Conservation of cofitness between GFF5146 and GFF3357 in Hydrogenophaga sp. GW460-11-11-14-LB1

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF5146 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) 1.0 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.84 3
Variovorax sp. SCN45 0.84 GFF553 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) 0.62 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) low > 127
Variovorax sp. OAS795 0.81 ABID97_RS17860 peptidylprolyl isomerase 0.61 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA low > 91
Dechlorosoma suillum PS 0.72 Dsui_3088 peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 0.56 Dsui_3194 pseudouridylate synthase I low > 51
Paraburkholderia sabiae LMG 24235 0.70 QEN71_RS06115 peptidylprolyl isomerase 0.53 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA low > 153
Burkholderia phytofirmans PsJN 0.70 BPHYT_RS12445 cyclophilin 0.54 BPHYT_RS33885 tRNA pseudouridine synthase A — —
Paraburkholderia bryophila 376MFSha3.1 0.70 H281DRAFT_00543 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) 0.54 H281DRAFT_06069 tRNA pseudouridine38-40 synthase low > 103
Paraburkholderia graminis OAS925 0.70 ABIE53_002710 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) 0.54 ABIE53_004807 tRNA pseudouridine38-40 synthase low > 113
Cupriavidus basilensis FW507-4G11 0.70 RR42_RS06335 cyclophilin 0.45 RR42_RS14370 tRNA pseudouridine synthase A — —
Acidovorax sp. GW101-3H11 0.69 Ac3H11_41 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) 0.73 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.43 26
Ralstonia solanacearum GMI1000 0.68 RS_RS05800 cyclophilin 0.49 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum PSI07 0.67 RPSI07_RS18390 cyclophilin 0.49 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS10630 peptidylprolyl isomerase 0.48 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA low > 80
Ralstonia solanacearum UW163 0.66 UW163_RS12455 cyclophilin 0.50 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum IBSBF1503 0.66 RALBFv3_RS14985 cyclophilin 0.50 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA — —
Castellaniella sp019104865 MT123 0.66 ABCV34_RS00375 peptidylprolyl isomerase 0.52 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA low > 48
Pseudomonas putida KT2440 0.65 PP_2903 peptidyl-prolyl cis-trans isomerase B (rotamase B) 0.47 PP_1994 tRNA pseudouridine (38-40)synthase low > 96
Herbaspirillum seropedicae SmR1 0.63 HSERO_RS09310 cyclophilin 0.49 HSERO_RS16485 tRNA pseudouridine synthase A — —
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_27825 peptidylprolyl isomerase 0.44 AO353_20660 pseudouridine synthase low > 101
Pseudomonas sp. S08-1 0.61 OH686_03750 Peptidyl-prolyl cis-trans isomerase PpiB 0.44 OH686_04450 tRNA pseudouridine(38-40) synthase low > 80
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_2608 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) 0.46 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas stutzeri RCH2 0.61 Psest_2304 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 0.41 Psest_2585 pseudouridylate synthase I low > 67
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_01015 peptidylprolyl isomerase 0.45 AO356_21435 pseudouridine synthase low > 104
Pseudomonas simiae WCS417 0.61 PS417_16900 peptidylprolyl isomerase 0.44 PS417_18565 pseudouridine synthase — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_151 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) 0.45 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Desulfovibrio vulgaris Hildenborough JW710 0.61 DVU1873 ppiB-2 peptidyl-prolyl cis-trans isomerase B (TIGR) 0.20 DVU0911 truA tRNA pseudouridine synthase A (TIGR) low > 55
Rahnella sp. WP5 0.60 EX31_RS22640 peptidylprolyl isomerase B 0.47 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA — —
Pseudomonas fluorescens SBW25 0.60 PFLU_RS18885 peptidyl-prolyl cis-trans isomerase 0.45 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25-INTG 0.60 PFLU_RS18885 peptidyl-prolyl cis-trans isomerase 0.45 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_4004 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) 0.46 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_1733 Peptidyl-prolyl cis-trans isomerase, cyclophilin type 0.45 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_1733 Peptidyl-prolyl cis-trans isomerase, cyclophilin type 0.45 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas sp. RS175 0.59 PFR28_02745 Peptidyl-prolyl cis-trans isomerase cyp18 0.44 PFR28_02817 tRNA pseudouridine synthase A low > 88
