Conservation of cofitness between PP_3118 and PP_0872 in Pseudomonas putida KT2440

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3118 DNA linked enzyme involved in DNA repair 1.0 PP_0872 Peptide chain release factor 3 0.20 5
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_2086 DNA polymerase-like protein PA0670 0.93 Pf6N2E2_3327 Peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_22710 DNA repair nucleotidyltransferase 0.95 AO353_05420 peptide chain release factor 3 low > 101
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_21815 DNA repair nucleotidyltransferase 0.95 AO356_07285 peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_5680 DNA polymerase-like protein PA0670 0.77 Pf1N1B4_1130 Peptide chain release factor 3 — —
Pseudomonas fluorescens GW456-L13 0.63 PfGW456L13_2821 DNA polymerase-like protein PA0670 0.95 PfGW456L13_5060 Peptide chain release factor 3 low > 87
Pseudomonas sp. RS175 0.63 PFR28_01354 Protein ImuB 0.95 PFR28_00118 Peptide chain release factor RF3 — —
Pseudomonas simiae WCS417 0.62 PS417_15585 DNA repair nucleotidyltransferase 0.95 PS417_04030 peptide chain release factor 3 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_2522 conserved hypothetical protein 0.95 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_2522 conserved hypothetical protein 0.95 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas stutzeri RCH2 0.61 Psest_1979 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.94 Psest_3351 peptide chain release factor 3 low > 67
Pseudomonas fluorescens SBW25-INTG 0.60 PFLU_RS17570 DNA polymerase Y family protein 0.95 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens SBW25 0.60 PFLU_RS17570 DNA polymerase Y family protein 0.95 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas sp. S08-1 0.55 OH686_02405 DNA polymerase IV-like protein ImuB 0.92 OH686_08765 peptide chain release factor 3 — —
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS18205 DNA polymerase Y family protein 0.64 ABZR86_RS19000 peptide chain release factor 3 — —
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.3896.1 hypothetical protein 0.62 Xcc-8004.1590.1 Peptide chain release factor 3 — —
Lysobacter sp. OAE881 0.43 ABIE51_RS11845 DNA polymerase Y family protein 0.63 ABIE51_RS16210 peptide chain release factor 3 — —
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS00240 DNA polymerase Y family protein 0.64 LRK54_RS05380 peptide chain release factor 3 — —
Rhodanobacter denitrificans MT42 0.41 LRK55_RS18140 DNA polymerase Y family protein 0.64 LRK55_RS05155 peptide chain release factor 3 — —
Marinobacter adhaerens HP15 0.25 HP15_1334 Error-prone polymerase for DNA repair (imuB or polY like) (from data) 0.69 HP15_541 peptide chain release factor 3 low > 73
Dechlorosoma suillum PS 0.17 Dsui_2266 nucleotidyltransferase/DNA polymerase involved in DNA repair 0.61 Dsui_2418 peptide chain release factor 3 — —
Paraburkholderia sabiae LMG 24235 0.17 QEN71_RS43590 DNA polymerase Y family protein 0.53 QEN71_RS17200 peptide chain release factor 3 low > 153
Paraburkholderia graminis OAS925 0.15 ABIE53_000205 protein ImuB 0.54 ABIE53_004717 peptide chain release factor 3 low > 113
Paraburkholderia bryophila 376MFSha3.1 0.15 H281DRAFT_04986 protein ImuB 0.54 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) low > 103
