Conservation of cofitness between GFF1891 and GFF3339 in Hydrogenophaga sp. GW460-11-11-14-LB1

62 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF1891 FIG011065: hypothetical protein 1.0 GFF3339 RNA polymerase sigma factor RpoE 0.71 1
Acidovorax sp. GW101-3H11 0.70 Ac3H11_3324 FIG011065: hypothetical protein 0.75 Ac3H11_1573 RNA polymerase sigma factor RpoE — —
Variovorax sp. SCN45 0.66 GFF5022 FIG011065: hypothetical protein 0.72 GFF3863 RNA polymerase sigma factor RpoE low > 127
Variovorax sp. OAS795 0.66 ABID97_RS04095 TSUP family transporter 0.74 ABID97_RS08330 RNA polymerase sigma factor RpoE low > 91
Ralstonia solanacearum GMI1000 0.55 RS_RS16720 membrane protein 0.56 RS_RS05225 RNA polymerase sigma factor RpoE low > 80
Ralstonia solanacearum PSI07 0.54 RPSI07_RS08365 membrane protein 0.56 RPSI07_RS19015 RNA polymerase sigma factor RpoE low > 81
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS04180 TSUP family transporter 0.56 ABZR87_RS10165 RNA polymerase sigma factor RpoE low > 80
Ralstonia solanacearum UW163 0.50 UW163_RS04705 membrane protein 0.56 UW163_RS11910 RNA polymerase sigma factor RpoE — —
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS23970 membrane protein 0.56 HSERO_RS09625 RNA polymerase sigma factor RpoE — —
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS20255 membrane protein 0.56 RR42_RS14080 RNA polymerase sigma factor RpoE low > 128
Pseudomonas putida KT2440 0.45 PP_3933 conserved membrane protein of unknown function 0.48 PP_1427 RNA polymerase sigma E factor low > 96
Dechlorosoma suillum PS 0.41 Dsui_3484 putative permease 0.54 Dsui_2453 RNA polymerase sigma factor RpoE — —
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_96 FIG011065: hypothetical protein 0.48 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT low > 103
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_28075 hypothetical protein 0.48 AO353_17625 RNA polymerase subunit sigma low > 101
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS10460 hypothetical protein 0.23 CA265_RS15190 RNA polymerase sigma factor low > 88
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_4116 FIG011065: hypothetical protein 0.48 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_18905 hypothetical protein 0.23 CA264_00665 RNA polymerase subunit sigma-24 low > 74
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.5298.1 FIG011065: hypothetical protein 0.50 Xcc-8004.3681.1 RNA polymerase sigma factor RpoE low > 74
Dickeya dadantii 3937 0.32 DDA3937_RS14570 TSUP family transporter 0.47 DDA3937_RS15765 RNA polymerase sigma factor RpoE low > 74
Rahnella sp. WP5 0.30 EX31_RS19675 TSUP family transporter 0.48 EX31_RS21800 RNA polymerase sigma factor RpoE — —
Pantoea sp. MT58 0.29 IAI47_06160 TSUP family transporter 0.48 IAI47_04850 RNA polymerase sigma factor RpoE — —
Dickeya dianthicola ME23 0.29 DZA65_RS15455 TSUP family transporter 0.47 DZA65_RS16930 RNA polymerase sigma factor RpoE low > 75
Erwinia tracheiphila SCR3 0.29 LU632_RS07785 sulfite exporter TauE/SafE family protein 0.49 LU632_RS15425 rpoE RNA polymerase sigma factor RpoE low > 74
Dickeya dianthicola 67-19 0.29 HGI48_RS14520 TSUP family transporter 0.47 HGI48_RS15850 RNA polymerase sigma factor RpoE low > 71
Serratia liquefaciens MT49 0.29 IAI46_18015 TSUP family transporter 0.48 IAI46_19585 RNA polymerase sigma factor RpoE — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF1948 Putative membrane protein YfcA 0.48 GFF2107 RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC101 0.28 MCAODC_13665 yfcA putative membrane transporter protein YfcA 0.48 MCAODC_11905 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECOR27 0.28 NOLOHH_14260 yfcA putative membrane transporter protein YfcA 0.48 NOLOHH_13050 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli BL21 0.28 ECD_02252 TauE/TSUP family inner membrane protein 0.48 ECD_02467 RNA polymerase sigma E factor — —
Escherichia coli Nissle 1917 0.28 ECOLIN_RS13480 sulfite exporter TauE/SafE family protein 0.48 ECOLIN_RS14560 RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC102 0.28 NIAGMN_20400 yfcA putative membrane transporter protein YfcA 0.48 NIAGMN_19145 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC99 0.28 KEDOAH_05570 yfcA putative membrane transporter protein YfcA 0.48 KEDOAH_06845 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC98 0.28 JDDGAC_26585 yfcA putative membrane transporter protein YfcA 0.48 JDDGAC_25040 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC100 0.28 OKFHMN_22625 yfcA putative membrane transporter protein YfcA 0.48 OKFHMN_21375 rpoE RNA polymerase sigma factor RpoE — —
