Conservation of cofitness between PP_5155 and PP_1985 in Pseudomonas putida KT2440

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase 1.0 PP_1985 3-isopropylmalate dehydratase large subunit 0.77 12
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.90 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.85 14
Pseudomonas syringae pv. syringae B728a 0.94 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.87 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.90 10
Pseudomonas syringae pv. syringae B728a ΔmexB 0.94 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.87 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.92 8
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_08510 3-phosphoglycerate dehydrogenase 0.89 AO353_20620 isopropylmalate isomerase 0.84 11
Pseudomonas fluorescens FW300-N1B4 0.92 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.90 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.83 15
Pseudomonas sp. S08-1 0.92 OH686_11280 D-3-phosphoglycerate dehydrogenase 0.86 OH686_04480 3-isopropylmalate dehydratase large subunit low > 80
Pseudomonas stutzeri RCH2 0.92 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases 0.88 Psest_2591 3-isopropylmalate dehydratase, large subunit — —
Pseudomonas sp. RS175 0.91 PFR28_04842 D-3-phosphoglycerate dehydrogenase 0.89 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.62 8
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS28695 phosphoglycerate dehydrogenase 0.89 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.36 33
Pseudomonas fluorescens SBW25 0.91 PFLU_RS28695 phosphoglycerate dehydrogenase 0.89 PFLU_RS20580 3-isopropylmalate dehydratase large subunit low > 109
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.89 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.84 12
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_10300 3-phosphoglycerate dehydrogenase 0.89 AO356_21400 isopropylmalate isomerase 0.88 14
Pseudomonas simiae WCS417 0.91 PS417_27040 3-phosphoglycerate dehydrogenase 0.89 PS417_18600 isopropylmalate isomerase 0.82 16
Variovorax sp. OAS795 0.80 ABID97_RS07235 phosphoglycerate dehydrogenase 0.69 ABID97_RS08465 3-isopropylmalate dehydratase large subunit — —
Acidovorax sp. GW101-3H11 0.79 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.67 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 79
Marinobacter adhaerens HP15 0.77 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein 0.78 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain — —
Variovorax sp. SCN45 0.77 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.68 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.75 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.67 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 90
Acinetobacter radioresistens SK82 0.71 MPMX26_02773 D-3-phosphoglycerate dehydrogenase 0.72 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.85 34
Alteromonas macleodii MIT1002 0.69 MIT1002_02993 D-3-phosphoglycerate dehydrogenase 0.58 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.84 37
Shewanella amazonensis SB2B 0.69 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.59 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.86 34
Shewanella oneidensis MR-1 0.68 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) 0.59 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.89 17
Shewanella loihica PV-4 0.68 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.59 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.98 10
Shewanella sp. ANA-3 0.68 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.59 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.87 25
Klebsiella michiganensis M5al 0.66 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase 0.60 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.80 26
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS09635 phosphoglycerate dehydrogenase 0.48 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.93 26
Escherichia coli ECOR38 0.66 HEPCGN_18760 serA phosphoglycerate dehydrogenase 0.61 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 85
Escherichia coli ECRC102 0.66 NIAGMN_17225 serA phosphoglycerate dehydrogenase 0.61 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1 — —
Escherichia coli ECRC98 0.66 JDDGAC_23100 serA phosphoglycerate dehydrogenase 0.61 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 — —
Escherichia coli ECRC101 0.66 OKFHMN_19460 serA phosphoglycerate dehydrogenase 0.61 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 — —
Escherichia fergusonii Becca 0.66 EFB2_00990 D-3-phosphoglycerate dehydrogenase 0.60 EFB2_03973 3-isopropylmalate dehydratase large subunit low > 86
