Conservation of cofitness between PS417_23910 and PS417_27305 in Pseudomonas simiae WCS417

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_23910 3-methyl-2-oxobutanoate hydroxymethyltransferase 1.0 PS417_27305 5-formyltetrahydrofolate cyclo-ligase 0.41 16
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS25750 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.93 PFLU_RS28965 5-formyltetrahydrofolate cyclo-ligase 0.56 7
Pseudomonas fluorescens SBW25 0.98 PFLU_RS25750 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.93 PFLU_RS28965 5-formyltetrahydrofolate cyclo-ligase low > 109
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_14385 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.82 AO353_08780 5-formyltetrahydrofolate cyclo-ligase low > 101
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_16060 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.73 AO356_12990 5-formyltetrahydrofolate cyclo-ligase low > 104
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_2854 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) 0.81 Pf1N1B4_2225 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) low > 87
Pseudomonas fluorescens FW300-N2E2 0.86 Pf6N2E2_5153 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) 0.73 Pf6N2E2_4476 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.49 8
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_1521 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) 0.81 PfGW456L13_892 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.44 3
Pseudomonas sp. RS175 0.85 PFR28_03721 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.75 PFR28_04325 5-formyltetrahydrofolate cyclo-ligase 0.33 50
Pseudomonas putida KT2440 0.85 PP_4699 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.67 PP_5203 5-formyltetrahydrofolate cyclo-ligase 0.44 56
Pseudomonas syringae pv. syringae B728a 0.83 Psyr_0828 ketopantoate hydroxymethyltransferase 0.74 Psyr_0317 5-formyltetrahydrofolate cyclo-ligase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.83 Psyr_0828 ketopantoate hydroxymethyltransferase 0.74 Psyr_0317 5-formyltetrahydrofolate cyclo-ligase low > 86
Pseudomonas sp. S08-1 0.80 OH686_17245 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.57 OH686_11225 5-formyltetrahydrofolate cyclo-ligase — —
Pseudomonas stutzeri RCH2 0.75 Psest_0996 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.64 Psest_0170 5,10-methenyltetrahydrofolate synthetase — —
Marinobacter adhaerens HP15 0.61 HP15_324 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.38 HP15_3211 5-formyltetrahydrofolate cyclo-ligase — —
Shewanella oneidensis MR-1 0.58 SO0870 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI ptt file) 0.32 SO0774 5-formyltetrahydrofolate cyclo-ligase family protein (NCBI ptt file) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_03527 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.31 OHPLBJKB_00804 5-formyltetrahydrofolate cyclo-ligase low > 73
Ralstonia solanacearum IBSBF1503 0.58 RALBFv3_RS05315 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.17 RALBFv3_RS09865 5-formyltetrahydrofolate cyclo-ligase — —
Escherichia coli ECRC62 0.58 BNILDI_08925 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.34 BNILDI_09930 ygfA 5-formyltetrahydrofolate cyclo-ligase — —
Escherichia coli ECOR27 0.58 NOLOHH_02745 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.34 NOLOHH_11395 ygfA 5-formyltetrahydrofolate cyclo-ligase low > 57
Ralstonia solanacearum UW163 0.58 UW163_RS08310 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.17 UW163_RS03715 5-formyltetrahydrofolate cyclo-ligase — —
Shewanella amazonensis SB2B 0.58 Sama_0776 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq) 0.29 Sama_2726 5-formyltetrahydrofolate cyclo-ligase family protein (RefSeq) — —
Shewanella sp. ANA-3 0.57 Shewana3_3408 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq) 0.32 Shewana3_3506 5-formyltetrahydrofolate cyclo-ligase (RefSeq) low > 73
Escherichia coli ECOR38 0.57 HEPCGN_08375 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.34 HEPCGN_18775 ygfA 5-formyltetrahydrofolate cyclo-ligase low > 85
Escherichia coli BW25113 0.57 b0134 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI) 0.31 b2912 ygfA putative ligase (VIMSS) low > 76
Escherichia coli ECRC102 0.57 NIAGMN_08250 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.34 NIAGMN_17250 ygfA 5-formyltetrahydrofolate cyclo-ligase — —
Shewanella loihica PV-4 0.57 Shew_3133 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq) 0.33 Shew_3069 5-formyltetrahydrofolate cyclo-ligase (RefSeq) — —
Escherichia coli BL21 0.57 ECD_00133 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.31 ECD_02743 5-formyltetrahydrofolate cyclo-ligase family protein low > 60
Escherichia coli ECRC98 0.57 JDDGAC_13995 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.34 JDDGAC_23125 ygfA 5-formyltetrahydrofolate cyclo-ligase — —
Escherichia coli ECRC101 0.57 OKFHMN_10400 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.34 OKFHMN_19485 ygfA 5-formyltetrahydrofolate cyclo-ligase — —
Escherichia coli ECRC101 0.57 MCAODC_00915 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.34 MCAODC_10005 ygfA 5-formyltetrahydrofolate cyclo-ligase — —
