Conservation of cofitness between IAI47_11310 and IAI47_13435 in Pantoea sp. MT58

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pantoea sp. MT58 1.0 IAI47_11310 redox-regulated ATPase YchF 1.0 IAI47_13435 ATP-dependent RNA helicase RhlE 0.39 11
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF2784 GTP-binding and nucleic acid-binding protein YchF 0.75 GFF696 ATP-dependent RNA helicase RhlE low > 78
Dickeya dianthicola 67-19 0.94 HGI48_RS10975 redox-regulated ATPase YchF 0.73 HGI48_RS08785 ATP-dependent RNA helicase RhlE low > 71
Dickeya dianthicola ME23 0.94 DZA65_RS11435 redox-regulated ATPase YchF 0.73 DZA65_RS09075 ATP-dependent RNA helicase RhlE low > 75
Erwinia tracheiphila SCR3 0.94 LU632_RS13950 ychF redox-regulated ATPase YchF 0.78 LU632_RS09215 rhlE ATP-dependent RNA helicase RhlE low > 74
Dickeya dadantii 3937 0.94 DDA3937_RS11035 redox-regulated ATPase YchF 0.74 DDA3937_RS08645 ATP-dependent RNA helicase RhlE low > 74
Escherichia coli ECRC102 0.93 NIAGMN_27825 ychF redox-regulated ATPase YchF 0.75 NIAGMN_04335 rhlE ATP-dependent RNA helicase RhlE — —
Escherichia coli ECRC101 0.93 OKFHMN_28410 ychF redox-regulated ATPase YchF 0.75 OKFHMN_06290 rhlE ATP-dependent RNA helicase RhlE — —
Escherichia coli ECRC98 0.93 JDDGAC_06165 ychF redox-regulated ATPase YchF 0.75 JDDGAC_09925 rhlE ATP-dependent RNA helicase RhlE — —
Escherichia coli ECRC101 0.93 MCAODC_21850 ychF redox-regulated ATPase YchF 0.75 MCAODC_25505 rhlE ATP-dependent RNA helicase RhlE — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.93 OHPLBJKB_02484 Ribosome-binding ATPase YchF 0.75 OHPLBJKB_02916 ATP-dependent RNA helicase RhlE low > 73
Escherichia coli ECOR38 0.93 HEPCGN_24875 ychF redox-regulated ATPase YchF 0.75 HEPCGN_01750 rhlE ATP-dependent RNA helicase RhlE — —
Escherichia coli ECOR27 0.93 NOLOHH_20650 ychF redox-regulated ATPase YchF 0.75 NOLOHH_22645 rhlE ATP-dependent RNA helicase RhlE — —
Escherichia coli BW25113 0.93 b1203 ychF translation-associated GTPase (NCBI) 0.75 b0797 rhlE RNA helicase (NCBI) — —
Escherichia coli ECRC99 0.93 KEDOAH_25405 ychF redox-regulated ATPase YchF 0.75 KEDOAH_21620 rhlE ATP-dependent RNA helicase RhlE — —
Escherichia fergusonii Becca 0.93 EFB2_02724 Ribosome-binding ATPase YchF 0.75 EFB2_03308 ATP-dependent RNA helicase RhlE low > 86
Escherichia coli Nissle 1917 0.93 ECOLIN_RS07280 redox-regulated ATPase YchF 0.75 ECOLIN_RS04245 ATP-dependent RNA helicase RhlE — —
Escherichia coli ECRC62 0.93 BNILDI_18805 ychF redox-regulated ATPase YchF 0.75 BNILDI_20925 rhlE ATP-dependent RNA helicase RhlE — —
Escherichia coli BL21 0.93 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated 0.75 ECD_00764 ATP-dependent RNA helicase — —
Pectobacterium carotovorum WPP14 0.93 HER17_RS10445 redox-regulated ATPase YchF 0.74 HER17_RS13325 ATP-dependent RNA helicase RhlE low > 75
Serratia liquefaciens MT49 0.91 IAI46_10240 redox-regulated ATPase YchF 0.76 IAI46_06620 ATP-dependent RNA helicase RhlE — —