Cupriavidus basilensis FW507-4G11 0.14 RR42_RS32800 nucleotidyltransferase 0.62 RR42_RS37475 peptide chain release factor 3 low > 128
Ralstonia solanacearum GMI1000 0.14 RS_RS20935 DNA polymerase Y family protein 0.60 RS_RS25080 peptide chain release factor 3 low > 80
Herbaspirillum seropedicae SmR1 0.13 HSERO_RS11285 DNA polymerase 0.64 HSERO_RS14640 peptide chain release factor 3 low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.13 GFF4008 DNA polymerase-like protein PA0670 0.53 GFF768 Peptide chain release factor 3 low > 90
Dinoroseobacter shibae DFL-12 0.13 Dshi_3997 hypothetical protein (RefSeq) 0.44 Dshi_1336 peptide chain release factor 3 (RefSeq) low > 64
Ralstonia solanacearum PSI07 0.13 RPSI07_RS03295 DNA polymerase Y family protein 0.60 RPSI07_RS07810 peptide chain release factor 3 low > 81
Ralstonia sp. UNC404CL21Col 0.13 ABZR87_RS20565 DNA polymerase Y family protein 0.61 ABZR87_RS23485 peptide chain release factor 3 low > 80
Sinorhizobium meliloti 1021 0.12 SMc03789 hypothetical protein 0.50 SMc00427 peptide chain release factor RF-3 protein low > 103
Alteromonas macleodii MIT1002 0.12 MIT1002_00041 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.68 MIT1002_01192 Peptide chain release factor 3 0.46 13
Pedobacter sp. GW460-11-11-14-LB5 0.11 CA265_RS20505 nucleotidyltransferase 0.46 CA265_RS18435 peptide chain release factor 3 low > 88
Bosea sp. OAE506 0.11 ABIE41_RS17350 DNA polymerase Y family protein 0.48 ABIE41_RS06180 peptide chain release factor 3 — —
Ralstonia solanacearum IBSBF1503 0.11 RALBFv3_RS19920 DNA polymerase Y family protein 0.60 RALBFv3_RS23345 peptide chain release factor 3 low > 76
Ralstonia solanacearum UW163 0.11 UW163_RS19255 DNA polymerase Y family protein 0.60 UW163_RS16595 peptide chain release factor 3 — —
Sphingomonas koreensis DSMZ 15582 0.11 Ga0059261_2477 Nucleotidyltransferase/DNA polymerase involved in DNA repair 0.45 Ga0059261_2044 peptide chain release factor 3 low > 68
Variovorax sp. SCN45 0.11 GFF679 DNA polymerase-like protein PA0670 0.51 GFF2045 Peptide chain release factor 3 low > 127
Phaeobacter inhibens DSM 17395 0.10 PGA1_c00330 Error-prone polymerase for DNA repair (imuB or polY like) (from data) 0.45 PGA1_c10620 peptide chain release factor 3 — —
Caulobacter crescentus NA1000 Δfur 0.10 CCNA_03318 DNA polymerase Y-family protein ImuB 0.43 CCNA_01123 peptide chain release factor RF-3 low > 67
Caulobacter crescentus NA1000 0.10 CCNA_03318 DNA polymerase Y-family protein ImuB 0.43 CCNA_01123 peptide chain release factor RF-3 low > 66
Azospirillum sp. SherDot2 0.09 MPMX19_00258 Protein ImuB 0.48 MPMX19_01192 Peptide chain release factor 3 — —
Brevundimonas sp. GW460-12-10-14-LB2 0.09 A4249_RS05690 DNA polymerase Y family protein 0.44 A4249_RS15275 peptide chain release factor 3 low > 48
Magnetospirillum magneticum AMB-1 0.08 AMB_RS15105 DNA polymerase Y family protein 0.51 AMB_RS01375 peptide chain release factor 3 — —
Rhodopseudomonas palustris CGA009 0.07 TX73_009270 DNA polymerase Y family protein 0.47 TX73_011820 peptide chain release factor 3 low > 86
Acidovorax sp. GW101-3H11 0.07 Ac3H11_4194 DNA polymerase-like protein PA0670 0.51 Ac3H11_3041 Peptide chain release factor 3 — —
Agrobacterium fabrum C58 0.07 Atu3229 hypothetical protein 0.48 Atu0315 peptide chain release factor 3 — —

Not shown: 2 genomes with orthologs for PP_3118 only; 47 genomes with orthologs for PP_0872 only