Conservation of cofitness between PS417_27040 and PS417_18600 in Pseudomonas simiae WCS417

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_27040 3-phosphoglycerate dehydrogenase 1.0 PS417_18600 isopropylmalate isomerase 0.82 16
Pseudomonas fluorescens SBW25 1.00 PFLU_RS28695 phosphoglycerate dehydrogenase 0.99 PFLU_RS20580 3-isopropylmalate dehydratase large subunit low > 109
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS28695 phosphoglycerate dehydrogenase 0.99 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.36 33
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_3932 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.94 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.84 12
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_10300 3-phosphoglycerate dehydrogenase 0.94 AO356_21400 isopropylmalate isomerase 0.88 14
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_08510 3-phosphoglycerate dehydrogenase 0.94 AO353_20620 isopropylmalate isomerase 0.84 11
Pseudomonas fluorescens FW300-N1B4 0.96 Pf1N1B4_2272 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.94 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.83 15
Pseudomonas sp. RS175 0.96 PFR28_04842 D-3-phosphoglycerate dehydrogenase 0.93 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.62 8
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.92 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.90 10
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4852 D-3-phosphoglycerate dehydrogenase 0.92 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.92 8
Pseudomonas fluorescens GW456-L13 0.94 PfGW456L13_943 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.94 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.85 14
Pseudomonas putida KT2440 0.91 PP_5155 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase 0.90 PP_1985 3-isopropylmalate dehydratase large subunit 0.77 12
Pseudomonas sp. S08-1 0.90 OH686_11280 D-3-phosphoglycerate dehydrogenase 0.88 OH686_04480 3-isopropylmalate dehydratase large subunit low > 80
Pseudomonas stutzeri RCH2 0.89 Psest_3873 Phosphoglycerate dehydrogenase and related dehydrogenases 0.86 Psest_2591 3-isopropylmalate dehydratase, large subunit — —
Variovorax sp. OAS795 0.80 ABID97_RS07235 phosphoglycerate dehydrogenase 0.70 ABID97_RS08465 3-isopropylmalate dehydratase large subunit — —
Acidovorax sp. GW101-3H11 0.79 Ac3H11_4790 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.69 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 79
Variovorax sp. SCN45 0.78 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.70 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.76 GFF149 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.69 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 90
Marinobacter adhaerens HP15 0.75 HP15_2554 D-3-phosphoglycerate dehydrogenase-like protein 0.78 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain — —
Acinetobacter radioresistens SK82 0.68 MPMX26_02773 D-3-phosphoglycerate dehydrogenase 0.74 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.85 34
Shewanella amazonensis SB2B 0.68 Sama_2949 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.59 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.86 34
Shewanella sp. ANA-3 0.68 Shewana3_3416 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.59 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.87 25
Shewanella oneidensis MR-1 0.67 SO0862 serA D-3-phosphoglycerate dehydrogenase (NCBI ptt file) 0.59 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.89 17
Shewanella loihica PV-4 0.67 Shew_3196 D-3-phosphoglycerate dehydrogenase (RefSeq) 0.59 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.98 10
Alteromonas macleodii MIT1002 0.66 MIT1002_02993 D-3-phosphoglycerate dehydrogenase 0.58 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.84 37
Klebsiella michiganensis M5al 0.66 BWI76_RS23920 D-3-phosphoglycerate dehydrogenase 0.60 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.80 26
Enterobacter asburiae PDN3 0.66 EX28DRAFT_2965 Phosphoglycerate dehydrogenase and related dehydrogenases 0.61 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit — —
Serratia liquefaciens MT49 0.66 IAI46_20900 phosphoglycerate dehydrogenase 0.59 IAI46_03345 3-isopropylmalate dehydratase large subunit low > 86
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS09635 phosphoglycerate dehydrogenase 0.49 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.93 26
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF3013 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.60 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 78
Rahnella sp. WP5 0.65 EX31_RS21470 phosphoglycerate dehydrogenase 0.62 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.81 32
Erwinia tracheiphila SCR3 0.65 LU632_RS05855 serA phosphoglycerate dehydrogenase 0.57 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.59 69
Enterobacter sp. TBS_079 0.65 MPMX20_03771 D-3-phosphoglycerate dehydrogenase 0.60 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.86 29