Rahnella sp. WP5 0.90 EX31_RS07380 redox-regulated ATPase YchF 0.76 EX31_RS23775 ATP-dependent RNA helicase RhlE low > 89
Enterobacter asburiae PDN3 0.89 EX28DRAFT_0821 GTP-binding protein YchF 0.74 EX28DRAFT_2194 Superfamily II DNA and RNA helicases — —
Enterobacter sp. TBS_079 0.89 MPMX20_02645 Ribosome-binding ATPase YchF 0.73 MPMX20_01425 ATP-dependent RNA helicase RhlE low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS17485 GTP-binding protein YchF 0.75 BWI76_RS08915 ATP-dependent RNA helicase RhlE — —
Shewanella amazonensis SB2B 0.81 Sama_2571 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.56 Sama_2687 DEAD-box ATP dependent DNA helicase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.81 MIT1002_01504 Ribosome-binding ATPase YchF 0.54 MIT1002_03342 ATP-dependent RNA helicase RhlE low > 70
Shewanella oneidensis MR-1 0.80 SO1185 conserved hypothetical protein TIGR00092 (NCBI ptt file) 0.57 SO3783 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.78 Shew_2919 translation-associated GTPase (RefSeq) 0.56 Shew_0604 DEAD/DEAH box helicase domain-containing protein (RefSeq) low > 60
Marinobacter adhaerens HP15 0.75 HP15_704 translation-associated GTPase 0.58 HP15_3607 DEAD/DEAH box helicase domain protein low > 73
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_10875 redox-regulated ATPase YchF 0.52 CSW01_15010 ATP-dependent RNA helicase RhlE low > 62
Cupriavidus basilensis FW507-4G11 0.73 RR42_RS18365 GTP-binding protein 0.63 RR42_RS02870 RNA helicase 0.33 43
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_2052 GTP-binding protein YchF 0.49 B158DRAFT_0320 Superfamily II DNA and RNA helicases low > 40
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS27600 redox-regulated ATPase YchF 0.62 QEN71_RS02265 DEAD/DEAH box helicase 0.80 90
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS22010 redox-regulated ATPase YchF 0.48 ABZR86_RS08975 DEAD/DEAH box helicase low > 74
Ralstonia solanacearum GMI1000 0.71 RS_RS14520 redox-regulated ATPase YchF 0.63 RS_RS02695 RNA helicase low > 80
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS17445 GTP-binding protein YchF 0.63 BPHYT_RS16445 RNA helicase low > 109
Paraburkholderia graminis OAS925 0.71 ABIE53_003650 GTP-binding protein YchF 0.63 ABIE53_003462 ATP-dependent RNA helicase RhlE low > 113
Lysobacter sp. OAE881 0.70 ABIE51_RS05745 redox-regulated ATPase YchF 0.46 ABIE51_RS06650 DEAD/DEAH box helicase low > 62
Castellaniella sp019104865 MT123 0.70 ABCV34_RS09215 redox-regulated ATPase YchF 0.55 ABCV34_RS12515 DEAD/DEAH box helicase — —
Dechlorosoma suillum PS 0.69 Dsui_1039 GTP-binding protein YchF 0.53 Dsui_3174 DNA/RNA helicase, superfamily II — —
Xanthomonas campestris pv. campestris strain 8004 0.69 Xcc-8004.4168.1 GTP-binding and nucleic acid-binding protein YchF 0.49 Xcc-8004.4527.1 ATP-dependent RNA helicase RhlE low > 74
