Conservation of cofitness between PS417_27040 and PS417_23110 in Pseudomonas simiae WCS417

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_27040 3-phosphoglycerate dehydrogenase 1.0 PS417_23110 2-isopropylmalate synthase 0.82 17
Pseudomonas fluorescens SBW25 1.00 PFLU_RS28695 phosphoglycerate dehydrogenase 1.00 PFLU_RS24765 2-isopropylmalate synthase low > 109
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS28695 phosphoglycerate dehydrogenase 1.00 PFLU_RS24765 2-isopropylmalate synthase 0.39 21
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.93 Pf6N2E2_3170 2-isopropylmalate synthase (EC 2.3.3.13) 0.87 8
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_10300 3-phosphoglycerate dehydrogenase 0.93 AO356_06550 2-isopropylmalate synthase 0.88 15
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_08510 3-phosphoglycerate dehydrogenase 0.94 AO353_15925 2-isopropylmalate synthase 0.83 15
Pseudomonas sp. RS175 0.96 PFR28_04842 D-3-phosphoglycerate dehydrogenase 0.93 PFR28_00305 2-isopropylmalate synthase 0.62 9
Pseudomonas fluorescens FW300-N1B4 0.96 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.95 Pf1N1B4_847 2-isopropylmalate synthase (EC 2.3.3.13) 0.83 14
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.89 Psyr_1257 2-isopropylmalate synthase 0.94 5
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.89 Psyr_1257 2-isopropylmalate synthase 0.87 14
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.94 PfGW456L13_4854 2-isopropylmalate synthase (EC 2.3.3.13) 0.84 16
Pseudomonas putida KT2440 0.91 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase 0.91 PP_1025 2-isopropylmalate synthase 0.74 27
Pseudomonas sp. S08-1 0.90 OH686_11280 D-3-phosphoglycerate dehydrogenase 0.77 OH686_17570 2-isopropylmalate synthase low > 80
Pseudomonas stutzeri RCH2 0.89 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases 0.81 Psest_1277 2-isopropylmalate synthase, yeast type — —
Variovorax sp. OAS795 0.80 ABID97_RS07235 phosphoglycerate dehydrogenase 0.59 ABID97_RS14905 2-isopropylmalate synthase low > 91
Acidovorax sp. GW101-3H11 0.79 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.54 Ac3H11_5000 2-isopropylmalate synthase (EC 2.3.3.13) low > 79
Variovorax sp. SCN45 0.78 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.60 GFF1164 2-isopropylmalate synthase (EC 2.3.3.13) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.76 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.61 GFF4280 2-isopropylmalate synthase (EC 2.3.3.13) low > 90
Marinobacter adhaerens HP15 0.75 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein 0.52 HP15_2055 2-isopropylmalate synthase — —
Acinetobacter radioresistens SK82 0.68 MPMX26_02773 D-3-phosphoglycerate dehydrogenase 0.60 MPMX26_00404 2-isopropylmalate synthase low > 36
Shewanella amazonensis SB2B 0.68 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.09 Sama_0335 2-isopropylmalate synthase (RefSeq) 0.86 29
Shewanella sp. ANA-3 0.68 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.09 Shewana3_3761 2-isopropylmalate synthase (RefSeq) 0.86 37
Shewanella oneidensis MR-1 0.67 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) 0.09 SO4236 leuA 2-isopropylmalate synthase (NCBI ptt file) 0.89 7
Shewanella loihica PV-4 0.67 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.09 Shew_3472 2-isopropylmalate synthase (RefSeq) 0.98 5
Alteromonas macleodii MIT1002 0.66 MIT1002_02993 D-3-phosphoglycerate dehydrogenase 0.10 MIT1002_00949 2-isopropylmalate synthase 0.78 63
Klebsiella michiganensis M5al 0.66 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase 0.53 BWI76_RS22105 2-isopropylmalate synthase low > 92
Enterobacter asburiae PDN3 0.66 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases 0.55 EX28DRAFT_2770 2-isopropylmalate synthase, yeast type — —
Serratia liquefaciens MT49 0.66 IAI46_20900 phosphoglycerate dehydrogenase 0.57 IAI46_09630 2-isopropylmalate synthase low > 86
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS09635 phosphoglycerate dehydrogenase 0.09 ABZR86_RS15970 2-isopropylmalate synthase 0.96 2
Rahnella sp. WP5 0.65 EX31_RS21470 phosphoglycerate dehydrogenase 0.56 EX31_RS24130 2-isopropylmalate synthase low > 89
Erwinia tracheiphila SCR3 0.65 LU632_RS05855 serA phosphoglycerate dehydrogenase 0.10 LU632_RS02880 leuA 2-isopropylmalate synthase 0.67 49
