Conservation of cofitness between PP_5155 and PP_1988 in Pseudomonas putida KT2440

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase 1.0 PP_1988 3-isopropylmalate dehydrogenase 0.80 5
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.93 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.85 15
Pseudomonas syringae pv. syringae B728a 0.94 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.91 Psyr_1985 3-isopropylmalate dehydrogenase 0.91 6
Pseudomonas syringae pv. syringae B728a ΔmexB 0.94 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.91 Psyr_1985 3-isopropylmalate dehydrogenase 0.92 9
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_08510 3-phosphoglycerate dehydrogenase 0.92 AO353_20635 3-isopropylmalate dehydrogenase 0.85 7
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.93 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.81 19
Pseudomonas sp. S08-1 0.92 OH686_11280 D-3-phosphoglycerate dehydrogenase 0.87 OH686_04470 3-isopropylmalate dehydrogenase low > 80
Pseudomonas stutzeri RCH2 0.92 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases 0.87 Psest_2589 3-isopropylmalate dehydrogenase — —
Pseudomonas sp. RS175 0.91 PFR28_04842 D-3-phosphoglycerate dehydrogenase 0.93 PFR28_02821 3-isopropylmalate dehydrogenase 0.69 5
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS28695 phosphoglycerate dehydrogenase 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.33 48
Pseudomonas fluorescens SBW25 0.91 PFLU_RS28695 phosphoglycerate dehydrogenase 0.93 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_10300 3-phosphoglycerate dehydrogenase 0.94 AO356_21415 3-isopropylmalate dehydrogenase 0.89 12
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.94 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.88 5
Pseudomonas simiae WCS417 0.91 PS417_27040 3-phosphoglycerate dehydrogenase 0.93 PS417_18585 3-isopropylmalate dehydrogenase 0.83 10
Variovorax sp. OAS795 0.80 ABID97_RS07235 phosphoglycerate dehydrogenase 0.64 ABID97_RS08455 3-isopropylmalate dehydrogenase — —
Acidovorax sp. GW101-3H11 0.79 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.64 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 79
Marinobacter adhaerens HP15 0.77 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein 0.73 HP15_1832 3-isopropylmalate dehydrogenase — —
Variovorax sp. SCN45 0.77 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.64 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.75 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.63 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.36 73
Acinetobacter radioresistens SK82 0.71 MPMX26_02773 D-3-phosphoglycerate dehydrogenase 0.73 MPMX26_00348 3-isopropylmalate dehydrogenase low > 36
Alteromonas macleodii MIT1002 0.69 MIT1002_02993 D-3-phosphoglycerate dehydrogenase 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase 0.79 59
Shewanella amazonensis SB2B 0.69 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.52 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.85 42
Shewanella oneidensis MR-1 0.68 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) 0.53 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.89 11
Shewanella loihica PV-4 0.68 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.53 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.98 6
Shewanella sp. ANA-3 0.68 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.53 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.86 31
Klebsiella michiganensis M5al 0.66 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase 0.53 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.80 31
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS09635 phosphoglycerate dehydrogenase 0.42 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.93 21
Escherichia coli ECOR27 0.66 NOLOHH_11370 serA phosphoglycerate dehydrogenase 0.54 NOLOHH_03065 leuA 2-isopropylmalate synthase low > 57
Escherichia coli ECRC101 0.66 MCAODC_09980 serA phosphoglycerate dehydrogenase 0.54 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli BW25113 0.66 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) 0.54 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.86 27
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase 0.54 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Escherichia coli BL21 0.66 ECD_02744 D-3-phosphoglycerate dehydrogenase 0.54 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent 0.59 49
Escherichia coli ECRC101 0.66 OKFHMN_19460 serA phosphoglycerate dehydrogenase 0.54 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase — —
