Conservation of cofitness between PFLU_RS16375 and PFLU_RS03025 in Pseudomonas fluorescens SBW25

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS16375 aldo/keto reductase 1.0 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.48 6
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS16375 aldo/keto reductase 1.00 PFLU_RS03025 tRNA dihydrouridine synthase DusB low > 109
Pseudomonas simiae WCS417 0.95 PS417_14445 aldo/keto reductase 0.99 PS417_02950 tRNA-dihydrouridine synthase B low > 88
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_4693 Oxidoreductase 0.91 Pf1N1B4_1313 tRNA dihydrouridine synthase B (EC 1.-.-.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_23805 aldo/keto reductase 0.91 AO353_13660 tRNA-dihydrouridine synthase B low > 101
Pseudomonas fluorescens GW456-L13 0.80 PfGW456L13_2966 Aldo-keto reductase 0.90 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.26 82
Serratia liquefaciens MT49 0.72 IAI46_02855 aldo/keto reductase 0.54 IAI46_22775 tRNA dihydrouridine synthase DusB low > 86
Pectobacterium carotovorum WPP14 0.72 HER17_RS18075 aldo/keto reductase 0.54 HER17_RS20235 tRNA dihydrouridine synthase DusB low > 75
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_1615 Aldo-keto reductase 0.88 Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-) low > 103
Dickeya dadantii 3937 0.70 DDA3937_RS03195 aldo/keto reductase 0.55 DDA3937_RS01375 tRNA dihydrouridine synthase DusB low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS03345 aldo/keto reductase 0.55 HGI48_RS01295 tRNA dihydrouridine synthase DusB low > 71
Pseudomonas fluorescens FW300-N2C3 0.70 AO356_23370 aldo/keto reductase 0.88 AO356_08215 tRNA-dihydrouridine synthase B low > 104
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_2519 Aldo/keto reductase 0.88 Psyr_4404 tRNA-U20-dihydrouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_2519 Aldo/keto reductase 0.88 Psyr_4404 tRNA-U20-dihydrouridine synthase low > 86
Rhodanobacter sp. FW510-T8 0.68 OKGIIK_13390 aldo/keto reductase 0.58 OKGIIK_11770 dusB tRNA dihydrouridine synthase DusB low > 52
Dickeya dianthicola ME23 0.68 DZA65_RS03390 aldo/keto reductase 0.55 DZA65_RS01355 tRNA dihydrouridine synthase DusB low > 75
Rhodanobacter denitrificans MT42 0.68 LRK55_RS10155 aldo/keto reductase 0.58 LRK55_RS11875 tRNA dihydrouridine synthase DusB low > 63
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS10515 aldo/keto reductase 0.58 LRK54_RS12140 tRNA dihydrouridine synthase DusB low > 59
Dyella japonica UNC79MFTsu3.2 0.67 ABZR86_RS16200 aldo/keto reductase 0.58 ABZR86_RS11525 tRNA dihydrouridine synthase DusB low > 74
Rahnella sp. WP5 0.66 EX31_RS04125 aldo/keto reductase 0.56 EX31_RS12180 tRNA dihydrouridine synthase DusB low > 89
Pseudomonas sp. RS175 0.66 PFR28_02364 Aldo-keto reductase YhdN 0.88 PFR28_05216 tRNA-dihydrouridine synthase B low > 88
Herbaspirillum seropedicae SmR1 0.66 HSERO_RS16785 aldo/keto reductase 0.61 HSERO_RS02050 tRNA-dihydrouridine synthase B low > 78
Pontibacter actiniarum KMM 6156, DSM 19842 0.63 CA264_05950 aldo/keto reductase 0.34 CA264_17860 tRNA dihydrouridine synthase DusB low > 74
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS20325 aldo/keto reductase 0.59 RR42_RS02730 tRNA-dihydrouridine synthase B low > 128
Agrobacterium fabrum C58 0.60 Atu0260 aldo-keto reductase 0.37 Atu1444 nitrogen regulation protein low > 89
Brevundimonas sp. GW460-12-10-14-LB2 0.59 A4249_RS07260 aldo/keto reductase 0.35 A4249_RS04810 tRNA dihydrouridine synthase DusB low > 48
Azospirillum sp. SherDot2 0.55 MPMX19_01216 Aldo-keto reductase IolS 0.45 MPMX19_01110 tRNA-dihydrouridine synthase B low > 112
Lysobacter sp. OAE881 0.53 ABIE51_RS11290 aldo/keto reductase 0.60 ABIE51_RS16450 tRNA dihydrouridine synthase DusB low > 62
Rhodopseudomonas palustris CGA009 0.49 TX73_015655 aldo/keto reductase 0.33 TX73_013410 tRNA dihydrouridine synthase DusB low > 86
Caulobacter crescentus NA1000 Δfur 0.49 CCNA_03097 aldo/keto reductase family protein 0.30 CCNA_01813 tRNA-dihydrouridine synthase low > 67