Enterobacter sp. TBS_079 0.65 MPMX20_03771 D-3-phosphoglycerate dehydrogenase 0.55 MPMX20_03565 2-isopropylmalate synthase low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase 0.09 OHPLBJKB_03583 2-isopropylmalate synthase low > 73
Escherichia coli BL21 0.65 ECD_02744 D-3-phosphoglycerate dehydrogenase 0.09 ECD_00076 2-isopropylmalate synthase 0.61 43
Pantoea sp. MT58 0.65 IAI47_03725 phosphoglycerate dehydrogenase 0.52 IAI47_10235 2-isopropylmalate synthase low > 76
Escherichia coli ECRC99 0.65 KEDOAH_08680 serA phosphoglycerate dehydrogenase 0.09 KEDOAH_17440 2-isopropylmalate synthase — —
Escherichia coli ECRC62 0.65 BNILDI_09905 serA phosphoglycerate dehydrogenase 0.09 BNILDI_08550 2-isopropylmalate synthase — —
Escherichia coli ECRC101 0.65 MCAODC_09980 serA phosphoglycerate dehydrogenase 0.09 MCAODC_01230 2-isopropylmalate synthase — —
Escherichia coli BW25113 0.65 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) 0.09 b0074 leuA 2-isopropylmalate synthase (NCBI) 0.85 35
Escherichia coli ECRC98 0.65 JDDGAC_23100 serA phosphoglycerate dehydrogenase 0.09 JDDGAC_14310 2-isopropylmalate synthase — —
Escherichia coli ECOR38 0.65 HEPCGN_18760 serA phosphoglycerate dehydrogenase 0.09 HEPCGN_08695 2-isopropylmalate synthase low > 85
Escherichia coli ECOR27 0.65 NOLOHH_11370 serA phosphoglycerate dehydrogenase 0.09 NOLOHH_03060 2-isopropylmalate synthase low > 57
Escherichia coli Nissle 1917 0.65 ECOLIN_RS16210 phosphoglycerate dehydrogenase 0.09 ECOLIN_RS00400 2-isopropylmalate synthase low > 52
Escherichia coli ECRC101 0.65 OKFHMN_19460 serA phosphoglycerate dehydrogenase 0.09 OKFHMN_10715 2-isopropylmalate synthase — —
Escherichia coli ECRC102 0.65 NIAGMN_17225 serA phosphoglycerate dehydrogenase 0.09 NIAGMN_08565 2-isopropylmalate synthase — —
Escherichia fergusonii Becca 0.65 EFB2_00990 D-3-phosphoglycerate dehydrogenase 0.09 EFB2_03971 2-isopropylmalate synthase low > 86
Dickeya dianthicola 67-19 0.65 HGI48_RS18400 phosphoglycerate dehydrogenase 0.10 HGI48_RS18055 2-isopropylmalate synthase 0.73 26
Dickeya dianthicola ME23 0.65 DZA65_RS19540 phosphoglycerate dehydrogenase 0.10 DZA65_RS19200 2-isopropylmalate synthase 0.68 26
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS03185 phosphoglycerate dehydrogenase 0.09 LRK54_RS10345 2-isopropylmalate synthase 0.76 15
Rhodanobacter denitrificans MT42 0.65 LRK55_RS02935 phosphoglycerate dehydrogenase 0.09 LRK55_RS09985 2-isopropylmalate synthase low > 63
Dickeya dadantii 3937 0.65 DDA3937_RS18480 phosphoglycerate dehydrogenase 0.50 DDA3937_RS02895 2-isopropylmalate synthase low > 74
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_10055 serA phosphoglycerate dehydrogenase 0.09 OKGIIK_13575 leuA 2-isopropylmalate synthase low > 52
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_12555 phosphoglycerate dehydrogenase 0.10 CSW01_12595 2-isopropylmalate synthase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.10 Xcc-8004.1056.1 2-isopropylmalate synthase (EC 2.3.3.13) 0.68 62
Pectobacterium carotovorum WPP14 0.64 HER17_RS02725 phosphoglycerate dehydrogenase 0.09 HER17_RS03085 2-isopropylmalate synthase 0.88 28
Lysobacter sp. OAE881 0.62 ABIE51_RS13245 phosphoglycerate dehydrogenase 0.09 ABIE51_RS17570 2-isopropylmalate synthase low > 62
Azospirillum sp. SherDot2 0.59 MPMX19_00753 D-3-phosphoglycerate dehydrogenase 0.56 MPMX19_01822 2-isopropylmalate synthase — —
Rhizobium sp. OAE497 0.58 ABIE40_RS30040 phosphoglycerate dehydrogenase 0.50 ABIE40_RS13330 2-isopropylmalate synthase low > 107
Rhodospirillum rubrum S1H 0.58 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) 0.55 Rru_A1461 2-isopropylmalate synthase (RefSeq) — —
Azospirillum brasilense Sp245 0.58 AZOBR_RS10940 3-phosphoglycerate dehydrogenase 0.55 AZOBR_RS12155 2-isopropylmalate synthase — —
Bosea sp. OAE506 0.54 ABIE41_RS08410 phosphoglycerate dehydrogenase 0.11 ABIE41_RS13000 2-isopropylmalate synthase low > 77
Castellaniella sp019104865 MT123 0.50 ABCV34_RS15150 phosphoglycerate dehydrogenase 0.60 ABCV34_RS12420 2-isopropylmalate synthase — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS27010 D-3-phosphoglycerate dehydrogenase 0.62 RR42_RS21205 2-isopropylmalate synthase low > 128
Bifidobacterium breve UCC2003 0.44 BBR_RS16970 phosphoglycerate dehydrogenase 0.50 BBR_RS11170 2-isopropylmalate synthase low > 34

Not shown: 2 genomes with orthologs for PS417_27040 only; 32 genomes with orthologs for PS417_23110 only