| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas stutzeri RCH2 | 1.0 | Psest_3270 | | probable S-adenosylmethionine-dependent methyltransferase, YraL family | 1.0 | Psest_0725 | | Negative regulator of beta-lactamase expression | 0.23 | 13 |
| Pseudomonas simiae WCS417 | 0.83 | PS417_04590 | | methyltransferase | 0.78 | PS417_03935 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.82 | Pf6N2E2_5346 | | rRNA small subunit methyltransferase I | 0.79 | Pf6N2E2_3344 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.81 | AO356_17110 | | methyltransferase | 0.79 | AO356_07360 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 104 |
| Pseudomonas fluorescens SBW25 | 0.81 | PFLU_RS04655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.79 | PFLU_RS03980 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.81 | PFLU_RS04655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.79 | PFLU_RS03980 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 109 |
| Pseudomonas sp. RS175 | 0.81 | PFR28_03597 | | Ribosomal RNA small subunit methyltransferase I | 0.79 | PFR28_00100 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.81 | AO353_15290 | | methyltransferase | 0.77 | AO353_05510 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 101 |
| Pseudomonas syringae pv. syringae B728a | 0.81 | Psyr_4112 | | Protein of unknown function UPF0011 | 0.77 | Psyr_0817 | | N-acetylmuramoyl-L-alanine amidase, family 2 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.81 | Psyr_4112 | | Protein of unknown function UPF0011 | 0.77 | Psyr_0817 | | N-acetylmuramoyl-L-alanine amidase, family 2 | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.80 | Pf1N1B4_953 | | rRNA small subunit methyltransferase I | 0.77 | Pf1N1B4_1151 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.79 | PfGW456L13_1643 | | rRNA small subunit methyltransferase I | 0.76 | PfGW456L13_5081 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Pseudomonas putida KT2440 | 0.78 | PP_1326 | | 16S rRNA 2'-O-ribose C1402 methyltransferase | 0.68 | PP_0789 | | N-acetyl-anhydromuramyl-L-alanine-amidase | 0.55 | 17 |
| Pseudomonas sp. S08-1 | 0.77 | OH686_08340 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.75 | OH686_16530 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase | low | > 80 |
| Dickeya dadantii 3937 | 0.57 | DDA3937_RS01715 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.55 | DDA3937_RS17945 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 74 |
| Escherichia coli ECRC99 | 0.57 | KEDOAH_09915 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.51 | KEDOAH_17630 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli BL21 | 0.57 | ECD_03013 | | 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent | 0.51 | ECD_00109 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase | low | > 60 |
| Escherichia coli BW25113 | 0.57 | b3146 | yraL | predicted methyltransferase (NCBI) | 0.51 | b0110 | ampD | N-acetyl-anhydromuranmyl-L-alanine amidase (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 0.57 | JDDGAC_21860 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.51 | JDDGAC_14120 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECRC62 | 0.57 | BNILDI_01495 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.51 | BNILDI_08740 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECOR27 | 0.57 | NOLOHH_10035 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.51 | NOLOHH_02870 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 57 |
| Escherichia coli ECRC102 | 0.57 | NIAGMN_15995 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.51 | NIAGMN_08375 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECOR38 | 0.57 | HEPCGN_17110 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.51 | HEPCGN_08505 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 85 |
| Escherichia coli ECRC101 | 0.57 | OKFHMN_18235 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.51 | OKFHMN_10525 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia coli ECRC101 | 0.57 | MCAODC_08755 | rsmI | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.51 | MCAODC_01040 | ampD | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Dickeya dianthicola 67-19 | 0.57 | HGI48_RS01610 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.54 | HGI48_RS17875 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 71 |
| Escherichia coli Nissle 1917 | 0.57 | ECOLIN_RS18085 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.51 | ECOLIN_RS00590 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Escherichia fergusonii Becca | 0.57 | EFB2_00677 | | Ribosomal RNA small subunit methyltransferase I | 0.51 | EFB2_03939 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.57 | OHPLBJKB_00555 | | Ribosomal RNA small subunit methyltransferase I | 0.51 | OHPLBJKB_03551 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 73 |
| Pectobacterium carotovorum WPP14 | 0.57 | HER17_RS19860 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.57 | HER17_RS03260 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 75 |
| Dickeya dianthicola ME23 | 0.56 | DZA65_RS01685 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.54 | DZA65_RS19020 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 75 |
| Marinobacter adhaerens HP15 | 0.56 | HP15_554 | | tetrapyrrole methylase family protein | 0.59 | HP15_1307 | | N-acetyl-anhydromuranmyl-L-alanine amidase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.56 | CSW01_03090 | | rRNA (cytidine-2'-O-)-methyltransferase | 0.52 | CSW01_12260 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 62 |
