Conservation of cofitness between HSERO_RS13935 and HSERO_RS13930 in Herbaspirillum seropedicae SmR1

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS13935 DNAase 1.0 HSERO_RS13930 competence protein ComEC 0.78 1
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS05855 TatD family hydrolase 0.34 QEN71_RS05860 DNA internalization-related competence protein ComEC/Rec2 low > 153
Paraburkholderia bryophila 376MFSha3.1 0.55 H281DRAFT_00492 TatD DNase family protein 0.28 H281DRAFT_00493 competence protein ComEC low > 103
Burkholderia phytofirmans PsJN 0.55 BPHYT_RS12705 DNAase 0.33 BPHYT_RS12700 competence protein ComEC low > 109
Paraburkholderia graminis OAS925 0.54 ABIE53_002767 TatD DNase family protein 0.28 ABIE53_002766 competence protein ComEC 0.22 26
Castellaniella sp019104865 MT123 0.52 ABCV34_RS04985 TatD family hydrolase 0.20 ABCV34_RS04980 DNA internalization-related competence protein ComEC/Rec2 low > 48
Cupriavidus basilensis FW507-4G11 0.52 RR42_RS06110 DNAase 0.32 RR42_RS06115 competence protein ComEC — —
Variovorax sp. OAS795 0.48 ABID97_RS22725 TatD family hydrolase 0.31 ABID97_RS19990 DNA internalization-related competence protein ComEC/Rec2 low > 91
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS10420 TatD family hydrolase 0.36 ABZR87_RS10425 DNA internalization-related competence protein ComEC/Rec2 low > 80
Ralstonia solanacearum GMI1000 0.47 RS_RS05570 TatD family deoxyribonuclease 0.34 RS_RS05575 DNA internalization-related competence protein ComEC/Rec2 low > 80
Ralstonia solanacearum PSI07 0.46 RPSI07_RS18600 TatD family deoxyribonuclease 0.33 RPSI07_RS18595 DNA internalization-related competence protein ComEC/Rec2 low > 81
Acidovorax sp. GW101-3H11 0.46 Ac3H11_1737 Putative deoxyribonuclease YjjV 0.27 Ac3H11_266 DNA internalization-related competence protein ComEC/Rec2 low > 79
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS14760 TatD family deoxyribonuclease 0.34 RALBFv3_RS14765 DNA internalization-related competence protein ComEC/Rec2 low > 76
Ralstonia solanacearum UW163 0.45 UW163_RS12230 TatD family deoxyribonuclease 0.34 UW163_RS12235 DNA internalization-related competence protein ComEC/Rec2 — —
Variovorax sp. SCN45 0.45 GFF6080 Putative deoxyribonuclease YjjV 0.31 GFF2685 DNA internalization-related competence protein ComEC/Rec2 low > 127
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_5078 Putative deoxyribonuclease YjjV 0.20 PfGW456L13_2083 DNA internalization-related competence protein ComEC/Rec2 low > 87
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_3341 Putative deoxyribonuclease YjjV 0.20 Pf6N2E2_5930 Predicted hydrolase of the metallo-beta-lactamase superfamily, clustered with KDO2-Lipid A biosynthesis genes low > 103
Pseudomonas sp. S08-1 0.36 OH686_16550 Putative deoxyribonuclease YjjV 0.19 OH686_22045 DNA internalization-related competence protein ComEC/Rec2 low > 80
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_07345 hydrolase TatD 0.21 AO356_20060 competence protein ComEC low > 104
Pseudomonas fluorescens SBW25 0.35 PFLU_RS04000 TatD family hydrolase 0.18 PFLU_RS18400 DNA internalization-related competence protein ComEC/Rec2 low > 109
Pseudomonas simiae WCS417 0.35 PS417_03955 hydrolase TatD 0.20 PS417_16350 competence protein ComEC low > 88
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS04000 TatD family hydrolase 0.18 PFLU_RS18400 DNA internalization-related competence protein ComEC/Rec2 low > 109
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_1148 Putative deoxyribonuclease YjjV 0.20 Pf1N1B4_473 DNA internalization-related competence protein ComEC/Rec2 low > 87
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_05495 hydrolase TatD 0.19 AO353_01465 competence protein ComEC low > 101
Pseudomonas stutzeri RCH2 0.34 Psest_0728 hydrolase, TatD family 0.20 Psest_1671 DNA internalization-related competence protein ComEC/Rec2 low > 67
Escherichia coli Nissle 1917 0.34 ECOLIN_RS25130 metal-dependent hydrolase 0.13 ECOLIN_RS04835 ComEC family protein low > 55
Kangiella aquimarina DSM 16071 0.34 B158DRAFT_2240 Mg-dependent DNase 0.15 B158DRAFT_1591 DNA internalization-related competence protein ComEC/Rec2 low > 40
