Conservation of cofitness between HER17_RS06930 and HER17_RS05670 in Pectobacterium carotovorum WPP14

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS06930 50S ribosomal protein L3 N(5)-glutamine methyltransferase 1.0 HER17_RS05670 sulfate ABC transporter substrate-binding protein 0.89 12
Dickeya dadantii 3937 0.90 DDA3937_RS14585 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.90 DDA3937_RS15850 sulfate ABC transporter substrate-binding protein low > 74
Dickeya dianthicola 67-19 0.90 HGI48_RS14535 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.89 HGI48_RS15990 sulfate ABC transporter substrate-binding protein low > 71
Dickeya dianthicola ME23 0.90 DZA65_RS15470 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.89 DZA65_RS17075 sulfate ABC transporter substrate-binding protein low > 75
Serratia liquefaciens MT49 0.86 IAI46_18030 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.57 IAI46_24640 sulfate ABC transporter substrate-binding protein low > 86
Enterobacter asburiae PDN3 0.85 EX28DRAFT_0274 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.60 EX28DRAFT_4391 sulfate/thiosulfate-binding protein low > 76
Enterobacter sp. TBS_079 0.85 MPMX20_03265 50S ribosomal protein L3 glutamine methyltransferase 0.59 MPMX20_04551 Sulfate-binding protein low > 85
Rahnella sp. WP5 0.84 EX31_RS19690 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.54 EX31_RS14305 sulfate ABC transporter substrate-binding protein low > 89
Klebsiella michiganensis M5al 0.84 BWI76_RS20440 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.58 BWI76_RS27500 sulfate transporter subunit low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF1951 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.59 GFF2284 Sulfate-binding protein Sbp low > 78
Escherichia fergusonii Becca 0.82 EFB2_01528 50S ribosomal protein L3 glutamine methyltransferase 0.60 EFB2_04701 Sulfate-binding protein low > 86
Escherichia coli BW25113 0.82 b2330 yfcB putative adenine-specific methylase (VIMSS) 0.60 b3917 sbp sulfate transporter subunit (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_01375 50S ribosomal protein L3 glutamine methyltransferase 0.60 OHPLBJKB_04134 Sulfate-binding protein low > 73
Escherichia coli Nissle 1917 0.82 ECOLIN_RS13495 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.60 ECOLIN_RS22565 sulfate/thiosulfate ABC transporter substrate-binding protein Sbp low > 55
Escherichia coli ECRC98 0.82 JDDGAC_26570 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.59 JDDGAC_17445 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp low > 86
Escherichia coli ECRC102 0.82 NIAGMN_20385 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.59 NIAGMN_11575 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp
Escherichia coli ECRC99 0.82 KEDOAH_05585 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.59 KEDOAH_14340 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp
Escherichia coli ECRC100 0.82 OKFHMN_22610 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.59 OKFHMN_13820 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp low > 80
Escherichia coli ECRC101 0.82 MCAODC_13650 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.59 MCAODC_04320 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp low > 87
Erwinia tracheiphila SCR3 0.82 LU632_RS07770 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.56 LU632_RS21830 sulfate ABC transporter substrate-binding protein low > 74
Escherichia coli ECOR38 0.82 HEPCGN_21815 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.60 HEPCGN_12465 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp low > 87
Escherichia coli BL21 0.82 ECD_02255 N5-glutamine methyltransferase 0.60 ECD_03802 sulfate transporter subunit low > 61
Escherichia coli ECRC62 0.82 BNILDI_13165 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.60 BNILDI_05575 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp low > 75
Pantoea sp. MT58 0.82 IAI47_06145 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.58 IAI47_00785 sulfate ABC transporter substrate-binding protein low > 76
Escherichia coli ECOR27 0.81 NOLOHH_14245 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.60 NOLOHH_05955 sbp sulfate/thiosulfate ABC transporter substrate-binding protein Sbp low > 75
Shewanella oneidensis MR-1 0.60 SO3080 hemK family protein (NCBI ptt file) 0.62 SO4652 sbp sulfate ABC transporter, periplasmic sulfate-binding protein (NCBI ptt file) low > 76
Pseudomonas sp. S08-1 0.56 OH686_00665 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.68 OH686_11670 Sulfate and thiosulfate binding protein CysP low > 80
Pseudomonas stutzeri RCH2 0.55 Psest_1995 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.69 Psest_4060 sulfate/thiosulfate-binding protein low > 67
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_5819 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.62 Pf6N2E2_4006 Sulfate and thiosulfate binding protein CysP low > 103
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_19525 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.62 AO356_10685 ABC transporter permease low > 104
Pseudomonas sp. RS175 0.54 PFR28_03129 50S ribosomal protein L3 glutamine methyltransferase 0.62 PFR28_04762 Sulfate-binding protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_02265 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.64 AO353_11540 ABC transporter permease low > 101
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_3777 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.62 Pf1N1B4_1727 Sulfate and thiosulfate binding protein CysP low > 87
