| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS23825 | | hypothetical protein | 1.0 | HSERO_RS07160 | | phospho-2-dehydro-3-deoxyheptonate aldolase | 0.46 | 15 |
| Burkholderia phytofirmans PsJN | 0.29 | BPHYT_RS19575 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.83 | BPHYT_RS03535 | | phospho-2-dehydro-3-deoxyheptonate aldolase | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.28 | ABIE53_000291 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein | 0.83 | ABIE53_000850 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.27 | H281DRAFT_02360 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein | 0.82 | H281DRAFT_04687 | | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase | 0.27 | 38 |
| Ralstonia sp. UNC404CL21Col | 0.27 | ABZR87_RS12805 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.82 | ABZR87_RS01110 | | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.26 | QEN71_RS29485 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.82 | QEN71_RS26560 | | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 153 |
| Ralstonia solanacearum GMI1000 | 0.25 | RS_RS08635 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.82 | RS_RS13320 | | 3-deoxy-7-phosphoheptulonate synthase | 0.38 | 24 |
| Ralstonia solanacearum PSI07 | 0.25 | RPSI07_RS16115 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.82 | RPSI07_RS11845 | | 3-deoxy-7-phosphoheptulonate synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.24 | RALBFv3_RS01360 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.81 | RALBFv3_RS05460 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.24 | UW163_RS14670 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.81 | UW163_RS08165 | | 3-deoxy-7-phosphoheptulonate synthase | — | — |
| Dechlorosoma suillum PS | 0.21 | Dsui_2868 | | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein | 0.74 | Dsui_3444 | | phospho-2-dehydro-3-deoxyheptonate aldolase | low | > 51 |
| Cupriavidus basilensis FW507-4G11 | 0.21 | RR42_RS09010 | | FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.79 | RR42_RS05860 | | phospho-2-dehydro-3-deoxyheptonate aldolase | low | > 128 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.20 | GFF1945 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.66 | GFF8 | | 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) | — | — |
| Escherichia coli ECOR27 | 0.20 | NOLOHH_14275 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.67 | NOLOHH_23170 | aroG | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 75 |
| Escherichia coli Nissle 1917 | 0.20 | ECOLIN_RS13465 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.66 | ECOLIN_RS04015 | | 3-deoxy-7-phosphoheptulonate synthase AroG | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.20 | Pf1N1B4_373 | | 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC | 0.47 | Pf1N1B4_289 | | 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) | low | > 87 |
| Escherichia coli ECOR38 | 0.20 | HEPCGN_21845 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.66 | HEPCGN_01535 | aroG | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 87 |
| Escherichia coli BW25113 | 0.20 | b2324 | b2324 | putative peptidase (VIMSS) | 0.67 | b0754 | aroG | 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.20 | OHPLBJKB_01381 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.67 | OHPLBJKB_02959 | | Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive | low | > 73 |
| Escherichia fergusonii Becca | 0.20 | EFB2_01534 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.66 | EFB2_03352 | | Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive | low | > 86 |
| Escherichia coli ECRC98 | 0.19 | JDDGAC_26600 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.67 | JDDGAC_10395 | aroG | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 86 |
| Escherichia coli ECRC101 | 0.19 | MCAODC_13680 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.67 | MCAODC_25960 | aroG | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 87 |
| Escherichia coli ECRC99 | 0.19 | KEDOAH_05555 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.67 | KEDOAH_21225 | aroG | 3-deoxy-7-phosphoheptulonate synthase AroG | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.19 | AO353_02165 | | FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.48 | AO353_19030 | | phospho-2-dehydro-3-deoxyheptonate aldolase | low | > 101 |
| Escherichia coli ECRC62 | 0.19 | BNILDI_13195 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.67 | BNILDI_21165 | aroG | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 75 |
| Escherichia coli ECRC100 | 0.19 | OKFHMN_22640 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.67 | OKFHMN_06740 | aroG | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 80 |
| Escherichia coli ECRC102 | 0.19 | NIAGMN_20415 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.67 | NIAGMN_04790 | aroG | 3-deoxy-7-phosphoheptulonate synthase AroG | — | — |
| Escherichia coli BL21 | 0.19 | ECD_02249 | | fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme | 0.67 | ECD_00707 | | 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible | low | > 61 |
| Pseudomonas stutzeri RCH2 | 0.19 | Psest_1634 | | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain | 0.50 | Psest_2331 | | phospho-2-dehydro-3-deoxyheptonate aldolase | low | > 67 |
| Klebsiella michiganensis M5al | 0.19 | BWI76_RS20410 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.66 | BWI76_RS08600 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 92 |
| Pseudomonas fluorescens GW456-L13 | 0.19 | PfGW456L13_2155 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.48 | PfGW456L13_2224 | | 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) | low | > 87 |
| Pseudomonas sp. S08-1 | 0.19 | OH686_20990 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.50 | OH686_01760 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.19 | AO356_03570 | | FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.48 | AO356_03200 | | phospho-2-dehydro-3-deoxyheptonate aldolase | low | > 104 |
