Conservation of cofitness between NOLOHH_11130 and NOLOHH_09735 in Escherichia coli ECOR27

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR27 1.0 NOLOHH_11130 yggR Uncharacterized protein YggR 1.0 NOLOHH_09735 Ribosome hibernation promoting factor low > 75
Escherichia coli ECRC62 1.00 BNILDI_09710 yggR Uncharacterized protein YggR 1.00 BNILDI_01800 Ribosome hibernation promoting factor low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_00766 putative protein YggR 1.00 OHPLBJKB_00497 Ribosome hibernation promoting factor low > 73
Escherichia coli ECOR38 0.99 HEPCGN_18565 yggR Uncharacterized protein YggR 1.00 HEPCGN_16810 Ribosome hibernation promoting factor low > 87
Escherichia coli BW25113 0.98 b2950 yggR putative protein transport (VIMSS) 1.00 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) low > 76
Escherichia coli ECRC98 0.98 JDDGAC_22890 yggR Uncharacterized protein YggR 1.00 JDDGAC_21560 Ribosome hibernation promoting factor low > 86
Escherichia coli ECRC101 0.98 MCAODC_09780 yggR Uncharacterized protein YggR 1.00 MCAODC_08455 Ribosome hibernation promoting factor low > 87
Escherichia coli ECRC100 0.98 OKFHMN_19260 yggR Uncharacterized protein YggR 1.00 OKFHMN_17935 Ribosome hibernation promoting factor low > 80
Escherichia coli ECRC99 0.98 KEDOAH_08880 yggR Uncharacterized protein YggR 1.00 KEDOAH_10215 Ribosome hibernation promoting factor — —
Escherichia coli ECRC102 0.98 NIAGMN_17025 yggR Uncharacterized protein YggR 1.00 NIAGMN_15695 Ribosome hibernation promoting factor — —
Escherichia coli BL21 0.98 ECD_02780 putative PilT family AAA+ ATPase 1.00 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers low > 61
Escherichia fergusonii Becca 0.98 EFB2_00952 putative protein YggR 1.00 EFB2_00620 Ribosome hibernation promoting factor low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS16410 type IV pilus twitching motility protein PilT 1.00 ECOLIN_RS18430 ribosome hibernation promoting factor low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF3053 Twitching motility protein PilT 0.95 GFF2947 Ribosome hibernation protein YhbH low > 78
Enterobacter sp. TBS_079 0.74 MPMX20_03808 putative protein YggR 0.93 MPMX20_04109 Ribosome hibernation promoting factor low > 85
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2988 pilus retraction protein PilT 0.93 EX28DRAFT_3257 ribosomal subunit interface protein low > 76
Klebsiella michiganensis M5al 0.68 BWI76_RS24095 twitching motility protein PilT 0.91 BWI76_RS25270 ribosome hibernation promoting factor low > 92
Dickeya dadantii 3937 0.60 DDA3937_RS17295 type IV pilus twitching motility protein PilT 0.84 DDA3937_RS01525 ribosome hibernation promoting factor low > 74
Dickeya dianthicola ME23 0.60 DZA65_RS18430 type IV pilus twitching motility protein PilT 0.85 DZA65_RS01505 ribosome hibernation promoting factor low > 75
Dickeya dianthicola 67-19 0.60 HGI48_RS17340 type IV pilus twitching motility protein PilT 0.85 HGI48_RS01440 ribosome hibernation promoting factor low > 71
Pantoea sp. MT58 0.60 IAI47_03600 type IV pilus twitching motility protein PilT 0.82 IAI47_17190 ribosome hibernation promoting factor low > 76
Pectobacterium carotovorum WPP14 0.58 HER17_RS03815 type IV pilus twitching motility protein PilT 0.78 HER17_RS20065 ribosome hibernation promoting factor low > 75
Rahnella sp. WP5 0.55 EX31_RS02680 type IV pilus twitching motility protein PilT 0.82 EX31_RS12395 ribosome hibernation promoting factor low > 89
Serratia liquefaciens MT49 0.52 IAI46_21405 type IV pilus twitching motility protein PilT 0.80 IAI46_22475 ribosome hibernation promoting factor low > 86
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_02460 type IV pili twitching motility protein PilT 0.61 CSW01_12820 ribosome hibernation promoting factor low > 62
Dechlorosoma suillum PS 0.47 Dsui_0604 pilus retraction protein PilT 0.48 Dsui_0703 ribosomal subunit interface protein low > 51
Shewanella amazonensis SB2B 0.47 Sama_2476 twitching motility protein (RefSeq) 0.62 Sama_3089 ribosomal subunit interface protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.46 Shewana3_1195 pilus retraction ATPase PilT (RefSeq) 0.58 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) low > 73
Shewanella oneidensis MR-1 0.46 SO3351 pilT twitching motility protein PilT (NCBI ptt file) 0.57 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.46 MIT1002_03060 Twitching mobility protein 0.62 MIT1002_00826 Ribosome hibernation promoting factor low > 70
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_0195 pilus retraction protein PilT 0.66 B158DRAFT_2079 ribosomal subunit interface protein low > 40
Variovorax sp. OAS795 0.45 ABID97_RS00255 type IV pilus twitching motility protein PilT 0.43 ABID97_RS04490 ribosome-associated translation inhibitor RaiA low > 91