Rhodanobacter sp. FW510-T8 0.68 OKGIIK_10565 Ribosome-binding ATPase YchF 0.46 OKGIIK_09690 srmB RNA helicase low > 52
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS03675 redox-regulated ATPase YchF 0.47 LRK54_RS02640 DEAD/DEAH box helicase low > 59
Rhodanobacter denitrificans MT42 0.68 LRK55_RS03425 redox-regulated ATPase YchF 0.47 LRK55_RS02395 DEAD/DEAH box helicase low > 63
Pontibacter actiniarum KMM 6156, DSM 19842 0.60 CA264_07495 GTP-binding protein YchF 0.42 CA264_02200 DEAD/DEAH box helicase low > 74
Sinorhizobium meliloti 1021 0.59 SMc02695 GTP-dependent nucleic acid-binding protein EngD 0.39 SM_b20880 ATP-dependent RNA helicase low > 103
Phaeobacter inhibens DSM 17395 0.59 PGA1_c04950 GTP-dependent nucleic acid-binding protein EngD 0.38 PGA1_c11390 putative ATP-dependent RNA helicase RhlE low > 62
Mucilaginibacter yixingensis YX-36 DSM 26809 0.58 ABZR88_RS14155 redox-regulated ATPase YchF 0.47 ABZR88_RS16030 DEAD/DEAH box helicase low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.58 Echvi_2525 GTP-binding protein YchF 0.39 Echvi_0511 Superfamily II DNA and RNA helicases low > 79
Bacteroides ovatus ATCC 8483 0.57 BACOVA_02821 GTP-binding protein YchF 0.44 BACOVA_01521 DEAD/DEAH box helicase — —
Bacteroides thetaiotaomicron VPI-5482 0.57 BT3116 GTP-binding protein (NCBI ptt file) 0.43 BT1885 putative ATP-dependent RNA helicase (NCBI ptt file) — —
Magnetospirillum magneticum AMB-1 0.57 AMB_RS21985 redox-regulated ATPase YchF 0.45 AMB_RS07215 ATP-dependent helicase — —
Parabacteroides merdae CL09T00C40 0.57 HMPREF1078_RS06345 redox-regulated ATPase YchF 0.44 HMPREF1078_RS01200 DEAD/DEAH box helicase low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.57 CA265_RS13275 redox-regulated ATPase YchF 0.47 CA265_RS16115 DEAD/DEAH box helicase low > 88
Phocaeicola dorei CL03T12C01 0.56 ABI39_RS05450 redox-regulated ATPase YchF 0.44 ABI39_RS02170 DEAD/DEAH box helicase low > 72
Phocaeicola vulgatus CL09T03C04 0.56 HMPREF1058_RS11490 redox-regulated ATPase YchF 0.44 HMPREF1058_RS02855 DEAD/DEAH box helicase low > 67
Rhodospirillum rubrum S1H 0.56 Rru_A3748 hypothetical protein (NCBI) 0.39 Rru_A1915 DEAD/DEAH box helicase (NCBI) low > 58
Caulobacter crescentus NA1000 Δfur 0.55 CCNA_00512 GTP-binding protein, probable translation factor 0.44 CCNA_00878 ATP-dependent RNA helicase low > 67
Caulobacter crescentus NA1000 0.55 CCNA_00512 GTP-binding protein, probable translation factor 0.44 CCNA_00878 ATP-dependent RNA helicase low > 66
Agrobacterium fabrum C58 0.55 Atu2233 GTP-binding protein 0.40 Atu2333 ATP-dependent RNA helicase — —
Bosea sp. OAE506 0.55 ABIE41_RS11295 redox-regulated ATPase YchF 0.41 ABIE41_RS22380 DEAD/DEAH box helicase — —
Bacteroides stercoris CC31F 0.52 HMPREF1181_RS02000 redox-regulated ATPase YchF 0.43 HMPREF1181_RS03715 DEAD/DEAH box helicase low > 56

Not shown: 38 genomes with orthologs for IAI47_11310 only; 0 genomes with orthologs for IAI47_13435 only