| Enterobacter asburiae PDN3 | 0.18 | EX28DRAFT_0280 | | tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain | 0.65 | EX28DRAFT_2241 | | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) | low | > 76 |
| Pseudomonas sp. RS175 | 0.18 | PFR28_00884 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.48 | PFR28_00962 | | Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive | low | > 88 |
| Vibrio cholerae E7946 ATCC 55056 | 0.18 | CSW01_10535 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.65 | CSW01_19270 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 62 |
| Pseudomonas fluorescens FW300-N2E2 | 0.18 | Pf6N2E2_2541 | | 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC | 0.48 | Pf6N2E2_2470 | | 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) | low | > 103 |
| Serratia liquefaciens MT49 | 0.18 | IAI46_18000 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.66 | IAI46_06405 | | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.18 | HER17_RS06960 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.66 | HER17_RS14805 | | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 75 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.17 | Psyr_3742 | | FAD dependent oxidoreductase:Protein of unknown function DUF752 | 0.49 | Psyr_2073 | | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.17 | Psyr_3742 | | FAD dependent oxidoreductase:Protein of unknown function DUF752 | 0.49 | Psyr_2073 | | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase | low | > 86 |
| Pseudomonas simiae WCS417 | 0.17 | PS417_19225 | | FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.48 | PS417_08430 | | phospho-2-dehydro-3-deoxyheptonate aldolase | low | > 88 |
| Enterobacter sp. TBS_079 | 0.17 | MPMX20_03259 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.64 | MPMX20_01381 | | Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive | low | > 85 |
| Pseudomonas putida KT2440 | 0.17 | PP_1751 | | methyltransferase/FAD-dependent oxidoreductase | 0.50 | PP_2324 | | tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase | low | > 96 |
| Marinobacter adhaerens HP15 | 0.17 | HP15_1540 | | protein YfcK | 0.47 | HP15_1814 | | phospho-2-dehydro-3-heoxyheptonate aldolase | low | > 73 |
| Pantoea sp. MT58 | 0.16 | IAI47_06175 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.66 | IAI47_13605 | | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 76 |
| Dickeya dadantii 3937 | 0.16 | DDA3937_RS14515 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.66 | DDA3937_RS06560 | | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 74 |
| Dickeya dianthicola ME23 | 0.16 | DZA65_RS15420 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.66 | DZA65_RS06960 | | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 75 |
| Dickeya dianthicola 67-19 | 0.16 | HGI48_RS14485 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.66 | HGI48_RS06605 | | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 71 |
| Pseudomonas fluorescens SBW25 | 0.16 | PFLU_RS21190 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.48 | PFLU_RS08380 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.16 | PFLU_RS21190 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.48 | PFLU_RS08380 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 109 |
| Rahnella sp. WP5 | 0.15 | EX31_RS19660 | | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.66 | EX31_RS23545 | | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 89 |
| Shewanella sp. ANA-3 | 0.15 | Shewana3_1474 | | FAD dependent oxidoreductase (RefSeq) | 0.65 | Shewana3_3528 | | phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) | low | > 73 |
| Variovorax sp. SCN45 | 0.14 | GFF1245 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.65 | GFF4447 | | 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphat e synthase I alpha (EC 2.5.1.54) | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.14 | Ac3H11_579 | | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase | 0.64 | Ac3H11_4034 | | 2-keto-3-deoxy-D-arabino-heptulosonate-7- phosphate synthase I alpha (EC 2.5.1.54) | low | > 79 |
| Erwinia tracheiphila SCR3 | 0.14 | LU632_RS07800 | mnmC | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.64 | LU632_RS15925 | aroG | 3-deoxy-7-phosphoheptulonate synthase AroG | low | > 74 |
| Shewanella oneidensis MR-1 | 0.13 | SO3073 | | conserved hypothetical protein (NCBI ptt file) | 0.65 | SO0756 | aroG | phospho-2-dehydro-3-deoxyheptonate aldolase, phe-sensitive (NCBI ptt file) | low | > 76 |
| Castellaniella sp019104865 MT123 | 0.13 | ABCV34_RS09580 | | FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.70 | ABCV34_RS06825 | | 3-deoxy-7-phosphoheptulonate synthase AroG | — | — |
| Alteromonas macleodii MIT1002 | 0.12 | MIT1002_02542 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.47 | MIT1002_01314 | | Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive | low | > 70 |
| Shewanella loihica PV-4 | 0.12 | Shew_2411 | | FAD dependent oxidoreductase (RefSeq) | 0.65 | Shew_0851 | | phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) | low | > 60 |
| Variovorax sp. OAS795 | 0.12 | ABID97_RS15455 | | FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | 0.65 | ABID97_RS06345 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 91 |
| Acinetobacter radioresistens SK82 | 0.09 | MPMX26_02642 | | tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC | 0.50 | MPMX26_01673 | | Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive | low | > 36 |
| Caulobacter crescentus NA1000 Δfur | 0.08 | CCNA_00785 | | tRNA methyltransferase/FAD-dependent oxidoreductase MnmC | 0.65 | CCNA_01463 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.08 | CCNA_00785 | | tRNA methyltransferase/FAD-dependent oxidoreductase MnmC | 0.65 | CCNA_01463 | | 3-deoxy-7-phosphoheptulonate synthase | low | > 66 |
Not shown: 1 genomes with orthologs for HSERO_RS23825 only; 11 genomes with orthologs for HSERO_RS07160 only