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_11130 pilT twitching motility protein PilT 0.42 OKGIIK_02260 raiA ribosomal subunit interface protein 0.72 37
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.1713.1 Twitching motility protein PilT 0.39 Xcc-8004.1661.1 Ribosome hibernation protein YhbH low > 74
Rhodanobacter denitrificans MT42 0.45 LRK55_RS04025 type IV pilus twitching motility protein PilT 0.43 LRK55_RS12570 ribosome-associated translation inhibitor RaiA low > 63
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS04255 type IV pilus twitching motility protein PilT 0.43 LRK54_RS12870 ribosome-associated translation inhibitor RaiA low > 59
Shewanella loihica PV-4 0.45 Shew_1138 twitching motility protein (RefSeq) 0.60 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) low > 60
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS10420 type IV pilus twitching motility protein PilT 0.39 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA low > 74
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS01220 type IV pilus twitching motility protein PilT 0.36 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA low > 80
Variovorax sp. SCN45 0.45 GFF3743 Twitching motility protein PilT 0.43 GFF7293 Ribosome hibernation promoting factor Hpf low > 127
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_0478 pilus retraction ATPase PilT 0.53 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_0478 pilus retraction ATPase PilT 0.53 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Acidovorax sp. GW101-3H11 0.45 Ac3H11_4473 Twitching motility protein PilT 0.43 Ac3H11_681 Ribosome hibernation protein YhbH low > 79
Lysobacter sp. OAE881 0.45 ABIE51_RS16055 type IV pilus twitching motility protein PilT 0.38 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA low > 62
Ralstonia solanacearum PSI07 0.44 RPSI07_RS11730 type IV pili twitching motility protein PilT 0.37 RPSI07_RS22135 ribosomal subunit interface protein low > 81
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS17350 twitching motility protein PilT 0.40 RR42_RS02080 ribosome hibernation promoting factor low > 128
Ralstonia solanacearum UW163 0.44 UW163_RS08055 type IV pili twitching motility protein PilT 0.36 UW163_RS02415 ribosomal subunit interface protein — —
Ralstonia solanacearum GMI1000 0.44 RS_RS13430 type IV pili twitching motility protein PilT 0.36 RS_RS02015 ribosomal subunit interface protein low > 80
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS05570 type IV pili twitching motility protein PilT 0.36 RALBFv3_RS11165 ribosomal subunit interface protein low > 76
Acinetobacter radioresistens SK82 0.44 MPMX26_02405 Twitching mobility protein 0.30 MPMX26_02591 Ribosome hibernation promoting factor — —
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_2343 Twitching motility protein PilT 0.53 Pf1N1B4_1081 Ribosome hibernation protein YhbH low > 87
Pseudomonas fluorescens FW300-N2E3 0.43 AO353_08155 twitching motility protein PilT 0.53 AO353_05185 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_13430 twitching motility protein PilT 0.53 AO356_07040 hypothetical protein low > 104
Pseudomonas sp. S08-1 0.43 OH686_10970 Twitching motility protein PilT 0.55 OH686_08550 Ribosome hibernation promoting factor Hpf low > 80
Pseudomonas fluorescens SBW25 0.43 PFLU_RS28365 type IV pilus twitching motility protein PilT 0.50 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS28365 type IV pilus twitching motility protein PilT 0.50 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_1012 Twitching motility protein PilT 0.52 PfGW456L13_5015 Ribosome hibernation protein YhbH low > 87
Pseudomonas stutzeri RCH2 0.43 Psest_0285 pilus retraction protein PilT 0.53 Psest_3314 ribosomal subunit interface protein low > 67
Pseudomonas sp. RS175 0.43 PFR28_04241 Twitching mobility protein 0.53 PFR28_00172 Ribosome hibernation promoting factor low > 88
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4602 Twitching motility protein PilT 0.53 Pf6N2E2_3268 Ribosome hibernation protein YhbH low > 103
Pseudomonas simiae WCS417 0.43 PS417_26720 twitching motility protein PilT 0.53 PS417_04340 ribosome hibernation promoting factor HPF low > 88
Marinobacter adhaerens HP15 0.43 HP15_289 twitching motility protein PilT 0.61 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA low > 73
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF2721 Twitching motility protein PilT 0.38 GFF2612 Ribosome hibernation protein YhbH low > 90
Pseudomonas putida KT2440 0.38 PP_5093 twitching motility protein 0.56 PP_0951 Ribosome hibernation promoting factor 0.13 40

Not shown: 6 genomes with orthologs for NOLOHH_11130 only; 9 genomes with orthologs for NOLOHH_09735 only