Conservation of cofitness between PP_0937 and PP_1871 in Pseudomonas putida KT2440

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0937 endoribonuclease G (RNAse G) 1.0 PP_1871 Protease HtpX 0.54 6
Pseudomonas simiae WCS417 0.92 PS417_04270 ribonuclease G 0.89 PS417_08555 protease HtpX — —
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_05230 ribonuclease G 0.92 AO353_19145 protease HtpX 0.40 30
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_07110 ribonuclease G 0.93 AO356_03095 protease HtpX low > 104
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3283 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.93 Pf6N2E2_2447 Probable protease htpX homolog (EC 3.4.24.-) 0.45 9
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS04325 ribonuclease G 0.89 PFLU_RS08505 protease HtpX 0.41 37
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_5029 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.92 PfGW456L13_2250 Probable protease htpX homolog (EC 3.4.24.-) low > 87
Pseudomonas fluorescens SBW25 0.91 PFLU_RS04325 ribonuclease G 0.89 PFLU_RS08505 protease HtpX low > 109
Pseudomonas sp. RS175 0.91 PFR28_00158 Ribonuclease G 0.93 PFR28_00983 Protease HtpX low > 88
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_1095 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.92 Pf1N1B4_262 Probable protease htpX homolog (EC 3.4.24.-) 0.51 7
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_4159 RNAse G 0.91 Psyr_3616 Heat shock protein, Metallo peptidase, MEROPS family M48B low > 86
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_4159 RNAse G 0.91 Psyr_3616 Heat shock protein, Metallo peptidase, MEROPS family M48B low > 86
Pseudomonas sp. S08-1 0.89 OH686_08595 Ribonuclease G 0.82 OH686_22565 Protease HtpX low > 80
Pseudomonas stutzeri RCH2 0.89 Psest_3323 ribonuclease, Rne/Rng family 0.86 Psest_1770 Zn-dependent protease with chaperone function — —
Marinobacter adhaerens HP15 0.68 HP15_2451 ribonuclease, Rne/Rng family 0.67 HP15_2097 protease HtpX-like protein low > 73
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_2069 ribonuclease, Rne/Rng family 0.67 B158DRAFT_2016 Zn-dependent protease with chaperone function low > 40
Rhodanobacter sp. FW510-T8 0.61 OKGIIK_10290 rng ribonuclease G 0.48 OKGIIK_03645 htpX protease HtpX low > 52
Lysobacter sp. OAE881 0.59 ABIE51_RS06785 ribonuclease G 0.51 ABIE51_RS13515 protease HtpX low > 62
Dyella japonica UNC79MFTsu3.2 0.59 ABZR86_RS21730 ribonuclease G 0.50 ABZR86_RS00580 protease HtpX low > 74
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.1880.1 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.52 Xcc-8004.2262.1 Probable protease htpX homolog (EC 3.4.24.-) low > 74
Herbaspirillum seropedicae SmR1 0.58 HSERO_RS17790 ribonuclease 0.50 HSERO_RS09810 heat shock protein HtpX — —
Dechlorosoma suillum PS 0.58 Dsui_0434 ribonuclease, Rne/Rng family 0.51 Dsui_1149 Zn-dependent protease with chaperone function low > 51
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_02205 ribonuclease E/G 0.44 CSW01_05670 protease HtpX low > 62
Rhodanobacter denitrificans MT42 0.58 LRK55_RS03155 ribonuclease G 0.49 LRK55_RS14540 protease HtpX low > 63
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS03405 ribonuclease G 0.50 LRK54_RS14825 protease HtpX 0.78 55
Klebsiella michiganensis M5al 0.58 BWI76_RS25480 ribonuclease E/G 0.45 BWI76_RS17970 zinc metalloprotease HtpX low > 92
Dickeya dadantii 3937 0.57 DDA3937_RS01450 ribonuclease G 0.46 DDA3937_RS11460 protease HtpX low > 74
Acinetobacter radioresistens SK82 0.57 MPMX26_00646 Ribonuclease G 0.64 MPMX26_00808 Protease HtpX — —
Dickeya dianthicola ME23 0.57 DZA65_RS01430 ribonuclease G 0.46 DZA65_RS11840 protease HtpX low > 75
Dickeya dianthicola 67-19 0.57 HGI48_RS01370 ribonuclease G 0.46 HGI48_RS11505 protease HtpX low > 71