Escherichia coli BW25113 0.28 b2327 yfcA conserved inner membrane protein (NCBI) 0.48 b2573 rpoE RNA polymerase, sigma 24 (sigma E) factor (NCBI) — —
Escherichia coli ECOR38 0.28 HEPCGN_21830 yfcA putative membrane transporter protein YfcA 0.48 HEPCGN_20520 rpoE RNA polymerase sigma factor RpoE — —
Escherichia fergusonii Becca 0.28 EFB2_01531 putative membrane transporter protein YfcA 0.48 EFB2_01323 ECF RNA polymerase sigma-E factor — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_01378 putative membrane transporter protein YfcA 0.48 OHPLBJKB_01134 ECF RNA polymerase sigma-E factor — —
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_4150 Predicted permeases 0.19 Ga0059261_2952 RNA polymerase sigma factor, sigma-70 family low > 68
Pectobacterium carotovorum WPP14 0.28 HER17_RS06945 sulfite exporter TauE/SafE family protein 0.48 HER17_RS05780 RNA polymerase sigma factor RpoE — —
Escherichia coli ECRC62 0.28 BNILDI_13180 yfcA putative membrane transporter protein YfcA 0.48 BNILDI_11850 rpoE RNA polymerase sigma factor RpoE — —
Lysobacter sp. OAE881 0.28 ABIE51_RS11860 TSUP family transporter 0.50 ABIE51_RS13890 RNA polymerase sigma factor RpoE low > 62
Enterobacter sp. TBS_079 0.28 MPMX20_03262 putative membrane transporter protein YfcA 0.48 MPMX20_03444 ECF RNA polymerase sigma-E factor — —
Enterobacter asburiae PDN3 0.27 EX28DRAFT_0277 Predicted permeases 0.48 EX28DRAFT_0072 RNA polymerase sigma factor RpoE — —
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_369 Putative membrane protein YfcA 0.48 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT low > 87
Klebsiella michiganensis M5al 0.27 BWI76_RS20425 hypothetical protein 0.48 BWI76_RS21355 RNA polymerase sigma factor RpoE — —
Fusobacterium nucleatum SB010 0.27 HUW76_01290 TSUP family transporter 0.17 HUW76_07635 RNA polymerase sigma factor — —
Castellaniella sp019104865 MT123 0.26 ABCV34_RS12215 TSUP family transporter 0.55 ABCV34_RS08355 RNA polymerase sigma factor RpoE low > 48
Shewanella amazonensis SB2B 0.26 Sama_1266 hypothetical protein (RefSeq) 0.42 Sama_0874 RNA polymerase sigma factor RpoE (RefSeq) low > 62
Shewanella sp. ANA-3 0.25 Shewana3_2613 hypothetical protein (RefSeq) 0.47 Shewana3_3032 RNA polymerase sigma factor RpoE (RefSeq) — —
Shewanella oneidensis MR-1 0.25 SO2846 conserved hypothetical protein (NCBI ptt file) 0.47 SO1342 rpoE RNA polymerase sigma-24 factor (NCBI ptt file) — —
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_09295 hypothetical protein 0.47 CSW01_12485 RNA polymerase sigma factor RpoE — —
Shewanella loihica PV-4 0.23 Shew_2464 hypothetical protein (RefSeq) 0.48 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) low > 60
Pseudomonas sp. RS175 0.22 PFR28_02189 putative membrane transporter protein YfcA 0.48 PFR28_00690 RNA polymerase sigma-H factor low > 88
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_25900 hypothetical protein 0.48 AO356_04575 RNA polymerase subunit sigma low > 104
Pseudomonas simiae WCS417 0.21 PS417_12880 membrane protein 0.48 PS417_07120 RNA polymerase sigma-H factor — —
Pseudomonas fluorescens SBW25 0.21 PFLU_RS13560 TSUP family transporter 0.48 PFLU_RS07230 RNA polymerase sigma factor RpoE low > 109
Pseudomonas stutzeri RCH2 0.21 Psest_2079 Predicted permeases 0.48 Psest_3100 RNA polymerase sigma factor RpoE low > 67
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS13560 TSUP family transporter 0.48 PFLU_RS07230 RNA polymerase sigma factor RpoE 0.28 100
Pseudomonas syringae pv. syringae B728a 0.21 Psyr_2454 Protein of unknown function DUF81 0.48 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.21 Psyr_2454 Protein of unknown function DUF81 0.48 Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE low > 86
Pseudomonas sp. S08-1 0.20 OH686_03525 hypothetical protein 0.47 OH686_20045 RNA polymerase sigma factor RpoE low > 80
Ralstonia solanacearum IBSBF1503 0.10 RALBFv3_RS17725 sulfite exporter TauE/SafE family protein 0.56 RALBFv3_RS14445 RNA polymerase sigma factor RpoE low > 76

Not shown: 8 genomes with orthologs for GFF1891 only; 22 genomes with orthologs for GFF3339 only