Conservation of cofitness between PP_4701 and PP_0362 in Pseudomonas putida KT2440

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4701 glucose-6-phosphate isomerase 1.0 PP_0362 Biotin synthase 0.21 3
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_14370 glucose-6-phosphate isomerase 0.94 AO353_07525 biotin synthase 0.45 66
Pseudomonas simiae WCS417 0.90 PS417_23920 glucose-6-phosphate isomerase 0.93 PS417_26005 biotin synthase — —
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_2850 Glucose-6-phosphate isomerase (EC 5.3.1.9) 0.94 Pf1N1B4_2487 Biotin synthase (EC 2.8.1.6) low > 87
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_1518 Glucose-6-phosphate isomerase (EC 5.3.1.9) 0.93 PfGW456L13_1147 Biotin synthase (EC 2.8.1.6) — —
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_5150 Glucose-6-phosphate isomerase (EC 5.3.1.9) 0.94 Pf6N2E2_4759 Biotin synthase (EC 2.8.1.6) low > 103
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS25760 glucose-6-phosphate isomerase 0.93 PFLU_RS27650 biotin synthase BioB low > 109
Pseudomonas fluorescens SBW25 0.90 PFLU_RS25760 glucose-6-phosphate isomerase 0.93 PFLU_RS27650 biotin synthase BioB 0.60 19
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_16050 glucose-6-phosphate isomerase 0.94 AO356_14135 biotin synthase 0.51 38
Pseudomonas sp. RS175 0.90 PFR28_03724 Glucose-6-phosphate isomerase 0.94 PFR28_04103 Biotin synthase low > 88
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_0826 glucose-6-phosphate isomerase 0.94 Psyr_4687 biotin synthase 0.45 64
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_0826 glucose-6-phosphate isomerase 0.94 Psyr_4687 biotin synthase 0.58 18
Pseudomonas sp. S08-1 0.84 OH686_17230 Glucose-6-phosphate isomerase 0.93 OH686_10355 biotin synthase — —
Pseudomonas stutzeri RCH2 0.78 Psest_0993 Glucose-6-phosphate isomerase 0.92 Psest_0411 biotin synthetase low > 67
Marinobacter adhaerens HP15 0.57 HP15_322 glucose-6-phosphate isomerase 0.70 HP15_2486 biotin synthase — —
Shewanella sp. ANA-3 0.56 Shewana3_3148 pgi glucose-6-phosphate isomerase (RefSeq) 0.65 Shewana3_2519 biotin synthase (RefSeq) — —
Shewanella oneidensis MR-1 0.55 SO3547 pgi glucose-6-phosphate isomerase (NCBI ptt file) 0.65 SO2740 bioB biotin synthase (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.55 Sama_0912 pgi glucose-6-phosphate isomerase (RefSeq) 0.65 Sama_1438 biotin synthase (RefSeq) — —
Alteromonas macleodii MIT1002 0.54 MIT1002_03081 Glucose-6-phosphate isomerase 0.69 MIT1002_01379 Biotin synthase — —
Shewanella loihica PV-4 0.54 Shew_1088 pgi glucose-6-phosphate isomerase (RefSeq) 0.64 Shew_1719 biotin synthase (RefSeq) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.52 ABZR88_RS03585 glucose-6-phosphate isomerase 0.47 ABZR88_RS10190 biotin synthase BioB — —
Escherichia coli ECOR38 0.49 HEPCGN_11685 pgi glucose-6-phosphate isomerase 0.68 HEPCGN_01640 bioB biotin synthase BioB low > 85
Escherichia coli Nissle 1917 0.49 ECOLIN_RS23240 glucose-6-phosphate isomerase 0.68 ECOLIN_RS04130 biotin synthase BioB — —
Escherichia coli ECRC62 0.49 BNILDI_06185 pgi glucose-6-phosphate isomerase 0.68 BNILDI_21040 bioB biotin synthase BioB — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.49 Echvi_4036 Glucose-6-phosphate isomerase 0.52 Echvi_2566 biotin synthetase low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_04021 Glucose-6-phosphate isomerase 0.68 OHPLBJKB_02938 Biotin synthase low > 73
Escherichia coli ECRC101 0.49 MCAODC_03675 pgi glucose-6-phosphate isomerase 0.68 MCAODC_25615 bioB biotin synthase BioB — —
Escherichia coli BW25113 0.49 b4025 pgi glucose-6-phosphate isomerase (NCBI) 0.68 b0775 bioB biotin synthase (NCBI) low > 76
Escherichia coli ECRC98 0.49 JDDGAC_16800 pgi glucose-6-phosphate isomerase 0.68 JDDGAC_10035 bioB biotin synthase BioB — —
Escherichia coli ECRC99 0.49 KEDOAH_14985 pgi glucose-6-phosphate isomerase 0.68 KEDOAH_21510 bioB biotin synthase BioB — —
Escherichia fergusonii Becca 0.49 EFB2_04577 Glucose-6-phosphate isomerase 0.68 EFB2_03330 Biotin synthase low > 86