Acinetobacter radioresistens SK82 0.59 MPMX26_01727 Peptidyl-prolyl cis-trans isomerase cyp18 0.38 MPMX26_00352 tRNA pseudouridine synthase A 0.78 4
Shewanella sp. ANA-3 0.59 Shewana3_2665 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) 0.44 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_03156 Peptidyl-prolyl cis-trans isomerase B 0.44 OHPLBJKB_01387 tRNA pseudouridine synthase A — —
Escherichia coli ECRC101 0.58 OKFHMN_07825 ppiB peptidylprolyl isomerase B 0.45 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC99 0.58 KEDOAH_20145 ppiB peptidylprolyl isomerase B 0.45 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.58 MCAODC_27045 ppiB peptidylprolyl isomerase B 0.45 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli BW25113 0.58 b0525 ppiB peptidyl-prolyl cis-trans isomerase B (rotamase B) (NCBI) 0.44 b2318 truA tRNA pseudouridine synthase A (NCBI) — —
Escherichia coli ECOR27 0.58 NOLOHH_00815 ppiB peptidylprolyl isomerase B 0.44 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECRC62 0.58 BNILDI_22245 ppiB peptidylprolyl isomerase B 0.45 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECRC98 0.58 JDDGAC_11475 ppiB peptidylprolyl isomerase B 0.45 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Escherichia fergusonii Becca 0.58 EFB2_03536 Peptidyl-prolyl cis-trans isomerase B 0.44 EFB2_01540 tRNA pseudouridine synthase A — —
Escherichia coli Nissle 1917 0.58 ECOLIN_RS03045 peptidylprolyl isomerase B 0.45 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECRC102 0.58 NIAGMN_05880 ppiB peptidylprolyl isomerase B 0.45 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli BL21 0.58 ECD_00475 peptidyl-prolyl cis-trans isomerase B (rotamase B) 0.44 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Escherichia coli ECOR38 0.58 HEPCGN_06465 ppiB peptidylprolyl isomerase B 0.45 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase — —
Pantoea sp. MT58 0.58 IAI47_14340 peptidylprolyl isomerase B 0.44 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA — —
Alteromonas macleodii MIT1002 0.58 MIT1002_02501 Peptidyl-prolyl cis-trans isomerase B 0.42 MIT1002_02529 tRNA pseudouridine synthase A low > 70
Serratia liquefaciens MT49 0.58 IAI46_05385 peptidylprolyl isomerase B 0.43 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA 0.56 23
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF4441 Peptidyl-prolyl cis-trans isomerase PpiB (EC 5.2.1.8) 0.45 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Klebsiella michiganensis M5al 0.57 BWI76_RS07085 peptidyl-prolyl cis-trans isomerase 0.46 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA — —
Pectobacterium carotovorum WPP14 0.57 HER17_RS06485 peptidylprolyl isomerase B 0.43 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA — —
Enterobacter asburiae PDN3 0.57 EX28DRAFT_2455 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 0.45 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase — —
Erwinia tracheiphila SCR3 0.57 LU632_RS15235 ppiB peptidylprolyl isomerase B 0.44 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA — —
Shewanella loihica PV-4 0.57 Shew_2512 peptidylprolyl isomerase (RefSeq) 0.42 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Enterobacter sp. TBS_079 0.57 MPMX20_01101 Peptidyl-prolyl cis-trans isomerase B 0.45 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Dickeya dianthicola ME23 0.56 DZA65_RS15980 peptidylprolyl isomerase B 0.43 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA — —
Marinobacter adhaerens HP15 0.56 HP15_2190 peptidyl-prolyl cis-trans isomerase B 0.45 HP15_1829 tRNA pseudouridine synthase A low > 73
Dickeya dadantii 3937 0.56 DDA3937_RS15095 peptidylprolyl isomerase B 0.43 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA — —
Dickeya dianthicola 67-19 0.56 HGI48_RS15175 peptidylprolyl isomerase B 0.43 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1021 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 0.41 B158DRAFT_1483 pseudouridylate synthase I low > 40
Shewanella amazonensis SB2B 0.54 Sama_1220 peptidyl-prolyl cis-trans isomerase B (RefSeq) 0.44 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_09260 peptidylprolyl isomerase 0.43 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA low > 62

Not shown: 3 genomes with orthologs for GFF5146 only; 35 genomes with orthologs for GFF3357 only