Conservation of cofitness between Psest_0673 and Psest_3793 in Pseudomonas stutzeri RCH2

63 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0673 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 1.0 Psest_3793 D-alanine dehydrogenase (EC 1.4.99.-) (from data) 0.27 14
Pseudomonas sp. S08-1 0.87 OH686_09400 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.88 OH686_13685 D-amino acid dehydrogenase low > 80
Pseudomonas putida KT2440 0.86 PP_0547 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.87 PP_5270 D-amino-acid:quinone oxidoreductase (deaminating) low > 96
Pseudomonas simiae WCS417 0.86 PS417_24800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.87 PS417_27705 amino acid dehydrogenase low > 88
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.86 PFLU_RS29380 D-amino acid dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.86 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.86 PFLU_RS29380 D-amino acid dehydrogenase low > 109
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2676 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.87 Pf1N1B4_2144 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) — —
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_06550 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.87 AO353_09155 amino acid dehydrogenase low > 101
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_4982 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.87 Pf6N2E2_4391 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.87 Psyr_0235 D-amino acid dehydrogenase small subunit low > 86
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_1344 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.87 PfGW456L13_812 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 87
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_0630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.87 Psyr_0235 D-amino acid dehydrogenase small subunit low > 86
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_15235 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.87 AO356_12620 amino acid dehydrogenase low > 104
Pseudomonas sp. RS175 0.84 PFR28_03883 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.88 PFR28_04399 D-amino acid dehydrogenase 1 low > 88
Vibrio cholerae E7946 ATCC 55056 0.65 CSW01_12875 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.56 CSW01_04065 D-amino acid dehydrogenase small subunit low > 62
Acinetobacter radioresistens SK82 0.62 MPMX26_03053 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.63 MPMX26_01248 D-amino acid dehydrogenase low > 36
Marinobacter adhaerens HP15 0.62 HP15_616 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.38 HP15_2610 D-amino acid dehydrogenase small subunit low > 73
Dechlorosoma suillum PS 0.62 Dsui_0384 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.41 Dsui_0501 glycine/D-amino acid oxidase, deaminating — —
Ralstonia solanacearum UW163 0.61 UW163_RS07655 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.64 UW163_RS15940 D-amino acid dehydrogenase small subunit — —
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS05970 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.64 RALBFv3_RS13870 D-amino acid dehydrogenase small subunit low > 76
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS01630 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.64 ABZR87_RS09560 D-amino acid dehydrogenase low > 80
Ralstonia solanacearum PSI07 0.61 RPSI07_RS11275 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.64 RPSI07_RS19600 D-amino acid dehydrogenase small subunit low > 81
Ralstonia solanacearum GMI1000 0.61 RS_RS13915 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.64 RS_RS04605 D-amino acid dehydrogenase small subunit low > 80
Serratia liquefaciens MT49 0.61 IAI46_01800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.64 IAI46_14460 D-amino acid dehydrogenase low > 86
Herbaspirillum seropedicae SmR1 0.61 HSERO_RS01965 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.66 HSERO_RS08375 D-amino acid dehydrogenase small subunit low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_03802 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.62 OHPLBJKB_02500 D-amino acid dehydrogenase low > 73
Escherichia coli ECRC101 0.60 OKFHMN_11940 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.62 OKFHMN_28290 dadA D-amino acid dehydrogenase — —
Escherichia coli ECRC101 0.60 MCAODC_02445 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.62 MCAODC_21880 dadA D-amino acid dehydrogenase — —
Escherichia coli ECRC98 0.60 JDDGAC_15580 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.62 JDDGAC_06220 dadA D-amino acid dehydrogenase — —
Escherichia coli ECRC62 0.60 BNILDI_07315 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.62 BNILDI_18890 dadA D-amino acid dehydrogenase — —
Escherichia fergusonii Becca 0.60 EFB2_04300 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.62 EFB2_02743 D-amino acid dehydrogenase low > 86
Escherichia coli BL21 0.60 ECD_04101 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.62 ECD_01164 D-amino acid dehydrogenase low > 60
