Conservation of cofitness between HSERO_RS06265 and HSERO_RS08335 in Herbaspirillum seropedicae SmR1

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS06265 3-hydroxybutyrate dehydrogenase 1.0 HSERO_RS08335 4-hydroxyphenylpyruvate dioxygenase 0.23 14
Variovorax sp. SCN45 0.73 GFF1032 Oxidoreductase, short-chain dehydrogenase/reductase family 0.63 GFF1962 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) low > 127
Variovorax sp. OAS795 0.73 ABID97_RS14375 3-hydroxybutyrate dehydrogenase 0.64 ABID97_RS25360 4-hydroxyphenylpyruvate dioxygenase low > 91
Azospirillum sp. SherDot2 0.68 MPMX19_02212 D-beta-hydroxybutyrate dehydrogenase 0.68 MPMX19_05634 4-hydroxyphenylpyruvate dioxygenase low > 112
Paraburkholderia graminis OAS925 0.67 ABIE53_004793 3-hydroxybutyrate dehydrogenase 0.65 ABIE53_000012 4-hydroxyphenylpyruvate dioxygenase low > 113
Lysobacter sp. OAE881 0.66 ABIE51_RS15715 3-hydroxybutyrate dehydrogenase 0.53 ABIE51_RS04075 4-hydroxyphenylpyruvate dioxygenase low > 62
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS09070 3-hydroxybutyrate dehydrogenase 0.65 QEN71_RS28440 4-hydroxyphenylpyruvate dioxygenase low > 153
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS15585 3-hydroxybutyrate dehydrogenase 0.55 ABZR86_RS18470 4-hydroxyphenylpyruvate dioxygenase low > 74
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_15630 3-hydroxybutyrate dehydrogenase 0.53 OKGIIK_00780 hppD 4-hydroxyphenylpyruvate dioxygenase low > 52
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS19645 3-hydroxybutyrate dehydrogenase 0.64 ABZR87_RS03395 4-hydroxyphenylpyruvate dioxygenase low > 80
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS01235 3-hydroxybutyrate dehydrogenase 0.57 RR42_RS33500 4-hydroxyphenylpyruvate dioxygenase low > 128
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS11930 3-hydroxybutyrate dehydrogenase 0.66 BPHYT_RS18295 4-hydroxyphenylpyruvate dioxygenase low > 109
Rhodanobacter denitrificans FW104-10B01 0.63 LRK54_RS09145 3-hydroxybutyrate dehydrogenase 0.51 LRK54_RS05850 4-hydroxyphenylpyruvate dioxygenase low > 59
Ralstonia solanacearum GMI1000 0.63 RS_RS22245 3-hydroxybutyrate dehydrogenase 0.63 RS_RS15585 4-hydroxyphenylpyruvate dioxygenase low > 80
Rhodanobacter denitrificans MT42 0.63 LRK55_RS08675 3-hydroxybutyrate dehydrogenase 0.51 LRK55_RS05605 4-hydroxyphenylpyruvate dioxygenase low > 63
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_04976 3-hydroxybutyrate dehydrogenase 0.65 H281DRAFT_05849 4-hydroxyphenylpyruvate dioxygenase low > 103
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS18705 3-hydroxybutyrate dehydrogenase 0.64 RALBFv3_RS07685 4-hydroxyphenylpyruvate dioxygenase low > 76
Ralstonia solanacearum UW163 0.63 UW163_RS20425 3-hydroxybutyrate dehydrogenase 0.64 UW163_RS05940 4-hydroxyphenylpyruvate dioxygenase — —
Ralstonia solanacearum PSI07 0.62 RPSI07_RS04890 3-hydroxybutyrate dehydrogenase 0.64 RPSI07_RS09575 4-hydroxyphenylpyruvate dioxygenase low > 81
Alteromonas macleodii MIT1002 0.37 MIT1002_01448 D-beta-hydroxybutyrate dehydrogenase 0.54 MIT1002_01553 4-hydroxyphenylpyruvate dioxygenase low > 70
Sinorhizobium meliloti 1021 0.36 SM_b21010 D-beta-hydroxybutyrate dehydrogenase 0.52 SMc03211 4-hydroxyphenylpyruvate dioxygenase low > 103
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.2418.1 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) 0.52 Xcc-8004.578.1 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) low > 74
Phaeobacter inhibens DSM 17395 0.35 PGA1_c15020 D-beta-hydroxybutyrate dehydrogenase BdhA 0.47 PGA1_c07610 4-hydroxyphenylpyruvate dioxygenase Hpd low > 62
Rhodopseudomonas palustris CGA009 0.33 TX73_021805 3-hydroxybutyrate dehydrogenase 0.56 TX73_000025 4-hydroxyphenylpyruvate dioxygenase low > 86
Caulobacter crescentus NA1000 0.33 CCNA_03495 D-beta-hydroxybutyrate dehydrogenase 0.57 CCNA_02616 4-hydroxyphenylpyruvate dioxygenase low > 66