Escherichia coli ECRC101 0.49 OKFHMN_13175 pgi glucose-6-phosphate isomerase 0.68 OKFHMN_06400 bioB biotin synthase BioB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.49 GFF1396 Glucose-6-phosphate isomerase (EC 5.3.1.9) 0.67 GFF671 Biotin synthase (EC 2.8.1.6) low > 78
Escherichia coli BL21 0.49 ECD_03897 glucosephosphate isomerase 0.68 ECD_00742 biotin synthase low > 60
Escherichia coli ECRC102 0.49 NIAGMN_10925 pgi glucose-6-phosphate isomerase 0.68 NIAGMN_04445 bioB biotin synthase BioB — —
Klebsiella michiganensis M5al 0.49 BWI76_RS01800 glucose-6-phosphate isomerase 0.68 BWI76_RS08760 biotin synthase low > 92
Escherichia coli ECOR27 0.49 NOLOHH_05335 pgi glucose-6-phosphate isomerase 0.68 NOLOHH_22770 bioB biotin synthase BioB low > 57
Enterobacter sp. TBS_079 0.49 MPMX20_00241 Glucose-6-phosphate isomerase 0.67 MPMX20_01403 Biotin synthase low > 85
Enterobacter asburiae PDN3 0.49 EX28DRAFT_4318 Glucose-6-phosphate isomerase 0.66 EX28DRAFT_2216 biotin synthase (EC 2.8.1.6) low > 76
Pectobacterium carotovorum WPP14 0.49 HER17_RS02340 glucose-6-phosphate isomerase 0.67 HER17_RS13460 biotin synthase BioB low > 75
Magnetospirillum magneticum AMB-1 0.48 AMB_RS22330 glucose-6-phosphate isomerase 0.59 AMB_RS13865 biotin synthase — —
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS05515 glucose-6-phosphate isomerase 0.51 HSERO_RS12235 biotin synthase low > 78
Pontibacter actiniarum KMM 6156, DSM 19842 0.48 CA264_07470 glucose-6-phosphate isomerase 0.48 CA264_02425 biotin synthase BioB low > 74
Rhodanobacter denitrificans MT42 0.47 LRK55_RS08520 glucose-6-phosphate isomerase 0.55 LRK55_RS09900 biotin synthase BioB — —
Dechlorosoma suillum PS 0.46 Dsui_1239 glucose-6-phosphate isomerase 0.53 Dsui_1297 biotin synthetase — —
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS08755 glucose-6-phosphate isomerase 0.55 LRK54_RS10260 biotin synthase BioB — —
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_15520 pgi glucose-6-phosphate isomerase 0.56 OKGIIK_13650 bioB biotin synthase BioB low > 52
Ralstonia solanacearum UW163 0.46 UW163_RS14610 glucose-6-phosphate isomerase 0.60 UW163_RS03115 biotin synthase BioB — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS01300 glucose-6-phosphate isomerase 0.60 RALBFv3_RS10465 biotin synthase BioB low > 76
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS09060 glucose-6-phosphate isomerase 0.58 RR42_RS00940 biotin synthase low > 128
Rhizobium sp. OAE497 0.44 ABIE40_RS02150 glucose-6-phosphate isomerase 0.55 ABIE40_RS21075 biotin synthase BioB — —
Agrobacterium fabrum C58 0.44 Atu0404 glucose-6-phosphate isomerase 0.57 Atu3997 biotin synthetase — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS09500 glucose-6-phosphate isomerase 0.58 BPHYT_RS02150 biotin synthase low > 109
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS21935 glucose-6-phosphate isomerase 0.59 QEN71_RS01085 biotin synthase BioB — —
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_00906 glucose-6-phosphate isomerase 0.58 H281DRAFT_02097 biotin synthase — —
Mycobacterium tuberculosis H37Rv 0.43 Rv0946c Probable glucose-6-phosphate isomerase Pgi (GPI) (phosphoglucose isomerase) (phosphohexose isomerase) (phi) 0.26 Rv1589 Probable biotin synthetase BioB — —
Acidovorax sp. GW101-3H11 0.40 Ac3H11_2077 Glucose-6-phosphate isomerase (EC 5.3.1.9) 0.53 Ac3H11_2272 Biotin synthase (EC 2.8.1.6) — —
Variovorax sp. SCN45 0.39 GFF5267 Glucose-6-phosphate isomerase (EC 5.3.1.9) 0.52 GFF937 Biotin synthase (EC 2.8.1.6) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF5497 Glucose-6-phosphate isomerase (EC 5.3.1.9) 0.56 GFF3992 Biotin synthase (EC 2.8.1.6) low > 90
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS00830 glucose-6-phosphate isomerase 0.58 ABZR86_RS15840 biotin synthase BioB low > 74
Lysobacter sp. OAE881 0.30 ABIE51_RS08040 glucose-6-phosphate isomerase 0.61 ABIE51_RS01140 biotin synthase BioB low > 62
Castellaniella sp019104865 MT123 0.29 ABCV34_RS11120 glucose-6-phosphate isomerase 0.54 ABCV34_RS15280 biotin synthase BioB — —
Sphingomonas koreensis DSMZ 15582 0.29 Ga0059261_1948 Glucose-6-phosphate isomerase 0.54 Ga0059261_3989 biotin synthase (EC 2.8.1.6) low > 68

Not shown: 6 genomes with orthologs for PP_4701 only; 29 genomes with orthologs for PP_0362 only