Escherichia coli ECOR27 0.60 NOLOHH_04200 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.62 NOLOHH_20725 dadA D-amino acid dehydrogenase low > 57
Escherichia coli ECOR38 0.60 HEPCGN_10140 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.62 HEPCGN_24750 dadA D-amino acid dehydrogenase low > 85
Escherichia coli ECRC99 0.60 KEDOAH_16215 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.62 KEDOAH_25305 dadA D-amino acid dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS27145 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.63 QEN71_RS04190 D-amino acid dehydrogenase low > 153
Escherichia coli Nissle 1917 0.60 ECOLIN_RS24560 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.62 ECOLIN_RS07185 D-amino acid dehydrogenase — —
Escherichia coli BW25113 0.60 b4233 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) 0.62 b1189 dadA D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) low > 76
Escherichia coli ECRC102 0.60 NIAGMN_09790 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase 0.62 NIAGMN_27930 dadA D-amino acid dehydrogenase — —
Klebsiella michiganensis M5al 0.60 BWI76_RS02820 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.62 BWI76_RS17735 D-amino acid dehydrogenase small subunit low > 92
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS17675 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.63 RR42_RS04585 amino acid dehydrogenase low > 128
Erwinia tracheiphila SCR3 0.60 LU632_RS02135 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.61 LU632_RS13070 D-amino acid dehydrogenase low > 74
Enterobacter asburiae PDN3 0.60 EX28DRAFT_3420 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.62 EX28DRAFT_0766 Glycine/D-amino acid oxidases (deaminating) low > 76
Pantoea sp. MT58 0.60 IAI47_02755 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.65 IAI47_08890 D-amino acid dehydrogenase low > 76
Enterobacter sp. TBS_079 0.59 MPMX20_00515 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase 0.62 MPMX20_02699 D-amino acid dehydrogenase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF881 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.62 GFF2804 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 78
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_06288 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.63 H281DRAFT_04287 D-amino-acid dehydrogenase low > 103
Paraburkholderia graminis OAS925 0.59 ABIE53_003563 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 0.63 ABIE53_003133 D-amino-acid dehydrogenase low > 113
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS16990 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.63 BPHYT_RS14790 D-amino acid dehydrogenase low > 109
Dickeya dadantii 3937 0.59 DDA3937_RS18580 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.61 DDA3937_RS11170 D-amino acid dehydrogenase low > 74
Pectobacterium carotovorum WPP14 0.59 HER17_RS02615 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.62 HER17_RS11170 D-amino acid dehydrogenase low > 75
Dickeya dianthicola 67-19 0.58 HGI48_RS18515 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.61 HGI48_RS11195 D-amino acid dehydrogenase low > 71
Dickeya dianthicola ME23 0.58 DZA65_RS19650 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.61 DZA65_RS11540 D-amino acid dehydrogenase low > 75
Rahnella sp. WP5 0.58 EX31_RS08665 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.63 EX31_RS10485 D-amino acid dehydrogenase low > 89
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS17365 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.17 ABZR86_RS08930 FAD-dependent oxidoreductase — —
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS06610 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.76 LRK54_RS00590 D-amino acid dehydrogenase low > 59
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_17020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase 0.76 OKGIIK_06665 dadA D-amino acid dehydrogenase small subunit low > 52
Rhodanobacter denitrificans MT42 0.55 LRK55_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.76 LRK55_RS00360 D-amino acid dehydrogenase low > 63
Variovorax sp. SCN45 0.55 GFF4445 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase (EC 6.3.2.-) 0.64 GFF1773 D-amino acid dehydrogenase (EC 1.4.99.6) low > 127
Castellaniella sp019104865 MT123 0.55 ABCV34_RS10690 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.58 ABCV34_RS10810 D-amino acid dehydrogenase low > 48
Variovorax sp. OAS795 0.55 ABID97_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.66 ABID97_RS22385 D-amino acid dehydrogenase low > 91
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1107.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) 0.68 Xcc-8004.4621.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 74
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF583 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.34 GFF1973 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) — —
Acidovorax sp. GW101-3H11 0.48 Ac3H11_4032 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) 0.39 Ac3H11_832 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) low > 79

Not shown: 9 genomes with orthologs for Psest_0673 only; 14 genomes with orthologs for Psest_3793 only