Conservation of cofitness between HSERO_RS23825 and HSERO_RS02650 in Herbaspirillum seropedicae SmR1

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS23825 hypothetical protein 1.0 HSERO_RS02650 dihydroxy-acid dehydratase 0.47 11
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS19575 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.77 BPHYT_RS10100 dihydroxy-acid dehydratase low > 109
Paraburkholderia graminis OAS925 0.28 ABIE53_000291 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein 0.72 ABIE53_006513 dihydroxy-acid dehydratase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_02360 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein 0.73 H281DRAFT_05312 dihydroxyacid dehydratase low > 103
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS12805 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.74 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS29485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.73 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Ralstonia solanacearum GMI1000 0.25 RS_RS08635 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.29 RS_RS12105 dihydroxy-acid dehydratase — —
Ralstonia solanacearum PSI07 0.25 RPSI07_RS16115 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.29 RPSI07_RS12840 dihydroxy-acid dehydratase — —
Ralstonia solanacearum IBSBF1503 0.24 RALBFv3_RS01360 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase — —
Ralstonia solanacearum UW163 0.24 UW163_RS14670 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.29 UW163_RS09135 dihydroxy-acid dehydratase — —
Cupriavidus basilensis FW507-4G11 0.21 RR42_RS09010 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.29 RR42_RS16210 dihydroxy-acid dehydratase — —
Dechlorosoma suillum PS 0.21 Dsui_2868 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein 0.74 Dsui_1122 dihydroxy-acid dehydratase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.20 GFF1945 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.73 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 78
Escherichia coli ECOR27 0.20 NOLOHH_14275 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.74 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 75
Escherichia coli Nissle 1917 0.20 ECOLIN_RS13465 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.74 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 55
Escherichia coli ECOR38 0.20 HEPCGN_21845 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.73 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.20 OHPLBJKB_01381 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.74 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli BW25113 0.20 b2324 b2324 putative peptidase (VIMSS) 0.73 b3771 ilvD dihydroxy-acid dehydratase (NCBI) low > 76
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_373 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC 0.71 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 87
Escherichia fergusonii Becca 0.20 EFB2_01534 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.74 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Escherichia coli ECRC98 0.19 JDDGAC_26600 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.73 JDDGAC_18260 ilvD dihydroxy-acid dehydratase low > 86
Escherichia coli ECRC100 0.19 OKFHMN_22640 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.73 OKFHMN_14640 ilvD dihydroxy-acid dehydratase low > 80
Escherichia coli ECRC99 0.19 KEDOAH_05555 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.73 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 0.19 MCAODC_13680 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.73 MCAODC_05145 ilvD dihydroxy-acid dehydratase low > 87
Escherichia coli ECRC62 0.19 BNILDI_13195 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.74 BNILDI_04750 ilvD dihydroxy-acid dehydratase low > 75
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_02165 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.72 AO353_08345 dihydroxy-acid dehydratase low > 101
Escherichia coli ECRC102 0.19 NIAGMN_20415 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.73 NIAGMN_12395 ilvD dihydroxy-acid dehydratase — —
Escherichia coli BL21 0.19 ECD_02249 fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme 0.74 ECD_03649 dihydroxyacid dehydratase low > 61
Pseudomonas stutzeri RCH2 0.19 Psest_1634 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 0.71 Psest_0234 dihydroxy-acid dehydratase — —
Klebsiella michiganensis M5al 0.19 BWI76_RS20410 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.73 BWI76_RS00975 dihydroxy-acid dehydratase low > 92
Pseudomonas fluorescens GW456-L13 0.19 PfGW456L13_2155 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.71 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.30 83
Pseudomonas sp. S08-1 0.19 OH686_20990 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.71 OH686_14100 dihydroxy-acid dehydratase low > 80
