Conservation of cofitness between PP_5114 and PP_1805 in Pseudomonas putida KT2440

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5114 putative adenine methyltransferase 1.0 PP_1805 Polysaccharide biosynthesis protein 0.53 20
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.75 Psyr_3636 Polysaccharide biosynthesis protein CapD low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.75 Psyr_3636 Polysaccharide biosynthesis protein CapD 0.41 29
Pseudomonas stutzeri RCH2 0.66 Psest_0255 RNA methyltransferase, RsmD family 0.70 Psest_1825 Predicted nucleoside-diphosphate sugar epimerases — —
Pseudomonas sp. S08-1 0.65 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.70 OH686_20915 nucleotide sugar epimerase/dehydratase WbpM low > 80
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.74 Pf6N2E2_2506 nucleotide sugar epimerase/dehydratase WbpM low > 103
Pseudomonas fluorescens SBW25 0.63 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.76 PFLU_RS08190 polysaccharide biosynthesis protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.76 PFLU_RS08190 polysaccharide biosynthesis protein 0.28 21
Pseudomonas sp. RS175 0.62 PFR28_04262 Ribosomal RNA small subunit methyltransferase D 0.75 PFR28_00932 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase low > 88
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.75 AO356_03345 hypothetical protein low > 104
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.78 PfGW456L13_2191 nucleotide sugar epimerase/dehydratase WbpM low > 87
Pseudomonas simiae WCS417 0.62 PS417_26825 16S rRNA methyltransferase 0.73 PS417_08190 membrane protein — —
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.78 AO353_01970 hypothetical protein low > 101
Dickeya dianthicola 67-19 0.46 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase 0.38 HGI48_RS03510 polysaccharide biosynthesis protein low > 71
Dickeya dadantii 3937 0.46 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase 0.38 DDA3937_RS03410 polysaccharide biosynthesis protein low > 74
Dickeya dianthicola ME23 0.46 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase 0.38 DZA65_RS03625 polysaccharide biosynthesis protein low > 75
Marinobacter adhaerens HP15 0.44 HP15_3491 conserved hypothetical protein 0.38 HP15_2383 nucleotide sugar epimerase/dehydratase low > 73
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.38 CSW01_01350 polysaccharide biosynthesis protein low > 62
Shewanella oneidensis MR-1 0.43 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.43 SO3171 polysaccharide biosynthesis protein (NCBI ptt file) low > 76
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.28 OKGIIK_07240 flaA1 polysaccharide biosynthesis protein 0.53 29
Rhodanobacter denitrificans MT42 0.39 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.26 LRK55_RS17915 nucleoside-diphosphate sugar epimerase/dehydratase low > 63
Shewanella amazonensis SB2B 0.39 Sama_3469 hypothetical protein (RefSeq) 0.43 Sama_2244 polysaccharide biosynthesis protein (RefSeq) low > 62
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.26 ABZR86_RS05540 nucleoside-diphosphate sugar epimerase/dehydratase low > 74
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.26 LRK54_RS18060 polysaccharide biosynthesis protein low > 59
Enterobacter asburiae PDN3 0.39 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.44 EX28DRAFT_0519 Predicted nucleoside-diphosphate sugar epimerases low > 76
Dechlorosoma suillum PS 0.35 Dsui_1027 RNA methyltransferase, RsmD family 0.28 Dsui_0400 putative nucleoside-diphosphate sugar epimerase 0.40 33
Acinetobacter radioresistens SK82 0.35 MPMX26_02312 Ribosomal RNA small subunit methyltransferase D 0.34 MPMX26_00062 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase low > 36
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS02815 methyltransferase 0.27 BPHYT_RS04385 nucleoside-diphosphate sugar oxidoreductase low > 109
Lysobacter sp. OAE881 0.35 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.25 ABIE51_RS09370 nucleoside-diphosphate sugar epimerase/dehydratase low > 62
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.27 QEN71_RS25590 nucleoside-diphosphate sugar epimerase/dehydratase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.27 H281DRAFT_04851 NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC low > 103
Castellaniella sp019104865 MT123 0.33 ABCV34_RS10145 RsmD family RNA methyltransferase 0.26 ABCV34_RS13035 nucleoside-diphosphate sugar epimerase/dehydratase low > 48
Paraburkholderia graminis OAS925 0.32 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase 0.27 ABIE53_001163 FlaA1/EpsC-like NDP-sugar epimerase low > 113
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS20695 methyltransferase 0.43 HSERO_RS21110 dTDP-glucose 4,6-dehydratase low > 78
Acidovorax sp. GW101-3H11 0.29 Ac3H11_3873 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.23 Ac3H11_1539 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) — —
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS01990 methyltransferase 0.43 RR42_RS15825 capsular biosynthesis protein low > 128
Ralstonia solanacearum PSI07 0.27 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.35 RPSI07_RS04445 polysaccharide biosynthesis protein low > 81
Ralstonia solanacearum IBSBF1503 0.27 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.36 RALBFv3_RS19155 polysaccharide biosynthesis protein low > 76
Ralstonia solanacearum UW163 0.27 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.36 UW163_RS19975 polysaccharide biosynthesis protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.43 GFF1865 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) low > 90
Ralstonia solanacearum GMI1000 0.26 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.36 RS_RS21965 polysaccharide biosynthesis protein low > 80
Ralstonia sp. UNC404CL21Col 0.26 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.40 ABZR87_RS08730 nucleoside-diphosphate sugar epimerase/dehydratase low > 80
Fusobacterium nucleatum SB010 0.26 HUW76_03595 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.21 HUW76_01325 polysaccharide biosynthesis protein low > 35
Bosea sp. OAE506 0.23 ABIE41_RS23215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.16 ABIE41_RS03855 nucleoside-diphosphate sugar epimerase/dehydratase — —
Rhodospirillum rubrum S1H 0.22 Rru_A0653 hypothetical protein (NCBI) 0.23 Rru_A3656 Polysaccharide biosynthesis protein CapD (NCBI) — —
Dinoroseobacter shibae DFL-12 0.22 Dshi_0115 putative methyltransferase (RefSeq) 0.30 Dshi_3857 polysaccharide biosynthesis protein CapD (RefSeq) low > 64
Azospirillum sp. SherDot2 0.22 MPMX19_01626 Ribosomal RNA small subunit methyltransferase D 0.24 MPMX19_01807 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase — —
Rhodopseudomonas palustris CGA009 0.22 TX73_005985 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.19 TX73_020640 nucleoside-diphosphate sugar epimerase/dehydratase low > 86
Magnetospirillum magneticum AMB-1 0.22 AMB_RS20860 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.25 AMB_RS00500 polysaccharide biosynthesis protein — —
Bacteroides ovatus ATCC 8483 0.20 BACOVA_04638 putative RNA methyltransferase, RsmD family 0.22 BACOVA_03688 polysaccharide biosynthesis protein low > 94
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS12725 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.25 CA265_RS19185 polysaccharide biosynthesis protein low > 88

Not shown: 35 genomes with orthologs for PP_5114 only; 8 genomes with orthologs for PP_1805 only