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_0518 Phosphoglycerate dehydrogenase and related dehydrogenases 0.78 B158DRAFT_1319 3-isopropylmalate dehydratase, large subunit low > 40
Escherichia coli ECOR38 0.65 HEPCGN_18760 serA phosphoglycerate dehydrogenase 0.61 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 85
Escherichia coli ECRC102 0.65 NIAGMN_17225 serA phosphoglycerate dehydrogenase 0.61 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1 — —
Escherichia coli ECRC101 0.65 OKFHMN_19460 serA phosphoglycerate dehydrogenase 0.61 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 — —
Escherichia coli BL21 0.65 ECD_02744 D-3-phosphoglycerate dehydrogenase 0.61 ECD_00074 3-isopropylmalate dehydratase large subunit 0.67 32
Escherichia coli ECRC98 0.65 JDDGAC_23100 serA phosphoglycerate dehydrogenase 0.61 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 — —
Pantoea sp. MT58 0.65 IAI47_03725 phosphoglycerate dehydrogenase 0.61 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.91 8
Escherichia coli ECOR27 0.65 NOLOHH_11370 serA phosphoglycerate dehydrogenase 0.61 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 57
Escherichia coli ECRC62 0.65 BNILDI_09905 serA phosphoglycerate dehydrogenase 0.61 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 — —
Escherichia coli Nissle 1917 0.65 ECOLIN_RS16210 phosphoglycerate dehydrogenase 0.61 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit low > 52
Escherichia fergusonii Becca 0.65 EFB2_00990 D-3-phosphoglycerate dehydrogenase 0.61 EFB2_03973 3-isopropylmalate dehydratase large subunit low > 86
Escherichia coli BW25113 0.65 b2913 serA D-3-phosphoglycerate dehydrogenase (NCBI) 0.61 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.86 28
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_00803 D-3-phosphoglycerate dehydrogenase 0.61 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit low > 73
Escherichia coli ECRC101 0.65 MCAODC_09980 serA phosphoglycerate dehydrogenase 0.61 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 — —
Escherichia coli ECRC99 0.65 KEDOAH_08680 serA phosphoglycerate dehydrogenase 0.61 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1 — —
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS03185 phosphoglycerate dehydrogenase 0.60 LRK54_RS07375 3-isopropylmalate dehydratase large subunit low > 59
Dickeya dianthicola ME23 0.65 DZA65_RS19540 phosphoglycerate dehydrogenase 0.62 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.75 12
Dickeya dianthicola 67-19 0.65 HGI48_RS18400 phosphoglycerate dehydrogenase 0.62 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.81 9
Rhodanobacter denitrificans MT42 0.65 LRK55_RS02935 phosphoglycerate dehydrogenase 0.60 LRK55_RS07105 3-isopropylmalate dehydratase large subunit low > 63
Dickeya dadantii 3937 0.65 DDA3937_RS18480 phosphoglycerate dehydrogenase 0.62 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.89 5
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_10055 serA phosphoglycerate dehydrogenase 0.48 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit low > 52
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_12555 phosphoglycerate dehydrogenase 0.59 CSW01_12605 3-isopropylmalate dehydratase large subunit low > 62
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.2931.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.86 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.82 12
Pectobacterium carotovorum WPP14 0.64 HER17_RS02725 phosphoglycerate dehydrogenase 0.62 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.90 22
Lysobacter sp. OAE881 0.62 ABIE51_RS13245 phosphoglycerate dehydrogenase 0.47 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.89 33
Azospirillum sp. SherDot2 0.59 MPMX19_00753 D-3-phosphoglycerate dehydrogenase 0.67 MPMX19_01998 3-isopropylmalate dehydratase large subunit — —
Rhizobium sp. OAE497 0.58 ABIE40_RS30040 phosphoglycerate dehydrogenase 0.62 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit low > 107
Rhodospirillum rubrum S1H 0.58 Rru_A2456 Phosphoglycerate dehydrogenase (NCBI) 0.68 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) — —
Azospirillum brasilense Sp245 0.58 AZOBR_RS10940 3-phosphoglycerate dehydrogenase 0.67 AZOBR_RS03545 isopropylmalate isomerase — —
Bosea sp. OAE506 0.54 ABIE41_RS08410 phosphoglycerate dehydrogenase 0.65 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit — —
Castellaniella sp019104865 MT123 0.50 ABCV34_RS15150 phosphoglycerate dehydrogenase 0.72 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit — —
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS27010 D-3-phosphoglycerate dehydrogenase 0.73 RR42_RS14400 isopropylmalate isomerase low > 128
Bifidobacterium breve UCC2003 0.44 BBR_RS16970 phosphoglycerate dehydrogenase 0.55 BBR_RS19630 3-isopropylmalate dehydratase large subunit low > 34

Not shown: 0 genomes with orthologs for PS417_27040 only; 35 genomes with orthologs for PS417_18600 only