Pseudomonas fluorescens FW300-N2C3 0.19 AO356_03570 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.72 AO356_13250 dihydroxy-acid dehydratase low > 104
Enterobacter asburiae PDN3 0.18 EX28DRAFT_0280 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 0.73 EX28DRAFT_4443 dihydroxy-acid dehydratase low > 76
Vibrio cholerae E7946 ATCC 55056 0.18 CSW01_10535 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.72 CSW01_00140 dihydroxy-acid dehydratase low > 62
Pseudomonas sp. RS175 0.18 PFR28_00884 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.72 PFR28_04278 Dihydroxy-acid dehydratase low > 88
Pseudomonas fluorescens FW300-N2E2 0.18 Pf6N2E2_2541 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC 0.72 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 103
Serratia liquefaciens MT49 0.18 IAI46_18000 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.71 IAI46_24345 dihydroxy-acid dehydratase low > 86
Pectobacterium carotovorum WPP14 0.18 HER17_RS06960 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.72 HER17_RS01075 dihydroxy-acid dehydratase low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.17 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 0.71 Psyr_0469 dihydroxyacid dehydratase low > 86
Pseudomonas syringae pv. syringae B728a 0.17 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 0.71 Psyr_0469 dihydroxyacid dehydratase low > 86
Pseudomonas simiae WCS417 0.17 PS417_19225 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.71 PS417_26890 dihydroxy-acid dehydratase low > 88
Enterobacter sp. TBS_079 0.17 MPMX20_03259 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.73 MPMX20_04499 Dihydroxy-acid dehydratase low > 85
Pseudomonas putida KT2440 0.17 PP_1751 methyltransferase/FAD-dependent oxidoreductase 0.72 PP_5128 Dihydroxy-acid dehydratase low > 96
Marinobacter adhaerens HP15 0.17 HP15_1540 protein YfcK 0.67 HP15_595 dihydroxy-acid dehydratase low > 73
Dickeya dadantii 3937 0.16 DDA3937_RS14515 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.73 DDA3937_RS20155 dihydroxy-acid dehydratase low > 74
Pantoea sp. MT58 0.16 IAI47_06175 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.72 IAI47_01035 dihydroxy-acid dehydratase low > 76
Dickeya dianthicola ME23 0.16 DZA65_RS15420 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.73 DZA65_RS21335 dihydroxy-acid dehydratase low > 75
Dickeya dianthicola 67-19 0.16 HGI48_RS14485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.73 HGI48_RS20295 dihydroxy-acid dehydratase low > 71
Pseudomonas fluorescens SBW25-INTG 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.71 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas fluorescens SBW25 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.71 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Rahnella sp. WP5 0.15 EX31_RS19660 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.69 EX31_RS15005 dihydroxy-acid dehydratase low > 89
Shewanella sp. ANA-3 0.15 Shewana3_1474 FAD dependent oxidoreductase (RefSeq) 0.70 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.55 59
Erwinia tracheiphila SCR3 0.14 LU632_RS07800 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.70 LU632_RS24400 ilvD dihydroxy-acid dehydratase low > 74
Acidovorax sp. GW101-3H11 0.14 Ac3H11_579 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.73 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 79
Variovorax sp. SCN45 0.14 GFF1245 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.29 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Shewanella oneidensis MR-1 0.13 SO3073 conserved hypothetical protein (NCBI ptt file) 0.69 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) low > 76
Castellaniella sp019104865 MT123 0.13 ABCV34_RS09580 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.73 ABCV34_RS14810 dihydroxy-acid dehydratase low > 48
Alteromonas macleodii MIT1002 0.12 MIT1002_02542 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.71 MIT1002_04041 Dihydroxy-acid dehydratase low > 70
Shewanella loihica PV-4 0.12 Shew_2411 FAD dependent oxidoreductase (RefSeq) 0.69 Shew_0292 dihydroxy-acid dehydratase (RefSeq) 0.34 46
Variovorax sp. OAS795 0.12 ABID97_RS15455 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.29 ABID97_RS17500 dihydroxy-acid dehydratase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.11 A4249_RS15340 tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD 0.25 A4249_RS10030 dihydroxy-acid dehydratase low > 48
Acinetobacter radioresistens SK82 0.09 MPMX26_02642 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.29 MPMX26_03019 Dihydroxy-acid dehydratase low > 36
Caulobacter crescentus NA1000 Δfur 0.08 CCNA_00785 tRNA methyltransferase/FAD-dependent oxidoreductase MnmC 0.72 CCNA_03139 dihydroxy-acid dehydratase low > 67
Caulobacter crescentus NA1000 0.08 CCNA_00785 tRNA methyltransferase/FAD-dependent oxidoreductase MnmC 0.72 CCNA_03139 dihydroxy-acid dehydratase low > 66

Not shown: 0 genomes with orthologs for HSERO_RS23825 only; 37 genomes with orthologs for HSERO_RS02650 only