Conservation of cofitness between HER17_RS12930 and HER17_RS16220 in Pectobacterium carotovorum WPP14

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12930 microcin C ABC transporter permease 1.0 HER17_RS16220 DNA mismatch repair protein MutS 0.54 12
Dickeya dianthicola 67-19 0.87 HGI48_RS09220 ABC transporter permease subunit 0.87 HGI48_RS05230 DNA mismatch repair protein MutS low > 71
Dickeya dadantii 3937 0.87 DDA3937_RS09180 ABC transporter permease subunit 0.88 DDA3937_RS05230 DNA mismatch repair protein MutS low > 74
Dickeya dianthicola ME23 0.85 DZA65_RS09525 ABC transporter permease subunit 0.88 DZA65_RS05570 DNA mismatch repair protein MutS low > 75
Serratia liquefaciens MT49 0.79 IAI46_17325 ABC transporter permease subunit 0.88 IAI46_03800 DNA mismatch repair protein MutS low > 86
Escherichia coli BW25113 0.76 b2179 yejE predicted oligopeptide transporter subunit (NCBI) 0.81 b2733 mutS DNA mismatch repair protein (NCBI) low > 76
Escherichia coli ECOR27 0.76 NOLOHH_14955 yejE Inner membrane ABC transporter permease protein YejE 0.81 NOLOHH_12370 mutS DNA mismatch repair protein MutS low > 75
Escherichia coli BL21 0.76 ECD_02109 microcin C ABC transporter permease 0.81 ECD_02583 methyl-directed mismatch repair protein low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.76 GFF3757 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) 0.84 GFF4773 DNA mismatch repair protein MutS low > 78
Escherichia coli Nissle 1917 0.76 ECOLIN_RS12740 ABC transporter permease 0.81 ECOLIN_RS15275 DNA mismatch repair protein MutS — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.76 OHPLBJKB_01530 Inner membrane ABC transporter permease protein YejE 0.81 OHPLBJKB_01000 DNA mismatch repair protein MutS low > 73
Escherichia fergusonii Becca 0.76 EFB2_01677 Inner membrane ABC transporter permease protein YejE 0.82 EFB2_01179 DNA mismatch repair protein MutS low > 86
Escherichia coli ECRC62 0.76 BNILDI_13875 yejE Inner membrane ABC transporter permease protein YejE 0.81 BNILDI_10920 mutS DNA mismatch repair protein MutS low > 75
Escherichia coli ECRC101 0.76 MCAODC_14430 yejE Inner membrane ABC transporter permease protein YejE 0.81 MCAODC_11050 mutS DNA mismatch repair protein MutS low > 87
Escherichia coli ECRC99 0.76 KEDOAH_04805 yejE Inner membrane ABC transporter permease protein YejE 0.81 KEDOAH_07610 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECRC102 0.76 NIAGMN_21145 yejE Inner membrane ABC transporter permease protein YejE 0.81 NIAGMN_18295 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECOR38 0.76 HEPCGN_22645 yejE Inner membrane ABC transporter permease protein YejE 0.81 HEPCGN_19705 mutS DNA mismatch repair protein MutS low > 87
Escherichia coli ECRC98 0.76 JDDGAC_27340 yejE Inner membrane ABC transporter permease protein YejE 0.81 JDDGAC_24190 mutS DNA mismatch repair protein MutS low > 86
Escherichia coli ECRC100 0.76 OKFHMN_23380 yejE Inner membrane ABC transporter permease protein YejE 0.81 OKFHMN_20525 mutS DNA mismatch repair protein MutS low > 80
Klebsiella michiganensis M5al 0.75 BWI76_RS19790 putative binding-protein-dependent transporter 0.83 BWI76_RS22600 DNA mismatch repair protein MutS low > 92
Erwinia tracheiphila SCR3 0.75 LU632_RS17575 microcin C ABC transporter permease 0.84 LU632_RS06485 mutS DNA mismatch repair protein MutS low > 74
Enterobacter sp. TBS_079 0.74 MPMX20_03145 Inner membrane ABC transporter permease protein YejE 0.83 MPMX20_03619 DNA mismatch repair protein MutS low > 85
