Conservation of cofitness between HGI48_RS18515 and HGI48_RS16060 in Dickeya dianthicola 67-19

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola 67-19 1.0 HGI48_RS18515 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 1.0 HGI48_RS16060 polynucleotide adenylyltransferase PcnB 0.73 2
Dickeya dianthicola ME23 0.99 DZA65_RS19650 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.99 DZA65_RS17145 polynucleotide adenylyltransferase PcnB low > 75
Dickeya dadantii 3937 0.97 DDA3937_RS18580 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.95 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB low > 74
Pectobacterium carotovorum WPP14 0.88 HER17_RS02615 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.84 HER17_RS05570 polynucleotide adenylyltransferase PcnB low > 75
Serratia liquefaciens MT49 0.85 IAI46_01800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.77 IAI46_21220 polynucleotide adenylyltransferase PcnB 0.57 9
Klebsiella michiganensis M5al 0.84 BWI76_RS02820 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.75 BWI76_RS05005 polynucleotide adenylyltransferase low > 92
Enterobacter sp. TBS_079 0.83 MPMX20_00515 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.74 MPMX20_00829 Poly(A) polymerase I low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF881 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.74 GFF89 Poly(A) polymerase (EC 2.7.7.19) low > 78
Escherichia coli ECRC62 0.83 BNILDI_07315 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.75 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB 0.93 17
Escherichia coli ECOR38 0.83 HEPCGN_10140 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.75 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB 0.91 4
Escherichia coli BL21 0.83 ECD_04101 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.75 ECD_00142 poly(A) polymerase low > 61
Escherichia coli ECRC99 0.83 KEDOAH_16215 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.75 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB — —
Escherichia coli ECRC101 0.83 MCAODC_02445 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.75 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB 0.64 37
Escherichia coli ECRC100 0.83 OKFHMN_11940 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.75 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB 0.82 27
Escherichia fergusonii Becca 0.83 EFB2_04300 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.75 EFB2_03901 Poly(A) polymerase I low > 86
Escherichia coli ECOR27 0.83 NOLOHH_04200 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.75 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB low > 75
Escherichia coli ECRC98 0.83 JDDGAC_15580 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.75 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB 0.97 2
Escherichia coli HS(pFamp)R (ATCC 700891) 0.83 OHPLBJKB_03802 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.75 OHPLBJKB_03519 Poly(A) polymerase I low > 73
Escherichia coli ECRC102 0.83 NIAGMN_09790 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.75 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB — —
Escherichia coli Nissle 1917 0.83 ECOLIN_RS24560 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.77 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB 0.81 8
Escherichia coli BW25113 0.83 b4233 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) 0.77 b0143 pcnB poly(A) polymerase I (VIMSS) low > 76
Enterobacter asburiae PDN3 0.83 EX28DRAFT_3420 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.74 EX28DRAFT_3732 poly(A) polymerase low > 76
Pantoea sp. MT58 0.80 IAI47_02755 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.75 IAI47_15645 polynucleotide adenylyltransferase PcnB low > 76
Erwinia tracheiphila SCR3 0.78 LU632_RS02135 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.76 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB low > 74
Vibrio cholerae E7946 ATCC 55056 0.67 CSW01_12875 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.55 CSW01_03145 polynucleotide adenylyltransferase PcnB low > 62
Shewanella sp. ANA-3 0.61 Shewana3_0791 UDP-N-acetylmuramate (RefSeq) 0.52 Shewana3_3406 poly(A) polymerase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.61 SO3805 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) 0.53 SO0872 pcnB polyA polymerase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.60 Shew_3144 UDP-N-acetylmuramate (RefSeq) 0.52 Shew_3131 poly(A) polymerase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.59 Sama_0769 UDP-N-acetylmuramate (RefSeq) 0.50 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.59 MIT1002_00168 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.51 MIT1002_03692 Poly(A) polymerase I precursor low > 70
Pseudomonas simiae WCS417 0.58 PS417_24800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.42 PS417_23900 poly(A) polymerase low > 88
Ralstonia solanacearum PSI07 0.57 RPSI07_RS11275 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.36 RPSI07_RS12000 polynucleotide adenylyltransferase PcnB low > 81