Caulobacter crescentus NA1000 0.49 CCNA_03097 aldo/keto reductase family protein 0.30 CCNA_01813 tRNA-dihydrouridine synthase low > 66
Escherichia fergusonii Becca 0.47 EFB2_03742 Aldo-keto reductase IolS 0.55 EFB2_00564 tRNA-dihydrouridine synthase B low > 86
Escherichia coli ECOR38 0.47 HEPCGN_07675 pdxI aldo/keto reductase 0.55 HEPCGN_16505 dusB tRNA dihydrouridine synthase DusB low > 87
Escherichia coli Nissle 1917 0.47 ECOLIN_RS26205 aldo/keto reductase 0.55 ECOLIN_RS18725 tRNA dihydrouridine synthase DusB — —
Rhizobium sp. OAE497 0.46 ABIE40_RS04910 aldo/keto reductase 0.36 ABIE40_RS09080 tRNA dihydrouridine synthase DusB low > 107
Variovorax sp. OAS795 0.44 ABID97_RS21725 aldo/keto reductase 0.57 ABID97_RS24735 tRNA dihydrouridine synthase DusB low > 91
Rhodospirillum rubrum S1H 0.44 Rru_A1059 Aldo/keto reductase (NCBI) 0.34 Rru_A1676 Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI) low > 58
Pantoea sp. MT58 0.43 IAI47_08360 aldo/keto reductase 0.52 IAI47_02385 tRNA dihydrouridine synthase DusB low > 76
Ralstonia solanacearum GMI1000 0.43 RS_RS01075 aldo/keto reductase 0.61 RS_RS02515 tRNA dihydrouridine synthase DusB low > 80
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS08510 aldo/keto reductase 0.32 ABZR88_RS22340 tRNA dihydrouridine synthase DusB low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS00435 aldo/keto reductase 0.33 CA265_RS21125 tRNA dihydrouridine synthase DusB low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.42 Echvi_4177 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 0.31 Echvi_1531 putative TIM-barrel protein, nifR3 family low > 79
Variovorax sp. SCN45 0.42 GFF3107 Oxidoreductase, aldo/keto reductase family 0.56 GFF2144 tRNA-dihydrouridine synthase DusB low > 127
Ralstonia solanacearum UW163 0.42 UW163_RS23080 aldo/keto reductase 0.61 UW163_RS01890 tRNA dihydrouridine synthase DusB — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS22535 aldo/keto reductase 0.61 RALBFv3_RS11695 tRNA dihydrouridine synthase DusB low > 76
Castellaniella sp019104865 MT123 0.42 ABCV34_RS02780 aldo/keto reductase 0.56 ABCV34_RS07960 tRNA dihydrouridine synthase DusB low > 48
Enterobacter sp. TBS_079 0.42 MPMX20_00046 Aldo-keto reductase IolS 0.55 MPMX20_04169 tRNA-dihydrouridine synthase B low > 85
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS08125 aldo/keto reductase 0.60 QEN71_RS26770 tRNA dihydrouridine synthase DusB low > 153
Azospirillum brasilense Sp245 0.41 AZOBR_RS21420 aldo/keto reductase 0.44 AZOBR_RS14420 tRNA-dihydrouridine synthase low > 97
Ralstonia solanacearum PSI07 0.41 RPSI07_RS00620 aldo/keto reductase 0.62 RPSI07_RS21520 tRNA dihydrouridine synthase DusB low > 81
Acidovorax sp. GW101-3H11 0.39 Ac3H11_4133 Aldo-keto reductase 0.52 Ac3H11_3996 tRNA dihydrouridine synthase B (EC 1.-.-.-) low > 79
Magnetospirillum magneticum AMB-1 0.39 AMB_RS01300 aldo/keto reductase 0.49 AMB_RS11940 tRNA dihydrouridine synthase DusB low > 64
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF3816 Aldo-keto reductase 0.54 GFF634 tRNA dihydrouridine synthase B (EC 1.-.-.-) low > 90
Bacteroides thetaiotaomicron VPI-5482 0.37 BT1115 aldo/keto reductase (NCBI ptt file) 0.31 BT3073 putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) low > 81
Klebsiella michiganensis M5al 0.36 BWI76_RS21735 aldehyde oxidase 0.55 BWI76_RS25565 tRNA dihydrouridine synthase DusB — —
Marinobacter adhaerens HP15 0.24 HP15_2827 oxidoreductase, aldo/keto reductase family 0.69 HP15_3225 tRNA-dihydrouridine synthase B low > 73
Synechococcus elongatus PCC 7942 0.22 Synpcc7942_0026 hypothetical protein 0.25 Synpcc7942_0283 Dihydrouridine synthase TIM-barrel protein nifR3 low > 38
Alteromonas macleodii MIT1002 0.13 MIT1002_03752 Oxidoreductase YdhF 0.61 MIT1002_03957 putative tRNA-dihydrouridine synthase low > 70

Not shown: 3 genomes with orthologs for PFLU_RS16375 only; 34 genomes with orthologs for PFLU_RS03025 only