Conservation of cofitness between PP_2417 and PP_5310 in Pseudomonas putida KT2440

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2417 putative Iron ABC transporter, permease protein 1.0 PP_5310 junction-specific ATP-dependent DNA helicase 0.19 19
Pseudomonas fluorescens SBW25-INTG 0.79 PFLU_RS20715 iron ABC transporter permease 0.89 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas fluorescens SBW25 0.79 PFLU_RS20715 iron ABC transporter permease 0.89 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas simiae WCS417 0.79 PS417_18730 ABC transporter permease 0.89 PS417_27870 ATP-dependent DNA helicase RecG low > 88
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_16425 ABC transporter permease 0.87 AO356_12380 ATP-dependent DNA helicase RecG low > 104
Pseudomonas syringae pv. syringae B728a 0.69 Psyr_3095 transport system permease protein 0.87 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.69 Psyr_3095 transport system permease protein 0.87 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Sinorhizobium meliloti 1021 0.64 SM_b20057 ABC transporter permease 0.35 SMc00228 ATP-dependent DNA helicase RecG
Agrobacterium fabrum C58 0.59 Atu3395 iron (III ABC transporter permease ABC transporter permease 0.34 Atu1780 ATP-dependent DNA helicase low > 89
Rhodospirillum rubrum S1H 0.54 Rru_A1137 transport system permease protein (NCBI) 0.28 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI)
Enterobacter asburiae PDN3 0.46 EX28DRAFT_2824 ABC-type Fe3+-siderophore transport system, permease component 0.56 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 76
Shewanella amazonensis SB2B 0.29 Sama_0761 iron-compound ABC transporter, permease protein (RefSeq) 0.57 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) low > 62
Serratia liquefaciens MT49 0.27 IAI46_06470 iron ABC transporter permease 0.56 IAI46_24905 ATP-dependent DNA helicase RecG low > 86
Dickeya dadantii 3937 0.27 DDA3937_RS02510 iron ABC transporter permease 0.55 DDA3937_RS00170 ATP-dependent DNA helicase RecG low > 74
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_80 ABC transporter (iron.B12.siderophore.hemin) , permease component 0.89 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Dickeya dianthicola 67-19 0.26 HGI48_RS02455 iron ABC transporter permease 0.55 HGI48_RS21190 ATP-dependent DNA helicase RecG low > 71
Shewanella sp. ANA-3 0.26 Shewana3_3279 Vitamin B12 transporter, permease component (fecCD-like) (from data) 0.56 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) low > 73
Shewanella loihica PV-4 0.26 Shew_0713 transport system permease protein (RefSeq) 0.55 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) low > 60
Bosea sp. OAE506 0.25 ABIE41_RS02455 iron ABC transporter permease 0.30 ABIE41_RS15815 ATP-dependent DNA helicase RecG low > 77
Fusobacterium nucleatum SB010 0.25 HUW76_10040 iron ABC transporter permease 0.34 HUW76_01465 ATP-dependent DNA helicase RecG low > 35
Shewanella oneidensis MR-1 0.25 SO1034 iron-compound ABC transporter, permease protein (NCBI ptt file) 0.55 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_1341 ABC transporter (iron.B12.siderophore.hemin) , permease component 0.89 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-)
Pseudomonas fluorescens FW300-N2E2 0.25 Pf6N2E2_3546 ABC transporter (iron.B12.siderophore.hemin) , permease component 0.87 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 103
Erwinia tracheiphila SCR3 0.25 LU632_RS17285 iron ABC transporter permease 0.56 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.36 63
Pseudomonas sp. RS175 0.25 PFR28_05188 Hemin transport system permease protein HmuU 0.87 PFR28_04435 ATP-dependent DNA helicase RecG
Dinoroseobacter shibae DFL-12 0.25 Dshi_0562 transport system permease protein (RefSeq) 0.33 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) low > 64
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_13550 ABC transporter permease 0.89 AO353_09320 ATP-dependent DNA helicase RecG
Pantoea sp. MT58 0.24 IAI47_06690 iron ABC transporter permease 0.56 IAI47_00500 ATP-dependent DNA helicase RecG low > 76
Pectobacterium carotovorum WPP14 0.24 HER17_RS00890 iron ABC transporter permease 0.56 HER17_RS21395 ATP-dependent DNA helicase RecG low > 75