Rahnella sp. WP5 0.57 EX31_RS12255 ribonuclease G 0.45 EX31_RS24885 protease HtpX — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF2138 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.46 GFF2844 Probable protease HtpX (EC 3.4.24.-) — —
Enterobacter asburiae PDN3 0.57 EX28DRAFT_3297 ribonuclease, Rne/Rng family 0.46 EX28DRAFT_0727 Zn-dependent protease with chaperone function low > 76
Enterobacter sp. TBS_079 0.57 MPMX20_04153 Ribonuclease G 0.45 MPMX20_02736 Protease HtpX low > 85
Pantoea sp. MT58 0.57 IAI47_02455 ribonuclease G 0.45 IAI47_08710 protease HtpX low > 76
Escherichia coli ECRC102 0.57 NIAGMN_15505 rng ribonuclease G 0.45 NIAGMN_01590 htpX protease HtpX — —
Escherichia fergusonii Becca 0.57 EFB2_00584 Ribonuclease G 0.45 EFB2_02172 Protease HtpX low > 86
Escherichia coli ECRC98 0.57 JDDGAC_21370 rng ribonuclease G 0.45 JDDGAC_01045 htpX protease HtpX — —
Pectobacterium carotovorum WPP14 0.57 HER17_RS20150 ribonuclease G 0.45 HER17_RS11545 protease HtpX low > 75
Escherichia coli ECRC101 0.57 OKFHMN_17745 rng ribonuclease G 0.45 OKFHMN_26470 htpX protease HtpX — —
Escherichia coli ECRC62 0.57 BNILDI_01990 rng ribonuclease G 0.45 BNILDI_15775 htpX protease HtpX — —
Escherichia coli ECOR27 0.57 NOLOHH_09530 rng ribonuclease G 0.45 NOLOHH_16980 htpX protease HtpX — —
Escherichia coli ECOR38 0.57 HEPCGN_16610 rng ribonuclease G 0.45 HEPCGN_04870 htpX protease HtpX low > 85
Escherichia coli Nissle 1917 0.57 ECOLIN_RS18605 ribonuclease G 0.45 ECOLIN_RS10185 protease HtpX — —
Escherichia coli BW25113 0.57 b3247 cafA bundles of cytoplasmic filaments (VIMSS) 0.45 b1829 htpX heat shock protein HtpX (NCBI) low > 76
Escherichia coli BL21 0.57 ECD_03106 ribonuclease G 0.45 ECD_01800 putative endopeptidase low > 60
Escherichia coli ECRC101 0.57 MCAODC_08265 rng ribonuclease G 0.45 MCAODC_18935 htpX protease HtpX — —
Escherichia coli ECRC99 0.57 KEDOAH_10405 rng ribonuclease G 0.45 KEDOAH_01635 htpX protease HtpX — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_00458 Ribonuclease G 0.45 OHPLBJKB_01902 Protease HtpX low > 73
Shewanella sp. ANA-3 0.57 Shewana3_3644 ribonuclease G (RefSeq) 0.51 Shewana3_2512 heat shock protein HtpX (RefSeq) 0.40 55
Serratia liquefaciens MT49 0.56 IAI46_22700 ribonuclease G 0.46 IAI46_10810 protease HtpX — —
Shewanella oneidensis MR-1 0.56 SO4094 cafA ribonuclease G (NCBI ptt file) 0.50 SO2728 htpX peptidase HtpX (NCBI ptt file) low > 76
Erwinia tracheiphila SCR3 0.56 LU632_RS21430 rng ribonuclease G 0.42 LU632_RS13240 htpX protease HtpX — —
Shewanella loihica PV-4 0.56 Shew_0407 ribonuclease G (RefSeq) 0.51 Shew_1723 heat shock protein HtpX (RefSeq) low > 60
Shewanella amazonensis SB2B 0.56 Sama_0471 ribonuclease G (RefSeq) 0.51 Sama_1443 heat shock protein HtpX (RefSeq) — —
Castellaniella sp019104865 MT123 0.55 ABCV34_RS02480 ribonuclease G 0.49 ABCV34_RS02205 protease HtpX — —
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS04700 ribonuclease G 0.49 RR42_RS19940 heat-shock protein HtpX low > 128
Ralstonia solanacearum GMI1000 0.55 RS_RS11025 ribonuclease G 0.16 RS_RS00370 protease HtpX — —
Acidovorax sp. GW101-3H11 0.54 Ac3H11_2416 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.44 Ac3H11_1965 Heat shock protease low > 79
Variovorax sp. SCN45 0.53 GFF295 Ribonuclease G 0.44 GFF4554 Protease HtpX low > 127
Variovorax sp. OAS795 0.53 ABID97_RS16705 ribonuclease G 0.44 ABID97_RS06055 protease HtpX low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF4531 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.45 GFF526 Heat shock protease low > 90
Fusobacterium nucleatum SB010 0.25 HUW76_02260 ribonuclease E/G 0.23 HUW76_05515 M48 family metalloprotease low > 35

Not shown: 10 genomes with orthologs for PP_0937 only; 7 genomes with orthologs for PP_1871 only