Conservation of cofitness between PS417_23250 and PS417_25840 in Pseudomonas simiae WCS417

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase 1.0 PS417_25840 SpoVR family protein 0.43 5
Pseudomonas fluorescens SBW25 0.99 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 1.00 PFLU_RS27495 SpoVR family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 1.00 PFLU_RS27495 SpoVR family protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.94 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.93 Pf1N1B4_2521 FIG004684: SpoVR-like protein low > 87
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.92 AO353_07345 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 101
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.93 PfGW456L13_1194 FIG004684: SpoVR-like protein low > 87
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.94 AO356_14305 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 104
Pseudomonas sp. RS175 0.91 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.95 PFR28_04070 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.92 Pf6N2E2_4799 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 103
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1227 Queuosine biosynthesis protein 0.92 Psyr_4633 SpoVR low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1227 Queuosine biosynthesis protein 0.92 Psyr_4633 SpoVR low > 86
Pseudomonas putida KT2440 0.89 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.86 PP_0395 putative type IV piliation protein 0.27 87
Pseudomonas sp. S08-1 0.85 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.87 OH686_15010 SpoVR-like protein low > 80
Pseudomonas stutzeri RCH2 0.85 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.84 Psest_3674 Uncharacterized conserved protein low > 67
Shewanella oneidensis MR-1 0.73 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) 0.67 SO2884 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) 0.43 2
Shewanella sp. ANA-3 0.73 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.67 Shewana3_1636 SpoVR family protein (RefSeq) low > 73
Shewanella loihica PV-4 0.73 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) 0.67 Shew_1831 hypothetical protein (RefSeq) — —
Rahnella sp. WP5 0.72 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.67 EX31_RS10500 SpoVR family protein low > 89
Shewanella amazonensis SB2B 0.72 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.69 Sama_1923 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 62
Serratia liquefaciens MT49 0.72 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.67 IAI46_14470 SpoVR family protein 0.45 85
Vibrio cholerae E7946 ATCC 55056 0.72 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.68 CSW01_09390 SpoVR family protein low > 62
Pantoea sp. MT58 0.71 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.67 IAI47_08885 SpoVR family protein low > 76
Erwinia tracheiphila SCR3 0.71 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.67 LU632_RS13075 SpoVR family protein low > 74
Enterobacter asburiae PDN3 0.71 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.67 EX28DRAFT_0765 Uncharacterized conserved protein low > 76
Dickeya dadantii 3937 0.71 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.68 DDA3937_RS11175 SpoVR family protein 0.40 45
Dickeya dianthicola 67-19 0.71 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.67 HGI48_RS11200 SpoVR family protein low > 71
Dickeya dianthicola ME23 0.71 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.67 DZA65_RS11545 SpoVR family protein low > 75
Escherichia coli ECRC102 0.70 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.67 NIAGMN_27935 ycgB SpoVR family protein — —
Escherichia coli ECRC98 0.70 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.67 JDDGAC_06225 ycgB SpoVR family protein — —
Escherichia coli ECRC62 0.70 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.66 BNILDI_18895 ycgB SpoVR family protein — —
Escherichia coli ECOR27 0.70 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.66 NOLOHH_20730 ycgB SpoVR family protein low > 57
Escherichia coli ECRC101 0.70 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.67 MCAODC_21885 ycgB SpoVR family protein — —
Escherichia coli BW25113 0.70 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) 0.66 b1188 ycgB ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.66 OHPLBJKB_02501 hypothetical protein low > 73
Escherichia coli BL21 0.70 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.66 ECD_01163 SpoVR family stationary phase protein low > 60
Escherichia coli ECRC99 0.70 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.67 KEDOAH_25300 ycgB SpoVR family protein — —
Escherichia coli ECRC101 0.70 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.67 OKFHMN_28285 ycgB SpoVR family protein — —
Klebsiella michiganensis M5al 0.70 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.67 BWI76_RS17740 SpoVR family protein low > 92
Escherichia coli ECOR38 0.70 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.66 HEPCGN_24745 ycgB SpoVR family protein low > 85
Escherichia fergusonii Becca 0.70 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.67 EFB2_02744 hypothetical protein low > 86
Enterobacter sp. TBS_079 0.70 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.67 MPMX20_02700 hypothetical protein low > 85
Pectobacterium carotovorum WPP14 0.70 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.68 HER17_RS11210 SpoVR family protein low > 75
Escherichia coli Nissle 1917 0.70 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.67 ECOLIN_RS07180 SpoVR family protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.67 GFF2805 FIG004684: SpoVR-like protein low > 78
Marinobacter adhaerens HP15 0.65 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.72 HP15_2935 SpoVR family protein low > 73
Alteromonas macleodii MIT1002 0.64 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.67 MIT1002_01231 SpoVR family protein low > 70
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS06170 S-adenosylmethionine tRNA ribosyltransferase 0.66 HSERO_RS21700 SpoVR family protein low > 78
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS01275 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.65 ABZR87_RS14210 SpoVR family protein low > 80
Castellaniella sp019104865 MT123 0.54 ABCV34_RS15370 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.12 ABCV34_RS05550 SpoVR family protein low > 48
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS17395 S-adenosylmethionine tRNA ribosyltransferase 0.67 RR42_RS36475 SpoVR family protein low > 128
Variovorax sp. SCN45 0.50 GFF5535 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) 0.65 GFF2935 FIG004684: SpoVR-like protein low > 127
Acidovorax sp. GW101-3H11 0.49 Ac3H11_778 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.63 Ac3H11_1147 FIG004684: SpoVR-like protein low > 79
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.65 BPHYT_RS11180 SpoVR family protein low > 109
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS26635 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.65 QEN71_RS07385 SpoVR family protein low > 153
Paraburkholderia graminis OAS925 0.49 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.65 ABIE53_002316 stage V sporulation protein R 0.40 112
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.65 H281DRAFT_05234 Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation low > 103
Azospirillum sp. SherDot2 0.44 MPMX19_01696 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.47 MPMX19_02155 hypothetical protein low > 112
Azospirillum brasilense Sp245 0.43 AZOBR_RS06300 S-adenosylmethionine tRNA ribosyltransferase 0.49 AZOBR_RS12645 SpoVR family protein low > 97
Rhizobium sp. OAE497 0.40 ABIE40_RS09430 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.47 ABIE40_RS12540 SpoVR family protein low > 107
Phaeobacter inhibens DSM 17395 0.39 PGA1_c17420 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA 0.48 PGA1_c02490 sporulation protein R-like protein low > 62
Magnetospirillum magneticum AMB-1 0.39 AMB_RS03085 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.50 AMB_RS10895 SpoVR family protein low > 64
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_18125 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.48 CA264_07090 SpoVR family protein — —
Sinorhizobium meliloti 1021 0.38 SMc01207 S-adenosylmethionine--tRNA ribosyltransferase-isomerase 0.50 SMc01265 SpoVR family protein low > 103

Not shown: 37 genomes with orthologs for PS417_23250 only; 0 genomes with orthologs for PS417_25840 only