Escherichia coli ECOR27 0.66 NOLOHH_11370 serA phosphoglycerate dehydrogenase 0.61 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase 0.61 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit low > 73
Escherichia coli Nissle 1917 0.66 ECOLIN_RS16210 phosphoglycerate dehydrogenase 0.61 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit low > 52
Serratia liquefaciens MT49 0.66 IAI46_20900 phosphoglycerate dehydrogenase 0.59 IAI46_03345 3-isopropylmalate dehydratase large subunit low > 86
Escherichia coli ECRC101 0.66 MCAODC_09980 serA phosphoglycerate dehydrogenase 0.61 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 — —
Escherichia coli BW25113 0.66 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) 0.61 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.86 28
Escherichia coli ECRC62 0.66 BNILDI_09905 serA phosphoglycerate dehydrogenase 0.61 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 — —
Escherichia coli BL21 0.66 ECD_02744 D-3-phosphoglycerate dehydrogenase 0.61 ECD_00074 3-isopropylmalate dehydratase large subunit 0.67 32
Escherichia coli ECRC99 0.66 KEDOAH_08680 serA phosphoglycerate dehydrogenase 0.61 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1 — —
Enterobacter asburiae PDN3 0.66 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases 0.61 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit — —
Enterobacter sp. TBS_079 0.65 MPMX20_03771 D-3-phosphoglycerate dehydrogenase 0.61 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.86 29
Erwinia tracheiphila SCR3 0.65 LU632_RS05855 serA phosphoglycerate dehydrogenase 0.56 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.59 69
Pantoea sp. MT58 0.65 IAI47_03725 phosphoglycerate dehydrogenase 0.61 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.91 8
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.61 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 78
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS03185 phosphoglycerate dehydrogenase 0.60 LRK54_RS07375 3-isopropylmalate dehydratase large subunit low > 59
Rhodanobacter denitrificans MT42 0.65 LRK55_RS02935 phosphoglycerate dehydrogenase 0.60 LRK55_RS07105 3-isopropylmalate dehydratase large subunit low > 63
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_10055 serA phosphoglycerate dehydrogenase 0.47 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit low > 52
Rahnella sp. WP5 0.65 EX31_RS21470 phosphoglycerate dehydrogenase 0.62 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.81 32
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.84 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.82 12
Dickeya dianthicola ME23 0.64 DZA65_RS19540 phosphoglycerate dehydrogenase 0.60 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.75 12
Kangiella aquimarina DSM 16071 0.64 B158DRAFT_0518 Phosphoglycerate dehydrogenase and related dehydrogenases 0.76 B158DRAFT_1319 3-isopropylmalate dehydratase, large subunit low > 40
Dickeya dadantii 3937 0.64 DDA3937_RS18480 phosphoglycerate dehydrogenase 0.60 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.89 5
Dickeya dianthicola 67-19 0.64 HGI48_RS18400 phosphoglycerate dehydrogenase 0.60 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.81 9
Pectobacterium carotovorum WPP14 0.64 HER17_RS02725 phosphoglycerate dehydrogenase 0.61 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.90 22
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_12555 phosphoglycerate dehydrogenase 0.58 CSW01_12605 3-isopropylmalate dehydratase large subunit low > 62
Lysobacter sp. OAE881 0.62 ABIE51_RS13245 phosphoglycerate dehydrogenase 0.48 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.89 33
Azospirillum sp. SherDot2 0.60 MPMX19_00753 D-3-phosphoglycerate dehydrogenase 0.66 MPMX19_01998 3-isopropylmalate dehydratase large subunit — —
Rhizobium sp. OAE497 0.59 ABIE40_RS30040 phosphoglycerate dehydrogenase 0.63 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit low > 107
Azospirillum brasilense Sp245 0.59 AZOBR_RS10940 3-phosphoglycerate dehydrogenase 0.66 AZOBR_RS03545 isopropylmalate isomerase — —
Rhodospirillum rubrum S1H 0.58 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) 0.66 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) — —
Bosea sp. OAE506 0.55 ABIE41_RS08410 phosphoglycerate dehydrogenase 0.63 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit — —
Castellaniella sp019104865 MT123 0.50 ABCV34_RS15150 phosphoglycerate dehydrogenase 0.72 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS27010 D-3-phosphoglycerate dehydrogenase 0.72 RR42_RS14400 isopropylmalate isomerase low > 128
Bifidobacterium breve UCC2003 0.44 BBR_RS16970 phosphoglycerate dehydrogenase 0.54 BBR_RS19630 3-isopropylmalate dehydratase large subunit low > 34

Not shown: 0 genomes with orthologs for PP_5155 only; 37 genomes with orthologs for PP_1985 only