Pseudomonas sp. RS175 0.34 PFR28_00103 putative metal-dependent hydrolase YjjV 0.20 PFR28_03031 ComE operon protein 3 low > 88
Escherichia coli BW25113 0.34 b4378 yjjV predicted DNase (NCBI) 0.13 b0913 ycaI orf, hypothetical protein (VIMSS) low > 76
Escherichia coli BL21 0.34 ECD_04254 putative DNase 0.13 ECD_00917 ComEC family inner membrane protein low > 61
Escherichia fergusonii Becca 0.34 EFB2_04068 putative metal-dependent hydrolase YjjV 0.13 EFB2_03151 hypothetical protein low > 86
Dickeya dianthicola 67-19 0.34 HGI48_RS02415 TatD family hydrolase 0.14 HGI48_RS09845 ComEC family protein low > 71
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_0819 TatD-related deoxyribonuclease 0.20 Psyr_1632 ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2 low > 86
Pectobacterium carotovorum WPP14 0.34 HER17_RS19045 TatD family hydrolase 0.14 HER17_RS12105 ComEC family protein low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_0819 TatD-related deoxyribonuclease 0.20 Psyr_1632 ComEC/Rec2-related protein:DNA internalization-related competence protein ComEC/Rec2 low > 86
Escherichia coli ECRC98 0.33 JDDGAC_14855 yjjV metal-dependent hydrolase 0.13 JDDGAC_09070 ycaI ComEC family protein low > 86
Escherichia coli ECRC101 0.33 MCAODC_01775 yjjV metal-dependent hydrolase 0.13 MCAODC_24850 ycaI ComEC family protein low > 87
Escherichia coli ECRC99 0.33 KEDOAH_16885 yjjV metal-dependent hydrolase 0.13 KEDOAH_22275 ycaI ComEC family protein — —
Escherichia coli ECRC100 0.33 OKFHMN_11260 yjjV metal-dependent hydrolase 0.13 OKFHMN_05460 ycaI ComEC family protein low > 80
Escherichia coli ECRC102 0.33 NIAGMN_09110 yjjV metal-dependent hydrolase 0.13 NIAGMN_03180 ycaI ComEC family protein — —
Enterobacter sp. TBS_079 0.33 MPMX20_00677 putative metal-dependent hydrolase YjjV 0.10 MPMX20_01571 hypothetical protein low > 85
Lysobacter sp. OAE881 0.33 ABIE51_RS12580 TatD family hydrolase 0.19 ABIE51_RS12490 DNA internalization-related competence protein ComEC/Rec2 low > 62
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS06375 TatD family hydrolase 0.20 ABZR86_RS06305 DNA internalization-related competence protein ComEC/Rec2 low > 74
Dickeya dianthicola ME23 0.32 DZA65_RS02520 metal-dependent hydrolase 0.13 DZA65_RS10175 ComEC family protein low > 75
Pseudomonas putida KT2440 0.32 PP_0791 putative hydrolase 0.19 PP_1897 DNA internalization-related competence protein ComEC/Rec2 low > 96
Erwinia tracheiphila SCR3 0.31 LU632_RS02510 TatD family hydrolase 0.13 LU632_RS09820 ComEC family protein low > 74
Pantoea sp. MT58 0.31 IAI47_03395 metal-dependent hydrolase 0.13 IAI47_12840 DNA internalization-related competence protein ComEC/Rec2 low > 76
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_11925 TatD family deoxyribonuclease 0.13 CSW01_09415 DNA internalization-related competence protein ComEC/Rec2 0.60 28
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS16135 TatD family hydrolase 0.19 LRK54_RS16205 DNA internalization-related competence protein ComEC/Rec2 low > 59
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_08515 DNAase 0.19 OKGIIK_08450 DNA internalization-related competence protein ComEC/Rec2 low > 52
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.3493.1 Putative deoxyribonuclease YjjV 0.19 Xcc-8004.2469.1 DNA internalization-related competence protein ComEC/Rec2 low > 74
Marinobacter adhaerens HP15 0.28 HP15_542 TatD-related deoxyribonuclease 0.16 HP15_2067 DNA internalization-related competence protein ComEC/Rec2 low > 73
Shewanella sp. ANA-3 0.26 Shewana3_1038 TatD-related deoxyribonuclease (RefSeq) 0.15 Shewana3_2585 DNA internalization-related competence protein ComEC/Rec2 (RefSeq) low > 73
Rahnella sp. WP5 0.26 EX31_RS04070 deoxyribonuclease YjjV 0.15 EX31_RS18230 DNA internalization-related competence protein ComEC/Rec2 low > 89
Shewanella oneidensis MR-1 0.26 SO1213 hydrolase, TatD family (NCBI ptt file) 0.14 SO2803 DNA internalization-related competence protein ComEC/Rec2 (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.23 MIT1002_02710 putative deoxyribonuclease YjjV 0.13 MIT1002_01926 ComEC family competence protein low > 70

Not shown: 13 genomes with orthologs for HSERO_RS13935 only; 2 genomes with orthologs for HSERO_RS13930 only