Escherichia coli Nissle 1917 0.57 ECOLIN_RS00745 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.33 ECOLIN_RS16205 5-formyltetrahydrofolate cyclo-ligase — —
Escherichia fergusonii Becca 0.57 EFB2_03910 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.34 EFB2_00991 5-formyltetrahydrofolate cyclo-ligase low > 86
Enterobacter sp. TBS_079 0.57 MPMX20_00827 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.32 MPMX20_03770 5-formyltetrahydrofolate cyclo-ligase low > 85
Ralstonia solanacearum PSI07 0.57 RPSI07_RS11985 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.17 RPSI07_RS23505 5-formyltetrahydrofolate cyclo-ligase — —
Escherichia coli ECRC99 0.57 KEDOAH_17755 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.34 KEDOAH_08655 ygfA 5-formyltetrahydrofolate cyclo-ligase — —
Klebsiella michiganensis M5al 0.56 BWI76_RS04995 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.30 BWI76_RS23915 5-formyltetrahydrofolate cyclo-ligase low > 92
Ralstonia solanacearum GMI1000 0.56 RS_RS13180 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.16 RS_RS00450 5-formyltetrahydrofolate cyclo-ligase — —
Dickeya dianthicola 67-19 0.56 HGI48_RS16070 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.30 HGI48_RS02370 5-formyltetrahydrofolate cyclo-ligase low > 71
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS26480 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.14 QEN71_RS28640 5-formyltetrahydrofolate cyclo-ligase low > 153
Enterobacter asburiae PDN3 0.56 EX28DRAFT_3730 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.29 EX28DRAFT_2964 5,10-methenyltetrahydrofolate synthetase low > 76
Dickeya dadantii 3937 0.56 DDA3937_RS15955 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.31 DDA3937_RS02410 5-formyltetrahydrofolate cyclo-ligase low > 74
Erwinia tracheiphila SCR3 0.56 LU632_RS20100 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.30 LU632_RS05860 5-formyltetrahydrofolate cyclo-ligase — —
Rahnella sp. WP5 0.56 EX31_RS03280 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.33 EX31_RS21480 5-formyltetrahydrofolate cyclo-ligase low > 89
Dickeya dianthicola ME23 0.56 DZA65_RS17155 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.32 DZA65_RS02475 5-formyltetrahydrofolate cyclo-ligase 0.76 48
Kangiella aquimarina DSM 16071 0.56 B158DRAFT_0061 ketopantoate hydroxymethyltransferase (EC 2.1.2.11) 0.26 B158DRAFT_0528 5-formyltetrahydrofolate cyclo-ligase — —
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_03135 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.32 CSW01_12545 5-formyltetrahydrofolate cyclo-ligase — —
Pectobacterium carotovorum WPP14 0.55 HER17_RS05560 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.36 HER17_RS19095 5-formyltetrahydrofolate cyclo-ligase 0.80 62
Serratia liquefaciens MT49 0.55 IAI46_21240 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.34 IAI46_20895 5-formyltetrahydrofolate cyclo-ligase low > 86
Pantoea sp. MT58 0.55 IAI47_15655 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.31 IAI47_03730 5-formyltetrahydrofolate cyclo-ligase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF91 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) 0.30 GFF3012 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) low > 78
Acinetobacter radioresistens SK82 0.54 MPMX26_00545 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.22 MPMX26_02298 5-formyltetrahydrofolate cyclo-ligase low > 36
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS00950 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.19 ABZR87_RS04880 5-formyltetrahydrofolate cyclo-ligase — —
Dechlorosoma suillum PS 0.52 Dsui_1471 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.14 Dsui_0682 5,10-methenyltetrahydrofolate synthetase — —
Lysobacter sp. OAE881 0.52 ABIE51_RS08025 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.22 ABIE51_RS17355 5-formyltetrahydrofolate cyclo-ligase — —
Xanthomonas campestris pv. campestris strain 8004 0.50 Xcc-8004.3052.1 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) 0.22 Xcc-8004.1138.1 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) — —
Rhodanobacter denitrificans MT42 0.49 LRK55_RS14830 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.26 LRK55_RS11395 5-formyltetrahydrofolate cyclo-ligase low > 63
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS15115 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.26 LRK54_RS11670 5-formyltetrahydrofolate cyclo-ligase — —
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_03885 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.27 OKGIIK_12225 5-formyltetrahydrofolate cyclo-ligase low > 52
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS17250 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.13 RR42_RS01400 5-formyltetrahydrofolate cyclo-ligase — —
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS00815 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.23 ABZR86_RS11995 5-formyltetrahydrofolate cyclo-ligase — —
Desulfovibrio vulgaris Miyazaki F 0.41 DvMF_2949 3-methyl-2-oxobutanoate hydroxymethyltransferase (RefSeq) 0.17 DvMF_2318 5-formyltetrahydrofolate cyclo-ligase (RefSeq) low > 51

Not shown: 20 genomes with orthologs for PS417_23910 only; 7 genomes with orthologs for PS417_27305 only