Conservation of cofitness between PS417_24625 and PS417_03005 in Pseudomonas simiae WCS417

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase 1.0 PS417_03005 arginine decarboxylase 0.23 14
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 1.00 PFLU_RS03080 arginine decarboxylase low > 109
Pseudomonas fluorescens SBW25 0.99 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 1.00 PFLU_RS03080 arginine decarboxylase 0.51 85
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase 0.97 AO353_13720 arginine decarboxylase low > 101
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase 0.97 Pf6N2E2_3504 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 103
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase 0.98 Pf1N1B4_1296 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) low > 87
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase 0.97 PfGW456L13_43 Biosynthetic arginine decarboxylase (EC 4.1.1.19) low > 87
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase 0.97 AO356_08155 arginine decarboxylase low > 104
Pseudomonas sp. RS175 0.97 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.97 PFR28_05228 Biosynthetic arginine decarboxylase low > 88
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.95 Psyr_4381 arginine decarboxylase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.95 Psyr_4381 arginine decarboxylase low > 86
Pseudomonas stutzeri RCH2 0.83 Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.86 Psest_3366 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) low > 67
Pseudomonas sp. S08-1 0.83 OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.86 OH686_07545 arginine decarboxylase low > 80
Marinobacter adhaerens HP15 0.73 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.46 HP15_272 biosynthetic arginine decarboxylase low > 73
Kangiella aquimarina DSM 16071 0.71 B158DRAFT_0099 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.42 B158DRAFT_1811 arginine decarboxylase (EC 4.1.1.19) low > 40
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.44 ABZR86_RS15580 biosynthetic arginine decarboxylase — —
Pectobacterium carotovorum WPP14 0.68 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 HER17_RS02665 biosynthetic arginine decarboxylase low > 75
Dickeya dadantii 3937 0.67 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 DDA3937_RS18535 biosynthetic arginine decarboxylase low > 74
Escherichia coli ECRC101 0.67 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 OKFHMN_19305 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECOR38 0.67 HEPCGN_01005 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 HEPCGN_18610 speA biosynthetic arginine decarboxylase 0.83 68
Escherichia coli ECRC98 0.67 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 JDDGAC_22935 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC102 0.67 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 NIAGMN_17070 speA biosynthetic arginine decarboxylase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF4579 tRNA-i(6)A37 methylthiotransferase 0.41 GFF3040 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.63 75
Escherichia coli BL21 0.67 ECD_00629 tRNA-i(6)A37 methylthiotransferase 0.41 ECD_02768 biosynthetic arginine decarboxylase, PLP-binding low > 60
Escherichia coli ECOR27 0.67 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 NOLOHH_11175 speA biosynthetic arginine decarboxylase low > 57
Escherichia coli BW25113 0.67 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) 0.41 b2938 speA arginine decarboxylase (NCBI) low > 76
Dickeya dianthicola 67-19 0.67 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 HGI48_RS18460 biosynthetic arginine decarboxylase low > 71
Escherichia fergusonii Becca 0.67 EFB2_03438 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.41 EFB2_00962 Biosynthetic arginine decarboxylase low > 86
Dickeya dianthicola ME23 0.67 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 DZA65_RS19595 biosynthetic arginine decarboxylase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.41 OHPLBJKB_00778 Biosynthetic arginine decarboxylase low > 73
Escherichia coli ECRC99 0.67 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 KEDOAH_08835 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC101 0.67 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 MCAODC_09825 speA biosynthetic arginine decarboxylase — —
Escherichia coli Nissle 1917 0.67 ECOLIN_RS03555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 ECOLIN_RS16350 biosynthetic arginine decarboxylase — —
Escherichia coli ECRC62 0.67 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 BNILDI_09755 speA biosynthetic arginine decarboxylase — —
Pantoea sp. MT58 0.67 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 IAI47_03660 biosynthetic arginine decarboxylase low > 76
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.45 LRK54_RS09140 arginine decarboxylase — —
Rhodanobacter denitrificans MT42 0.67 LRK55_RS13465 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.45 LRK55_RS08670 arginine decarboxylase — —
Erwinia tracheiphila SCR3 0.67 LU632_RS16305 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 LU632_RS05510 speA biosynthetic arginine decarboxylase low > 74
Shewanella sp. ANA-3 0.66 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.45 Shewana3_1624 arginine decarboxylase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.66 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) 0.46 Sama_1963 arginine decarboxylase (RefSeq) low > 62
Klebsiella michiganensis M5al 0.66 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.40 BWI76_RS24030 arginine decarboxylase — —
Shewanella oneidensis MR-1 0.66 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) 0.45 SO1870 speA biosynthetic arginine decarboxylase (NCBI ptt file) 0.27 68
Alteromonas macleodii MIT1002 0.66 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.34 MIT1002_03905 Biosynthetic arginine decarboxylase low > 70
Xanthomonas campestris pv. campestris strain 8004 0.66 Xcc-8004.2224.1 tRNA-i(6)A37 methylthiotransferase 0.45 Xcc-8004.4909.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) — —
Lysobacter sp. OAE881 0.66 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.44 ABIE51_RS00125 arginine decarboxylase — —
Serratia liquefaciens MT49 0.66 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 IAI46_21140 biosynthetic arginine decarboxylase low > 86
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_02990 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.47 OKGIIK_15625 speA biosynthetic arginine decarboxylase — —
Enterobacter asburiae PDN3 0.65 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.40 EX28DRAFT_2978 arginine decarboxylase (EC 4.1.1.19) low > 76
Shewanella loihica PV-4 0.65 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.44 Shew_1619 arginine decarboxylase (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.65 CSW01_04915 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.44 CSW01_18235 arginine decarboxylase low > 62
Enterobacter sp. TBS_079 0.65 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.40 MPMX20_03799 Biosynthetic arginine decarboxylase low > 85
Rahnella sp. WP5 0.64 EX31_RS23205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.41 EX31_RS21355 biosynthetic arginine decarboxylase low > 89
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_2374 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.37 Synpcc7942_1037 speA arginine decarboxylase — —
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3195 conserved hypothetical protein (NCBI ptt file) 0.38 BT3394 putative arginine decarboxylase (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS01770 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.39 HMPREF1181_RS02535 biosynthetic arginine decarboxylase low > 56
Bacteroides ovatus ATCC 8483 0.33 BACOVA_02895 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.38 BACOVA_01911 arginine 2-monooxygenase low > 94
Desulfovibrio vulgaris Hildenborough JW710 0.32 DVU0984 miaB tRNA-i(6)A37 modification enzyme MiaB (TIGR) 0.36 DVU0417 speA arginine decarboxylase (TIGR) low > 55
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS17135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.38 HMPREF1078_RS15005 biosynthetic arginine decarboxylase low > 61
Phocaeicola vulgatus CL09T03C04 0.31 HMPREF1058_RS11280 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.38 HMPREF1058_RS12110 biosynthetic arginine decarboxylase low > 67
Phocaeicola dorei CL03T12C01 0.31 ABI39_RS05650 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.38 ABI39_RS04690 biosynthetic arginine decarboxylase low > 72
Desulfovibrio vulgaris Miyazaki F 0.31 DvMF_1330 RNA modification enzyme, MiaB family (RefSeq) 0.36 DvMF_1536 arginine decarboxylase (RefSeq) low > 51

Not shown: 41 genomes with orthologs for PS417_24625 only; 1 genomes with orthologs for PS417_03005 only