| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS01560 | | transporter | 1.0 | HSERO_RS01565 | | hemolysin secretion protein D | 0.44 | 2 |
| Dechlorosoma suillum PS | 0.79 | Dsui_2026 | | hydrophobe/amphiphile efflux-1 (HAE1) family transporter | 0.59 | Dsui_2025 | | RND family efflux transporter, MFP subunit | low | > 51 |
| Paraburkholderia sabiae LMG 24235 | 0.77 | QEN71_RS20105 | | efflux RND transporter permease subunit | 0.55 | QEN71_RS20100 | | efflux RND transporter periplasmic adaptor subunit | 0.67 | 146 |
| Burkholderia phytofirmans PsJN | 0.77 | BPHYT_RS22515 | | multidrug efflux RND transporter permease subunit | 0.57 | BPHYT_RS22510 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.50 | 1 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.76 | H281DRAFT_03190 | | multidrug efflux pump | 0.57 | H281DRAFT_03189 | | membrane fusion protein, multidrug efflux system | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.76 | ABIE53_004106 | | multidrug efflux pump | 0.58 | ABIE53_004107 | | multidrug efflux system membrane fusion protein | 0.60 | 2 |
| Azospirillum brasilense Sp245 | 0.73 | AZOBR_RS28205 | | transporter | 0.31 | AZOBR_RS16480 | | hemolysin secretion protein D | low | > 97 |
| Ralstonia sp. UNC404CL21Col | 0.73 | ABZR87_RS19400 | | efflux RND transporter permease subunit | 0.56 | ABZR87_RS19405 | | efflux RND transporter periplasmic adaptor subunit | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.72 | RPSI07_RS05175 | | multidrug efflux RND transporter permease subunit | 0.54 | RPSI07_RS05170 | | efflux RND transporter periplasmic adaptor subunit | 0.93 | 1 |
| Azospirillum sp. SherDot2 | 0.71 | MPMX19_02968 | | multidrug efflux RND transporter permease subunit OqxB28 | 0.52 | MPMX19_02967 | | Efflux pump periplasmic linker BepF | low | > 112 |
| Cupriavidus basilensis FW507-4G11 | 0.69 | RR42_RS27685 | | multidrug efflux RND transporter permease subunit | 0.50 | RR42_RS27680 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.48 | 1 |
| Acidovorax sp. GW101-3H11 | 0.69 | Ac3H11_258 | | RND multidrug efflux transporter; Acriflavin resistance protein | 0.44 | Ac3H11_259 | | Probable Co/Zn/Cd efflux system membrane fusion protein | 0.42 | 1 |
| Variovorax sp. SCN45 | 0.68 | GFF429 | | RND efflux system, inner membrane transporter | 0.46 | GFF430 | | RND efflux system, membrane fusion protein | low | > 127 |
| Magnetospirillum magneticum AMB-1 | 0.67 | AMB_RS09480 | | multidrug efflux RND transporter permease subunit | 0.35 | AMB_RS09485 | | efflux RND transporter periplasmic adaptor subunit | low | > 64 |
| Variovorax sp. OAS795 | 0.67 | ABID97_RS17350 | | efflux RND transporter permease subunit | 0.45 | ABID97_RS17355 | | efflux RND transporter periplasmic adaptor subunit | 0.32 | 61 |
| Rhizobium sp. OAE497 | 0.67 | ABIE40_RS14875 | | multidrug efflux RND transporter permease subunit | 0.41 | ABIE40_RS14880 | | efflux RND transporter periplasmic adaptor subunit | low | > 107 |
| Pseudomonas sp. RS175 | 0.66 | PFR28_02013 | | multidrug efflux RND transporter permease subunit OqxB10 | 0.43 | PFR28_02012 | | Multidrug resistance protein MdtA | low | > 88 |
| Rhodospirillum rubrum S1H | 0.66 | Rru_A0886 | | Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) | 0.36 | Rru_A0887 | | Secretion protein HlyD (NCBI) | low | > 58 |
| Sinorhizobium meliloti 1021 | 0.66 | SMc01095 | | multidrug-efflux system transmembrane protein | 0.37 | SMc01094 | | multidrug efflux system transmembrane protein | low | > 103 |
| Agrobacterium fabrum C58 | 0.63 | Atu2483 | | AcrB/AcrD/AcrF family protein | 0.40 | Atu2482 | | HlyD family secretion protein | 0.86 | 1 |
| Pseudomonas syringae pv. syringae B728a | 0.62 | Psyr_2968 | | Hydrophobe/amphiphile efflux-1 HAE1 | 0.43 | Psyr_2967 | | Secretion protein HlyD | 0.48 | 9 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.62 | Psyr_2968 | | Hydrophobe/amphiphile efflux-1 HAE1 | 0.43 | Psyr_2967 | | Secretion protein HlyD | 0.91 | 2 |
| Pseudomonas fluorescens FW300-N2C3 | 0.62 | AO356_27605 | | transporter | 0.39 | AO356_27600 | | RND transporter MFP subunit | 0.57 | 3 |
| Pseudomonas putida KT2440 | 0.61 | PP_3426 | | Multidrug efflux RND transporter MexF | 0.41 | PP_3425 | | Efflux transporter RND family, MFP subunit | 0.20 | 20 |
| Pseudomonas simiae WCS417 | 0.61 | PS417_13190 | | transporter | 0.39 | PS417_13195 | | RND transporter MFP subunit | 0.21 | 5 |