Enterobacter asburiae PDN3 0.74 EX28DRAFT_0382 ABC-type uncharacterized transport system, permease component 0.83 EX28DRAFT_2829 DNA mismatch repair protein MutS low > 76
Rahnella sp. WP5 0.73 EX31_RS19140 ABC transporter permease subunit 0.86 EX31_RS07820 DNA mismatch repair protein MutS low > 89
Vibrio cholerae E7946 ATCC 55056 0.72 CSW01_17175 ABC transporter permease 0.71 CSW01_02840 DNA mismatch repair protein MutS low > 62
Pantoea sp. MT58 0.69 IAI47_06605 ABC transporter permease subunit 0.83 IAI47_04240 DNA mismatch repair protein MutS low > 76
Marinobacter adhaerens HP15 0.67 HP15_1809 peptide ABC transporter, permease protein 0.59 HP15_1047 DNA mismatch repair protein MutS low > 73
Pseudomonas sp. S08-1 0.65 OH686_03610 ABC transporter, permease protein 2 0.55 OH686_18195 DNA mismatch repair protein MutS low > 80
Pseudomonas stutzeri RCH2 0.65 Psest_2065 ABC-type uncharacterized transport system, permease component 0.56 Psest_2875 DNA mismatch repair protein MutS — —
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_1756 Binding-protein-dependent transport systems inner membrane component 0.56 Psyr_1376 DNA mismatch repair protein MutS low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_1756 Binding-protein-dependent transport systems inner membrane component 0.56 Psyr_1376 DNA mismatch repair protein MutS low > 86
Azospirillum sp. SherDot2 0.64 MPMX19_02170 Inner membrane ABC transporter permease protein YejE 0.34 MPMX19_00908 DNA mismatch repair protein MutS low > 112
Rhodospirillum rubrum S1H 0.63 Rru_A3168 Binding-protein-dependent transport systems inner membrane component (NCBI) 0.33 Rru_A3541 MutS 1 protein (NCBI) low > 58
Pseudomonas sp. RS175 0.63 PFR28_01547 Inner membrane ABC transporter permease protein YejE 0.56 PFR28_00429 DNA mismatch repair protein MutS low > 88
Pseudomonas fluorescens SBW25 0.63 PFLU_RS12885 ABC transporter permease 0.56 PFLU_RS05765 DNA mismatch repair protein MutS low > 109
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS12885 ABC transporter permease 0.56 PFLU_RS05765 DNA mismatch repair protein MutS 0.28 73
Pseudomonas putida KT2440 0.62 PP_4149 putative inner membrane ABC transporter permease protein 0.56 PP_1626 DNA mismatch repair protein MutS low > 96
Rhizobium sp. OAE497 0.62 ABIE40_RS00625 ABC transporter permease 0.32 ABIE40_RS01775 DNA mismatch repair protein MutS low > 107
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_3345 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) 0.55 PfGW456L13_4672 DNA mismatch repair protein MutS low > 87
Pseudomonas fluorescens FW300-N2E2 0.62 Pf6N2E2_582 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) 0.56 Pf6N2E2_3035 DNA mismatch repair protein MutS low > 103
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_23465 ABC transporter permease 0.56 AO353_16625 DNA mismatch repair protein MutS low > 101
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_24455 ABC transporter permease 0.56 AO356_05875 DNA mismatch repair protein MutS low > 104
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_4591 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) 0.55 Pf1N1B4_3117 DNA mismatch repair protein MutS — —
Bosea sp. OAE506 0.61 ABIE41_RS23970 ABC transporter permease 0.30 ABIE41_RS03650 DNA mismatch repair protein MutS low > 77
Pseudomonas simiae WCS417 0.61 PS417_12195 ABC transporter permease 0.56 PS417_05680 DNA mismatch repair protein MutS low > 88