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_03495 D-beta-hydroxybutyrate dehydrogenase 0.57 CCNA_02616 4-hydroxyphenylpyruvate dioxygenase low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS06090 3-hydroxybutyrate dehydrogenase 0.51 A4249_RS11200 4-hydroxyphenylpyruvate dioxygenase low > 48
Castellaniella sp019104865 MT123 0.32 ABCV34_RS01165 3-hydroxybutyrate dehydrogenase 0.59 ABCV34_RS09775 4-hydroxyphenylpyruvate dioxygenase low > 48
Pseudomonas stutzeri RCH2 0.31 Psest_3522 3-hydroxybutyrate dehydrogenase 0.60 Psest_3514 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) low > 67
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF4927 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) 0.61 GFF1741 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) 0.38 67
Acidovorax sp. GW101-3H11 0.30 Ac3H11_360 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) 0.54 Ac3H11_1849 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) low > 79
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_2771 3-hydroxybutyrate dehydrogenase 0.51 Ga0059261_2984 4-hydroxyphenylpyruvate dioxygenase low > 68
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_21770 3-hydroxybutyrate dehydrogenase 0.58 AO353_26925 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) low > 101
Pseudomonas sp. S08-1 0.29 OH686_00815 3-hydroxybutyrate dehydrogenase 0.60 OH686_21080 4-hydroxyphenylpyruvate dioxygenase low > 80
Pseudomonas fluorescens FW300-N1B4 0.29 Pf1N1B4_5633 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) 0.58 Pf1N1B4_5003 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) — —
Pseudomonas simiae WCS417 0.29 PS417_12150 3-hydroxybutyrate dehydrogenase 0.58 PS417_14005 4-hydroxyphenylpyruvate dioxygenase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_05955 SDR family oxidoreductase 0.25 CA264_09345 4-hydroxyphenylpyruvate dioxygenase low > 74
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_2873 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) 0.57 PfGW456L13_2935 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) 0.65 4
Pseudomonas sp. RS175 0.28 PFR28_01395 D-beta-hydroxybutyrate dehydrogenase 0.57 PFR28_02475 4-hydroxyphenylpyruvate dioxygenase low > 88
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_00420 3-hydroxybutyrate dehydrogenase 0.58 AO356_22845 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) low > 104
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_2041 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) 0.58 Pf6N2E2_456 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) low > 103
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS12840 3-hydroxybutyrate dehydrogenase 0.58 PFLU_RS14610 4-hydroxyphenylpyruvate dioxygenase low > 109
Pseudomonas fluorescens SBW25 0.28 PFLU_RS12840 3-hydroxybutyrate dehydrogenase 0.58 PFLU_RS14610 4-hydroxyphenylpyruvate dioxygenase low > 109
Pseudomonas putida KT2440 0.28 PP_3073 3-hydroxybutyrate dehydrogenase 0.57 PP_3433 4-hydroxyphenylpyruvate dioxygenase low > 96
Shewanella amazonensis SB2B 0.27 Sama_0517 D-beta-hydroxybutyrate dehydrogenase (RefSeq) 0.39 Sama_1568 4-hydroxyphenylpyruvate dioxygenase (RefSeq) low > 62
Shewanella sp. ANA-3 0.27 Shewana3_3466 short-chain dehydrogenase/reductase SDR (RefSeq) 0.39 Shewana3_2482 4-hydroxyphenylpyruvate dioxygenase (RefSeq) low > 73
Dickeya dadantii 3937 0.27 DDA3937_RS16280 (S)-acetoin forming diacetyl reductase 0.50 DDA3937_RS21335 4-hydroxyphenylpyruvate dioxygenase low > 74
Dickeya dianthicola ME23 0.26 DZA65_RS17475 (S)-acetoin forming diacetyl reductase 0.52 DZA65_RS22650 4-hydroxyphenylpyruvate dioxygenase low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_4813 Short-chain dehydrogenase/reductase SDR 0.57 Psyr_3330 4-hydroxyphenylpyruvate dioxygenase low > 86
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_4813 Short-chain dehydrogenase/reductase SDR 0.57 Psyr_3330 4-hydroxyphenylpyruvate dioxygenase low > 86

Not shown: 16 genomes with orthologs for HSERO_RS06265 only; 9 genomes with orthologs for HSERO_RS08335 only