| Pseudomonas fluorescens SBW25 | 0.61 | PFLU_RS14260 | | efflux RND transporter permease subunit | 0.40 | PFLU_RS14265 | | efflux RND transporter periplasmic adaptor subunit | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.61 | PFLU_RS14260 | | efflux RND transporter permease subunit | 0.40 | PFLU_RS14265 | | efflux RND transporter periplasmic adaptor subunit | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.61 | AO353_23960 | | transporter | 0.41 | AO353_23965 | | RND transporter MFP subunit | 0.32 | 4 |
| Pseudomonas fluorescens GW456-L13 | 0.61 | PfGW456L13_3060 | | Multidrug efflux transporter MexF | 0.42 | PfGW456L13_3061 | | Multidrug efflux membrane fusion protein MexE | low | > 87 |
| Rhodanobacter denitrificans FW104-10B01 | 0.61 | LRK54_RS08140 | | multidrug efflux RND transporter permease subunit | 0.36 | LRK54_RS08135 | | efflux RND transporter periplasmic adaptor subunit | 0.46 | 1 |
| Pseudomonas fluorescens FW300-N1B4 | 0.61 | Pf1N1B4_4864 | | Multidrug efflux transporter MexF | 0.42 | Pf1N1B4_4865 | | Multidrug efflux membrane fusion protein MexE | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.61 | Pf6N2E2_824 | | Multidrug efflux transporter MexF | 0.43 | Pf6N2E2_947 | | Multidrug efflux membrane fusion protein MexE | low | > 103 |
| Rhodanobacter denitrificans MT42 | 0.61 | LRK55_RS07890 | | efflux RND transporter permease subunit | 0.35 | LRK55_RS07885 | | efflux RND transporter periplasmic adaptor subunit | 0.96 | 1 |
| Rhodanobacter sp. FW510-T8 | 0.60 | OKGIIK_14955 | oqxB | multidrug efflux RND transporter permease subunit | 0.34 | OKGIIK_14950 | | Efflux RND transporter periplasmic adaptor subunit | low | > 52 |
| Pseudomonas stutzeri RCH2 | 0.60 | Psest_2144 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | 0.40 | Psest_2145 | | RND family efflux transporter, MFP subunit | 0.45 | 1 |
| Pseudomonas sp. S08-1 | 0.60 | OH686_01005 | | Multidrug efflux system, inner membrane proton/drug antiporter (RND type) | 0.38 | OH686_01010 | | Multidrug efflux system, membrane fusion component | 0.94 | 13 |
| Dyella japonica UNC79MFTsu3.2 | 0.60 | ABZR86_RS15400 | | efflux RND transporter permease subunit | 0.37 | ABZR86_RS15405 | | efflux RND transporter periplasmic adaptor subunit | 0.92 | 2 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_1078 | | hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) | 0.37 | Shewana3_1077 | | RND family efflux transporter MFP subunit (RefSeq) | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.58 | MIT1002_02998 | | Efflux pump membrane transporter BepE | 0.34 | MIT1002_02999 | | Efflux pump periplasmic linker BepF | low | > 70 |
| Pantoea sp. MT58 | 0.57 | IAI47_10310 | | multidrug efflux RND transporter permease subunit OqxB | 0.37 | IAI47_10305 | | efflux RND transporter periplasmic adaptor subunit | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.56 | GFF4246 | | RND efflux system, inner membrane transporter CmeB | 0.29 | GFF4247 | | RND efflux system, membrane fusion protein CmeA | low | > 78 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.56 | Xcc-8004.3477.1 | | RND efflux system, inner membrane transporter CmeB | 0.36 | Xcc-8004.3478.1 | | RND efflux system, membrane fusion protein CmeA | low | > 74 |
| Klebsiella michiganensis M5al | 0.55 | BWI76_RS12955 | | multidrug efflux RND transporter permease subunit OqxB | 0.36 | BWI76_RS12950 | | acriflavin resistance protein AcrA | 0.29 | 36 |
| Rahnella sp. WP5 | 0.55 | EX31_RS01495 | | multidrug efflux RND transporter permease subunit | 0.36 | EX31_RS01490 | | efflux RND transporter periplasmic adaptor subunit | 0.27 | 42 |
| Enterobacter sp. TBS_079 | 0.55 | MPMX20_01155 | | multidrug efflux RND transporter permease subunit OqxB3 | 0.36 | MPMX20_01154 | | Multidrug resistance protein MdtE | low | > 85 |
| Enterobacter asburiae PDN3 | 0.54 | EX28DRAFT_1472 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | 0.37 | EX28DRAFT_1473 | | RND family efflux transporter, MFP subunit | low | > 76 |
| Serratia liquefaciens MT49 | 0.54 | IAI46_13385 | | efflux RND transporter permease subunit | 0.36 | IAI46_09930 | | efflux RND transporter periplasmic adaptor subunit | low | > 86 |
| Sphingomonas koreensis DSMZ 15582 | 0.53 | Ga0059261_0436 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | 0.29 | Ga0059261_1851 | | RND family efflux transporter, MFP subunit | low | > 68 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS01060 | | multidrug efflux RND transporter permease subunit | 0.34 | ABIE51_RS01055 | | efflux RND transporter periplasmic adaptor subunit | 0.92 | 1 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.45 | A4249_RS09925 | | multidrug efflux RND transporter permease subunit | 0.31 | A4249_RS09930 | | efflux RND transporter periplasmic adaptor subunit | 0.98 | 2 |
Not shown: 5 genomes with orthologs for HSERO_RS01560 only; 8 genomes with orthologs for HSERO_RS01565 only