| Rahnella sp. WP5 | 0.56 | EX31_RS12550 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.54 | EX31_RS03510 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 89 |
| Shewanella loihica PV-4 | 0.56 | Shew_0228 | | uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) | 0.56 | Shew_3434 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | low | > 60 |
| Enterobacter sp. TBS_079 | 0.55 | MPMX20_04050 | | Ribosomal RNA small subunit methyltransferase I | 0.53 | MPMX20_00801 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 85 |
| Enterobacter asburiae PDN3 | 0.55 | EX28DRAFT_3195 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.53 | EX28DRAFT_3703 | | N-acetylmuramoyl-L-alanine amidase | — | — |
| Klebsiella michiganensis M5al | 0.55 | BWI76_RS24910 | | rRNA (cytidine-2'-O-)-methyltransferase | 0.51 | BWI76_RS04850 | | N-acetylmuramoyl-L-alanine amidase | low | > 92 |
| Shewanella amazonensis SB2B | 0.55 | Sama_3353 | | hypothetical protein (RefSeq) | 0.60 | Sama_0372 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | low | > 62 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.55 | GFF1521 | | rRNA small subunit methyltransferase I | 0.51 | GFF129 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | low | > 78 |
| Shewanella oneidensis MR-1 | 0.54 | SO0301 | | hypothetical methyltransferase (NCBI ptt file) | 0.57 | SO0421 | ampD | AmpD protein (NCBI ptt file) | low | > 76 |
| Acinetobacter radioresistens SK82 | 0.53 | MPMX26_02282 | | Ribosomal RNA small subunit methyltransferase I | 0.52 | MPMX26_00043 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 36 |
| Shewanella sp. ANA-3 | 0.53 | Shewana3_3879 | | hypothetical protein (RefSeq) | 0.59 | Shewana3_0423 | | N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) | low | > 73 |
| Serratia liquefaciens MT49 | 0.52 | IAI46_22295 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.48 | IAI46_03535 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 86 |
| Pantoea sp. MT58 | 0.52 | IAI47_02850 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.54 | IAI47_15840 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 76 |
| Kangiella aquimarina DSM 16071 | 0.49 | B158DRAFT_2109 | | probable S-adenosylmethionine-dependent methyltransferase, YraL family | 0.54 | B158DRAFT_2134 | | Negative regulator of beta-lactamase expression | low | > 40 |
| Herbaspirillum seropedicae SmR1 | 0.49 | HSERO_RS23345 | | 16S rRNA methyltransferase | 0.54 | HSERO_RS01880 | | N-acetyl-anhydromuranmyl-L-alanine amidase | low | > 78 |
| Dechlorosoma suillum PS | 0.49 | Dsui_0251 | | putative S-adenosylmethionine-dependent methyltransferase, YraL family | 0.48 | Dsui_0134 | | negative regulator of beta-lactamase expression | low | > 51 |
| Alteromonas macleodii MIT1002 | 0.48 | MIT1002_03113 | | Ribosomal RNA small subunit methyltransferase I | 0.54 | MIT1002_03006 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 70 |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS00655 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.50 | QEN71_RS27225 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.42 | BPHYT_RS01940 | | 16S rRNA methyltransferase | 0.54 | BPHYT_RS17065 | | N-acetyl-anhydromuranmyl-L-alanine amidase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.41 | H281DRAFT_02152 | | 16S rRNA (cytidine1402-2'-O)-methyltransferase | 0.53 | H281DRAFT_06273 | | AmpD protein | low | > 103 |
| Cupriavidus basilensis FW507-4G11 | 0.40 | RR42_RS19740 | | 16S rRNA methyltransferase | 0.55 | RR42_RS17865 | | N-acetyl-anhydromuranmyl-L-alanine amidase | 0.34 | 16 |
| Castellaniella sp019104865 MT123 | 0.40 | ABCV34_RS14320 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.49 | ABCV34_RS09025 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 48 |
| Paraburkholderia graminis OAS925 | 0.38 | ABIE53_000470 | | 16S rRNA (cytidine1402-2'-O)-methyltransferase | 0.53 | ABIE53_003579 | | AmpD protein | 0.56 | 7 |
| Ralstonia solanacearum IBSBF1503 | 0.38 | RALBFv3_RS08495 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.53 | RALBFv3_RS06080 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Ralstonia solanacearum UW163 | 0.38 | UW163_RS05115 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.53 | UW163_RS07545 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Ralstonia sp. UNC404CL21Col | 0.37 | ABZR87_RS03815 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.49 | ABZR87_RS01745 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.37 | RS_RS16360 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.52 | RS_RS14030 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Ralstonia solanacearum PSI07 | 0.37 | RPSI07_RS08730 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.51 | RPSI07_RS11160 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Variovorax sp. OAS795 | 0.35 | ABID97_RS00285 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 0.48 | ABID97_RS06410 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | — | — |
| Acidovorax sp. GW101-3H11 | 0.35 | Ac3H11_4466 | | rRNA small subunit methyltransferase I | 0.42 | Ac3H11_4020 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
| Variovorax sp. SCN45 | 0.34 | GFF3735 | | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) | 0.49 | GFF4433 | | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.33 | GFF2715 | | rRNA small subunit methyltransferase I | 0.51 | GFF594 | | N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) AmpD | — | — |
Not shown: 26 genomes with orthologs for Psest_3270 only; 0 genomes with orthologs for Psest_0725 only