ | ATP-dependent DNA helicase RecQ | 0.45 | LU632_RS18175 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 74 |
Not shown: 40 genomes with orthologs for Pf6N2E2_2645 only; 1 genomes with orthologs for Pf6N2E2_2822 only