Ralstonia solanacearum GMI1000 0.57 RS_RS13915 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.36 RS_RS13165 polynucleotide adenylyltransferase PcnB low > 80
Pseudomonas putida KT2440 0.57 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.41 PP_4697 poly(A) polymerase low > 96
Pseudomonas fluorescens SBW25 0.57 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.42 PFLU_RS25740 polynucleotide adenylyltransferase PcnB low > 109
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS05970 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.36 RALBFv3_RS05300 polynucleotide adenylyltransferase PcnB low > 76
Pseudomonas fluorescens SBW25-INTG 0.57 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.42 PFLU_RS25740 polynucleotide adenylyltransferase PcnB low > 109
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_06550 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.41 AO353_14395 poly(A) polymerase low > 101
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_15235 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.41 AO356_16070 poly(A) polymerase low > 104
Pseudomonas sp. RS175 0.57 PFR28_03883 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.41 PFR28_03719 Poly(A) polymerase I low > 88
Pseudomonas fluorescens GW456-L13 0.56 PfGW456L13_1344 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.41 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) low > 87
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.42 Psyr_0830 Poly(A) polymerase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.42 Psyr_0830 Poly(A) polymerase low > 86
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS01630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.36 ABZR87_RS00935 polynucleotide adenylyltransferase PcnB low > 80
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_2676 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.42 Pf1N1B4_2856 Poly(A) polymerase (EC 2.7.7.19) — —
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_4982 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.41 Pf6N2E2_5155 Poly(A) polymerase (EC 2.7.7.19) low > 103
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS27145 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.35 QEN71_RS26465 polynucleotide adenylyltransferase PcnB low > 153
Pseudomonas stutzeri RCH2 0.55 Psest_0673 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.40 Psest_0998 poly(A) polymerase low > 67
Burkholderia phytofirmans PsJN 0.54 BPHYT_RS16990 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.36 BPHYT_RS03620 poly(A) polymerase 0.40 39
Dechlorosoma suillum PS 0.54 Dsui_0384 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.36 Dsui_1515 poly(A) polymerase low > 51
Pseudomonas sp. S08-1 0.54 OH686_09400 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.42 OH686_17255 Poly(A) polymerase 0.70 28
Kangiella aquimarina DSM 16071 0.52 B158DRAFT_2035 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.47 B158DRAFT_0058 poly(A) polymerase low > 40
Marinobacter adhaerens HP15 0.51 HP15_616 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.45 HP15_326 polyA polymerase low > 73
Castellaniella sp019104865 MT123 0.50 ABCV34_RS10690 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.37 ABCV34_RS08810 polynucleotide adenylyltransferase PcnB low > 48
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS17365 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.41 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB low > 74
Variovorax sp. SCN45 0.50 GFF4445 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-) 0.33 GFF3943 Poly(A) polymerase (EC 2.7.7.19) low > 127
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_17020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase 0.43 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase low > 52
Variovorax sp. OAS795 0.48 ABID97_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.32 ABID97_RS08710 polynucleotide adenylyltransferase PcnB low > 91
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS06610 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.43 LRK54_RS15105 polynucleotide adenylyltransferase PcnB low > 59
Rhodanobacter denitrificans MT42 0.48 LRK55_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.43 LRK55_RS14820 polynucleotide adenylyltransferase PcnB low > 63
Hydrogenophaga sp. GW460-11-11-14-LB1 0.47 GFF583 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.32 GFF3438 Poly(A) polymerase (EC 2.7.7.19) — —
Xanthomonas campestris pv. campestris strain 8004 0.46 Xcc-8004.1107.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) 0.41 Xcc-8004.3054.1 Poly(A) polymerase (EC 2.7.7.19) low > 74
Lysobacter sp. OAE881 0.43 ABIE51_RS17450 Mur ligase family protein 0.42 ABIE51_RS08015 polynucleotide adenylyltransferase PcnB low > 62
Acidovorax sp. GW101-3H11 0.43 Ac3H11_4032 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.31 Ac3H11_1313 Poly(A) polymerase (EC 2.7.7.19) — —

Not shown: 11 genomes with orthologs for HGI48_RS18515 only; 0 genomes with orthologs for HGI48_RS16060 only