| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pantoea sp. MT58 | 1.0 | IAI47_03660 | | biosynthetic arginine decarboxylase | 1.0 | IAI47_17165 | | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | 0.41 | 12 |
| Erwinia tracheiphila SCR3 | 0.91 | LU632_RS05510 | speA | biosynthetic arginine decarboxylase | 0.82 | LU632_RS21260 | kdsC | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | low | > 74 |
| Enterobacter sp. TBS_079 | 0.88 | MPMX20_03799 | | Biosynthetic arginine decarboxylase | 0.76 | MPMX20_04104 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC | low | > 85 |
| Escherichia fergusonii Becca | 0.88 | EFB2_00962 | | Biosynthetic arginine decarboxylase | 0.81 | EFB2_00625 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC | low | > 86 |
| Enterobacter asburiae PDN3 | 0.88 | EX28DRAFT_2978 | | arginine decarboxylase (EC 4.1.1.19) | 0.77 | EX28DRAFT_3252 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family | low | > 76 |
| Escherichia coli ECRC98 | 0.88 | JDDGAC_22935 | speA | biosynthetic arginine decarboxylase | 0.80 | JDDGAC_21585 | kdsC | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | — | — |
| Escherichia coli ECOR27 | 0.88 | NOLOHH_11175 | speA | biosynthetic arginine decarboxylase | 0.80 | NOLOHH_09760 | kdsC | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | low | > 57 |
| Escherichia coli ECOR38 | 0.88 | HEPCGN_18610 | speA | biosynthetic arginine decarboxylase | 0.80 | HEPCGN_16835 | kdsC | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | low | > 85 |
| Escherichia coli ECRC99 | 0.88 | KEDOAH_08835 | speA | biosynthetic arginine decarboxylase | 0.80 | KEDOAH_10190 | kdsC | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | — | — |
| Escherichia coli ECRC102 | 0.88 | NIAGMN_17070 | speA | biosynthetic arginine decarboxylase | 0.80 | NIAGMN_15720 | kdsC | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | — | — |
| Escherichia coli ECRC101 | 0.88 | MCAODC_09825 | speA | biosynthetic arginine decarboxylase | 0.80 | MCAODC_08480 | kdsC | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | — | — |
| Escherichia coli ECRC62 | 0.88 | BNILDI_09755 | speA | biosynthetic arginine decarboxylase | 0.80 | BNILDI_01775 | kdsC | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.88 | OHPLBJKB_00778 | | Biosynthetic arginine decarboxylase | 0.81 | OHPLBJKB_00502 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC | low | > 73 |
| Escherichia coli Nissle 1917 | 0.88 | ECOLIN_RS16350 | | biosynthetic arginine decarboxylase | 0.81 | ECOLIN_RS18405 | | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | low | > 52 |
| Escherichia coli ECRC101 | 0.88 | OKFHMN_19305 | speA | biosynthetic arginine decarboxylase | 0.80 | OKFHMN_17960 | kdsC | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | — | — |
| Escherichia coli BL21 | 0.87 | ECD_02768 | | biosynthetic arginine decarboxylase, PLP-binding | 0.81 | ECD_03063 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase | low | > 60 |
| Escherichia coli BW25113 | 0.87 | b2938 | speA | arginine decarboxylase (NCBI) | 0.80 | b3198 | kdsC | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | low | > 76 |
| Klebsiella michiganensis M5al | 0.87 | BWI76_RS24030 | | arginine decarboxylase | 0.80 | BWI76_RS25245 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase | low | > 92 |
| Serratia liquefaciens MT49 | 0.85 | IAI46_21140 | | biosynthetic arginine decarboxylase | 0.84 | IAI46_22450 | | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.85 | GFF3040 | | Biosynthetic arginine decarboxylase (EC 4.1.1.19) | 0.78 | GFF2942 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) | low | > 78 |
| Dickeya dianthicola 67-19 | 0.84 | HGI48_RS18460 | | biosynthetic arginine decarboxylase | 0.81 | HGI48_RS01465 | | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | low | > 71 |
| Dickeya dianthicola ME23 | 0.84 | DZA65_RS19595 | | biosynthetic arginine decarboxylase | 0.81 | DZA65_RS01530 | | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | low | > 75 |
| Rahnella sp. WP5 | 0.84 | EX31_RS21355 | | biosynthetic arginine decarboxylase | 0.84 | EX31_RS12420 | | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | low | > 89 |
| Dickeya dadantii 3937 | 0.84 | DDA3937_RS18535 | | biosynthetic arginine decarboxylase | 0.81 | DDA3937_RS01550 | | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.84 | HER17_RS02665 | | biosynthetic arginine decarboxylase | 0.79 | HER17_RS20040 | | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | low | > 75 |
| Shewanella oneidensis MR-1 | 0.54 | SO1870 | speA | biosynthetic arginine decarboxylase (NCBI ptt file) | 0.54 | SO3957 | | conserved hypothetical protein (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.54 | Shewana3_1624 | | arginine decarboxylase (RefSeq) | 0.53 | Shewana3_0676 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.53 | Shew_1619 | | arginine decarboxylase (RefSeq) | 0.56 | Shew_3307 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.52 | Sama_1963 | | arginine decarboxylase (RefSeq) | 0.52 | Sama_3084 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.51 | CSW01_18235 | | arginine decarboxylase | 0.59 | CSW01_12795 | | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | — | — |
| Marinobacter adhaerens HP15 | 0.51 | HP15_272 | | biosynthetic arginine decarboxylase | 0.41 | HP15_2438 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family | — | — |
| Kangiella aquimarina DSM 16071 | 0.49 | B158DRAFT_1811 | | arginine decarboxylase (EC 4.1.1.19) | 0.52 | B158DRAFT_2084 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.4909.1 | | Biosynthetic arginine decarboxylase (EC 4.1.1.19) | 0.35 | Xcc-8004.1666.1 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) | — | — |
| Lysobacter sp. OAE881 | 0.42 | ABIE51_RS00125 | | arginine decarboxylase | 0.34 | ABIE51_RS15935 | | HAD hydrolase family protein | — | — |
| Rhodanobacter denitrificans MT42 | 0.42 | LRK55_RS08900 | | arginine decarboxylase | 0.41 | LRK55_RS12595 | | HAD hydrolase family protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.40 | OKGIIK_15625 | speA | biosynthetic arginine decarboxylase | 0.38 | OKGIIK_02285 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.40 | BT3394 | | putative arginine decarboxylase (NCBI ptt file) | 0.29 | BT1677 | | putative hydrolase (NCBI ptt file) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.40 | Psyr_4381 | | arginine decarboxylase | 0.43 | Psyr_4143 | | HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.40 | PFLU_RS03080 | | arginine decarboxylase | 0.44 | PFLU_RS04420 | | HAD family hydrolase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.40 | Psyr_4381 | | arginine decarboxylase | 0.43 | Psyr_4143 | | HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.40 | PFLU_RS03080 | | arginine decarboxylase | 0.44 | PFLU_RS04420 | | HAD family hydrolase | — | — |
| Pseudomonas stutzeri RCH2 | 0.40 | Psest_3366 | | Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) | 0.42 | Psest_3309 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family | — | — |
| Pseudomonas simiae WCS417 | 0.40 | PS417_03005 | | arginine decarboxylase | 0.44 | PS417_04365 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase | low | > 88 |
| Dyella japonica UNC79MFTsu3.2 | 0.40 | ABZR86_RS15580 | | biosynthetic arginine decarboxylase | 0.45 | ABZR86_RS19835 | | HAD family hydrolase | — | — |
| Bacteroides ovatus ATCC 8483 | 0.40 | BACOVA_01911 | | arginine 2-monooxygenase | 0.28 | BACOVA_04421 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family | — | — |
| Pseudomonas sp. S08-1 | 0.40 | OH686_07545 | | arginine decarboxylase | 0.40 | OH686_08520 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.39 | Pf6N2E2_3504 | | Biosynthetic arginine decarboxylase (EC 4.1.1.19) | 0.43 | Pf6N2E2_3263 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.39 | PfGW456L13_43 | | Biosynthetic arginine decarboxylase (EC 4.1.1.19) | 0.43 | PfGW456L13_5010 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) | — | — |
| Bacteroides stercoris CC31F | 0.39 | HMPREF1181_RS02535 | | biosynthetic arginine decarboxylase | 0.28 | HMPREF1181_RS01295 | | HAD-IIIA family hydrolase | low | > 56 |
| Pseudomonas putida KT2440 | 0.39 | PP_0567 | | Biosynthetic arginine decarboxylase | 0.42 | PP_0956 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.39 | LRK54_RS09140 | | arginine decarboxylase | 0.41 | LRK54_RS12895 | | HAD hydrolase family protein | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.39 | Pf1N1B4_1296 | | Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) | 0.43 | Pf1N1B4_1076 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) | — | — |
| Pseudomonas sp. RS175 | 0.39 | PFR28_05228 | | Biosynthetic arginine decarboxylase | 0.43 | PFR28_00177 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.39 | AO353_13720 | | arginine decarboxylase | 0.44 | AO353_05160 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.39 | AO356_08155 | | arginine decarboxylase | 0.43 | AO356_07015 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.39 | HMPREF1058_RS12110 | | biosynthetic arginine decarboxylase | 0.29 | HMPREF1058_RS16535 | | HAD-IIIA family hydrolase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.39 | HMPREF1078_RS15005 | | biosynthetic arginine decarboxylase | 0.30 | HMPREF1078_RS00030 | | HAD-IIIA family hydrolase | low | > 61 |
| Phocaeicola dorei CL03T12C01 | 0.39 | ABI39_RS04690 | | biosynthetic arginine decarboxylase | 0.29 | ABI39_RS12455 | | HAD-IIIA family hydrolase | — | — |
| Synechococcus elongatus PCC 7942 | 0.36 | Synpcc7942_1037 | speA | arginine decarboxylase | 0.37 | Synpcc7942_2288 | | Phosphatase kdsC | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.34 | DvMF_1536 | | arginine decarboxylase (RefSeq) | 0.29 | DvMF_0431 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family (RefSeq) | low | > 51 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.33 | DVU0417 | speA | arginine decarboxylase (TIGR) | 0.30 | DVU1625 | | phosphatase, YrbI family (TIGR) | — | — |
| Alteromonas macleodii MIT1002 | 0.32 | MIT1002_03905 | | Biosynthetic arginine decarboxylase | 0.45 | MIT1002_00831 | | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC | — | — |
Not shown: 0 genomes with orthologs for IAI47_03660 only; 20 genomes with orthologs for IAI47_17165 only