Magnetospirillum magneticum AMB-1 0.60 AMB_RS22190 ABC transporter permease 0.32 AMB_RS01455 DNA mismatch repair protein MutS — —
Rhodopseudomonas palustris CGA009 0.60 TX73_019115 ABC transporter permease 0.33 TX73_002655 DNA mismatch repair protein MutS low > 86
Acinetobacter radioresistens SK82 0.58 MPMX26_02271 Inner membrane ABC transporter permease protein YejE 0.46 MPMX26_01954 DNA mismatch repair protein MutS low > 36
Agrobacterium fabrum C58 0.58 Atu0189 ABC transporter, membrane spanning protein (peptide) 0.32 Atu0345 DNA mismatch repair protein, MutS family low > 89
Sinorhizobium meliloti 1021 0.57 SMc02830 ABC transporter permease 0.32 SMc01125 DNA mismatch repair protein MutS — —
Desulfovibrio vulgaris Hildenborough JW710 0.56 DVU2386 oppC ABC transporter, permease protein (TIGR) 0.31 DVU1649 mutS DNA mismatch repair protein MutS (TIGR) low > 55
Dinoroseobacter shibae DFL-12 0.55 Dshi_0657 binding-protein-dependent transport systems inner membrane component (RefSeq) 0.36 Dshi_3466 DNA mismatch repair protein MutS (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.53 PGA1_c30160 ABC transporter permease protein 0.33 PGA1_c35000 DNA mismatch repair protein MutS low > 62
Variovorax sp. SCN45 0.52 GFF227 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) 0.42 GFF6634 DNA mismatch repair protein MutS low > 127
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_00562 microcin C transport system permease protein 0.48 H281DRAFT_00537 DNA mismatch repair protein MutS low > 103
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS07165 peptide ABC transporter permease 0.47 BPHYT_RS12475 DNA mismatch repair protein MutS low > 109
Paraburkholderia graminis OAS925 0.50 ABIE53_002548 microcin C transport system permease protein 0.47 ABIE53_002719 DNA mismatch repair protein MutS low > 113
Acidovorax sp. GW101-3H11 0.50 Ac3H11_2909 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) 0.43 Ac3H11_3641 DNA mismatch repair protein MutS 0.36 23
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF4337 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) 0.41 GFF3599 DNA mismatch repair protein MutS low > 90
Ralstonia solanacearum GMI1000 0.49 RS_RS05860 ABC transporter permease 0.47 RS_RS05735 DNA mismatch repair protein MutS low > 80
Ralstonia solanacearum PSI07 0.49 RPSI07_RS18330 ABC transporter permease 0.47 RPSI07_RS18440 DNA mismatch repair protein MutS low > 81
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS13375 peptide ABC transporter permease 0.47 RR42_RS06285 DNA mismatch repair protein MutS low > 128
Ralstonia solanacearum UW163 0.48 UW163_RS12515 ABC transporter permease 0.47 UW163_RS12390 DNA mismatch repair protein MutS — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS15045 ABC transporter permease 0.47 RALBFv3_RS14920 DNA mismatch repair protein MutS low > 76
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS10690 ABC transporter permease 0.48 ABZR87_RS10580 DNA mismatch repair protein MutS low > 80
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS17135 peptide ABC transporter permease 0.47 HSERO_RS16360 DNA mismatch repair protein MutS low > 78
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS06180 ABC transporter permease 0.47 QEN71_RS06085 DNA mismatch repair protein MutS low > 153
Variovorax sp. OAS795 0.47 ABID97_RS16510 ABC transporter permease 0.42 ABID97_RS20815 DNA mismatch repair protein MutS low > 91

Not shown: 0 genomes with orthologs for HER17_RS12930 only; 32 genomes with orthologs for HER17_RS16220 only