Pseudomonas fluorescens SBW25 0.53 PFLU_RS21295 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.62 PFLU_RS00945 sulfate ABC transporter substrate-binding protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS21295 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.62 PFLU_RS00945 sulfate ABC transporter substrate-binding protein low > 109
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_1850 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase 0.64 Psyr_0084 extracellular solute-binding protein, family 1 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_1850 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase 0.64 Psyr_0084 extracellular solute-binding protein, family 1 low > 86
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_4168 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.61 PfGW456L13_486 Sulfate and thiosulfate binding protein CysP low > 87
Pseudomonas simiae WCS417 0.53 PS417_19330 SAM-dependent methyltransferase 0.62 PS417_00930 ABC transporter permease
Pseudomonas putida KT2440 0.53 PP_1827 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 0.64 PP_5171 sulfate ABC transporter low > 96
Acinetobacter radioresistens SK82 0.46 MPMX26_01339 50S ribosomal protein L3 glutamine methyltransferase 0.61 MPMX26_02166 Sulfate-binding protein
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.1953.1 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.56 Xcc-8004.4087.1 Sulfate and thiosulfate binding protein CysP low > 74
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS08050 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.55 ABZR86_RS02880 sulfate ABC transporter substrate-binding protein low > 74
Castellaniella sp019104865 MT123 0.45 ABCV34_RS05175 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.53 ABCV34_RS03935 sulfate ABC transporter substrate-binding protein low > 48
Azospirillum brasilense Sp245 0.44 AZOBR_RS10950 SAM-dependent methyltransferase 0.65 AZOBR_RS19265 sulfate transporter subunit low > 97
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_04795 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.59 OKGIIK_10935 ABC transporter permease low > 52
Azospirillum sp. SherDot2 0.43 MPMX19_00751 50S ribosomal protein L3 glutamine methyltransferase 0.67 MPMX19_04166 Sulfate-binding protein low > 112
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS06350 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.62 QEN71_RS22590 sulfate ABC transporter substrate-binding protein low > 153
Dechlorosoma suillum PS 0.43 Dsui_2712 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 0.64 Dsui_1525 sulfate/thiosulfate-binding protein low > 51
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS10785 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 0.64 HSERO_RS08185 sulfate transporter subunit low > 78
Lysobacter sp. OAE881 0.42 ABIE51_RS08215 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.54 ABIE51_RS01855 sulfate ABC transporter substrate-binding protein low > 62
Paraburkholderia graminis OAS925 0.42 ABIE53_002520 ribosomal protein L3 glutamine methyltransferase 0.62 ABIE53_001990 sulfate/thiosulfate-binding protein low > 113
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS00290 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.62 RALBFv3_RS00035 sulfate ABC transporter substrate-binding protein low > 76
Ralstonia solanacearum UW163 0.42 UW163_RS13620 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.62 UW163_RS13365 sulfate ABC transporter substrate-binding protein
Ralstonia solanacearum GMI1000 0.41 RS_RS06960 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.62 RS_RS06700 sulfate ABC transporter substrate-binding protein low > 80
Ralstonia solanacearum PSI07 0.41 RPSI07_RS17185 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.61 RPSI07_RS17445 sulfate ABC transporter substrate-binding protein low > 81
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS11740 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.63 ABZR87_RS11490 sulfate ABC transporter substrate-binding protein low > 80
Rhodopseudomonas palustris CGA009 0.40 TX73_005990 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.61 TX73_003875 sulfate ABC transporter substrate-binding protein low > 86
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_00596 [LSU ribosomal protein L3P]-glutamine N5-methyltransferase 0.61 H281DRAFT_00778 sulfate transport system substrate-binding protein low > 103
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS12205 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 0.61 BPHYT_RS08790 ABC transporter permease low > 109
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS11955 SAM-dependent methyltransferase 0.58 RR42_RS12295 ABC transporter permease low > 128
Variovorax sp. SCN45 0.36 GFF258 Ribosomal protein L3 N(5)-glutamine methyltransferase (EC 2.1.1.298) 0.60 GFF1247 Sulfate and thiosulfate binding protein CysP low > 127
Variovorax sp. OAS795 0.35 ABID97_RS16650 50S ribosomal protein L3 N(5)-glutamine methyltransferase 0.59 ABID97_RS15465 sulfate ABC transporter substrate-binding protein low > 91
Acidovorax sp. GW101-3H11 0.34 Ac3H11_2299 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.58 Ac3H11_581 Sulfate and thiosulfate binding protein CysP low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF4549 Protein-N(5)-glutamine methyltransferase PrmB, methylates LSU ribosomal protein L3p 0.58 GFF5027 Sulfate and thiosulfate binding protein CysP low > 90

Not shown: 9 genomes with orthologs for HER17_RS06930 only; 9 genomes with orthologs for HER17_RS05670 only