Serratia liquefaciens MT49 0.66 IAI46_20900 phosphoglycerate dehydrogenase 0.53 IAI46_03350 3-isopropylmalate dehydrogenase 0.62 67
Escherichia coli ECRC62 0.66 BNILDI_09905 serA phosphoglycerate dehydrogenase 0.54 BNILDI_08545 leuA 2-isopropylmalate synthase — —
Escherichia coli Nissle 1917 0.66 ECOLIN_RS16210 phosphoglycerate dehydrogenase 0.54 ECOLIN_RS00395 3-isopropylmalate dehydrogenase low > 52
Escherichia coli ECRC99 0.66 KEDOAH_08680 serA phosphoglycerate dehydrogenase 0.54 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC102 0.66 NIAGMN_17225 serA phosphoglycerate dehydrogenase 0.54 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase — —
Escherichia fergusonii Becca 0.66 EFB2_00990 D-3-phosphoglycerate dehydrogenase 0.54 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Escherichia coli ECOR38 0.66 HEPCGN_18760 serA phosphoglycerate dehydrogenase 0.54 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase low > 85
Escherichia coli ECRC98 0.66 JDDGAC_23100 serA phosphoglycerate dehydrogenase 0.54 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase — —
Enterobacter asburiae PDN3 0.66 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases 0.54 EX28DRAFT_3669 3-isopropylmalate dehydrogenase — —
Enterobacter sp. TBS_079 0.65 MPMX20_03771 D-3-phosphoglycerate dehydrogenase 0.54 MPMX20_00768 3-isopropylmalate dehydrogenase 0.85 35
Erwinia tracheiphila SCR3 0.65 LU632_RS05855 serA phosphoglycerate dehydrogenase 0.50 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.62 60
Pantoea sp. MT58 0.65 IAI47_03725 phosphoglycerate dehydrogenase 0.50 IAI47_16005 3-isopropylmalate dehydrogenase 0.91 9
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.54 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS03185 phosphoglycerate dehydrogenase 0.45 LRK54_RS10325 3-isopropylmalate dehydrogenase 0.77 13
Rhodanobacter denitrificans MT42 0.65 LRK55_RS02935 phosphoglycerate dehydrogenase 0.45 LRK55_RS09965 3-isopropylmalate dehydrogenase low > 63
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_10055 serA phosphoglycerate dehydrogenase 0.45 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Rahnella sp. WP5 0.65 EX31_RS21470 phosphoglycerate dehydrogenase 0.53 EX31_RS03685 3-isopropylmalate dehydrogenase 0.82 22
Dickeya dadantii 3937 0.64 DDA3937_RS18480 phosphoglycerate dehydrogenase 0.52 DDA3937_RS18120 3-isopropylmalate dehydrogenase 0.87 9
Kangiella aquimarina DSM 16071 0.64 B158DRAFT_0518 Phosphoglycerate dehydrogenase and related dehydrogenases 0.70 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 40
Dickeya dianthicola ME23 0.64 DZA65_RS19540 phosphoglycerate dehydrogenase 0.52 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.72 16
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.81 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.85 5
Dickeya dianthicola 67-19 0.64 HGI48_RS18400 phosphoglycerate dehydrogenase 0.52 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.73 25
Pectobacterium carotovorum WPP14 0.64 HER17_RS02725 phosphoglycerate dehydrogenase 0.52 HER17_RS03080 3-isopropylmalate dehydrogenase 0.91 14
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_12555 phosphoglycerate dehydrogenase 0.53 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Lysobacter sp. OAE881 0.62 ABIE51_RS13245 phosphoglycerate dehydrogenase 0.49 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.90 18
Azospirillum sp. SherDot2 0.60 MPMX19_00753 D-3-phosphoglycerate dehydrogenase 0.57 MPMX19_00607 3-isopropylmalate dehydrogenase — —
Rhizobium sp. OAE497 0.59 ABIE40_RS30040 phosphoglycerate dehydrogenase 0.58 ABIE40_RS19050 3-isopropylmalate dehydrogenase low > 107
Azospirillum brasilense Sp245 0.59 AZOBR_RS10940 3-phosphoglycerate dehydrogenase 0.55 AZOBR_RS14130 3-isopropylmalate dehydrogenase — —
Rhodospirillum rubrum S1H 0.58 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) 0.56 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) — —
Bosea sp. OAE506 0.55 ABIE41_RS08410 phosphoglycerate dehydrogenase 0.53 ABIE41_RS11860 3-isopropylmalate dehydrogenase — —
Castellaniella sp019104865 MT123 0.50 ABCV34_RS15150 phosphoglycerate dehydrogenase 0.63 ABCV34_RS04280 3-isopropylmalate dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS27010 D-3-phosphoglycerate dehydrogenase 0.64 RR42_RS14385 3-isopropylmalate dehydrogenase low > 128
Bifidobacterium breve UCC2003 0.44 BBR_RS16970 phosphoglycerate dehydrogenase 0.25 BBR_RS12870 3-isopropylmalate dehydrogenase low > 34

Not shown: 0 genomes with orthologs for PP_5155 only; 37 genomes with orthologs for PP_1988 only