Marinobacter adhaerens HP15 0.24 HP15_3955 bacterial transport system permease protein 0.60 HP15_309 DNA helicase, ATP-dependent, RecG low > 73
Rhodanobacter sp. FW510-T8 0.23 OKGIIK_05365 Fe3+-siderophore ABC transporter permease 0.54 OKGIIK_12090 recG ATP-dependent DNA helicase RecG low > 52
Castellaniella sp019104865 MT123 0.23 ABCV34_RS11140 iron ABC transporter permease 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG low > 48
Rahnella sp. WP5 0.23 EX31_RS19040 iron ABC transporter permease 0.56 EX31_RS15820 ATP-dependent DNA helicase RecG low > 89
Escherichia coli ECRC101 0.23 OKFHMN_28370 fepD iron ABC transporter permease 0.56 OKFHMN_15545 recG ATP-dependent DNA helicase RecG
Escherichia coli ECRC102 0.23 NIAGMN_27865 fepD iron ABC transporter permease 0.56 NIAGMN_13305 recG ATP-dependent DNA helicase RecG
Escherichia coli ECRC99 0.23 KEDOAH_25360 fepD iron ABC transporter permease 0.56 KEDOAH_12600 recG ATP-dependent DNA helicase RecG
Cupriavidus basilensis FW507-4G11 0.23 RR42_RS16135 ABC transporter permease 0.47 RR42_RS17390 ATP-dependent DNA helicase RecG low > 128
Dickeya dianthicola ME23 0.23 DZA65_RS02560 iron ABC transporter permease 0.55 DZA65_RS22160 ATP-dependent DNA helicase RecG low > 75
Paraburkholderia sabiae LMG 24235 0.22 QEN71_RS31160 iron ABC transporter permease 0.46 QEN71_RS26630 ATP-dependent DNA helicase RecG
Sphingomonas koreensis DSMZ 15582 0.22 Ga0059261_0623 ABC-type Fe3+-siderophore transport system, permease component 0.32 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 68
Ralstonia sp. UNC404CL21Col 0.22 ABZR87_RS00090 iron ABC transporter permease 0.46 ABZR87_RS01270 ATP-dependent DNA helicase RecG low > 80
Caulobacter crescentus NA1000 0.21 CCNA_01250 FecCD-family transporter protein 0.33 CCNA_01504 ATP-dependent DNA helicase recG low > 66
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_01250 FecCD-family transporter protein 0.33 CCNA_01504 ATP-dependent DNA helicase recG low > 67
Dechlorosoma suillum PS 0.21 Dsui_0530 ABC-type Fe3+-siderophore transport system, permease component 0.45 Dsui_0311 ATP-dependent DNA helicase RecG low > 51
Azospirillum brasilense Sp245 0.21 AZOBR_RS19150 ABC transporter permease 0.35 AZOBR_RS09850 ATP-dependent DNA helicase RecG low > 97
Azospirillum sp. SherDot2 0.21 MPMX19_05168 Hemin transport system permease protein HmuU 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG
Phocaeicola dorei CL03T12C01 0.21 ABI39_RS10455 iron ABC transporter permease 0.34 ABI39_RS02470 ATP-dependent DNA helicase RecG low > 72
Bacteroides stercoris CC31F 0.21 HMPREF1181_RS11840 iron ABC transporter permease 0.33 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG low > 56
Burkholderia phytofirmans PsJN 0.20 BPHYT_RS04855 iron ABC transporter 0.47 BPHYT_RS03400 ATP-dependent DNA helicase RecG low > 109
Phocaeicola vulgatus CL09T03C04 0.20 HMPREF1058_RS14740 iron ABC transporter permease 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG low > 67
Ralstonia solanacearum GMI1000 0.20 RS_RS12045 iron ABC transporter permease 0.46 RS_RS13565 DNA helicase RecG
Ralstonia solanacearum IBSBF1503 0.19 RALBFv3_RS04490 iron ABC transporter permease 0.46 RALBFv3_RS05675 DNA helicase RecG low > 76
Ralstonia solanacearum UW163 0.19 UW163_RS09180 iron ABC transporter permease 0.46 UW163_RS07950 DNA helicase RecG
Bacteroides thetaiotaomicron VPI-5482 0.19 BT2099 Fe3+ ABC transporter, permease (NCBI ptt file) 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file)
Paraburkholderia bryophila 376MFSha3.1 0.19 H281DRAFT_00137 iron complex transport system permease protein 0.46 H281DRAFT_04672 ATP-dependent DNA helicase RecG low > 103
Variovorax sp. SCN45 0.18 GFF872 Hemin ABC transporter, permease protein 0.40 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) low > 127
Escherichia coli ECRC62 0.17 BNILDI_21975 fepD ferrienterobactin ABC transporter permease 0.56 BNILDI_04090 recG ATP-dependent DNA helicase RecG
Brevundimonas sp. GW460-12-10-14-LB2 0.16 A4249_RS05460 iron ABC transporter permease 0.29 A4249_RS04765 ATP-dependent DNA helicase RecG low > 48
Variovorax sp. OAS795 0.15 ABID97_RS17405 iron ABC transporter permease 0.41 ABID97_RS01575 ATP-dependent DNA helicase RecG

Not shown: 4 genomes with orthologs for PP_2417 only; 39 genomes with orthologs for PP_5310 only