Conservation of cofitness between GFF5612 and GFF2064 in Variovorax sp. SCN45

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF5612 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 1.0 GFF2064 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.170) 0.50 5
Ralstonia solanacearum IBSBF1503 0.73 RALBFv3_RS09540 NAD-dependent succinate-semialdehyde dehydrogenase 0.53 RALBFv3_RS11635 anhydro-N-acetylmuramic acid kinase low > 76
Ralstonia solanacearum UW163 0.73 UW163_RS04040 NAD-dependent succinate-semialdehyde dehydrogenase 0.53 UW163_RS01950 anhydro-N-acetylmuramic acid kinase — —
Ralstonia sp. UNC404CL21Col 0.73 ABZR87_RS05195 NAD-dependent succinate-semialdehyde dehydrogenase 0.52 ABZR87_RS07595 anhydro-N-acetylmuramic acid kinase low > 80
Herbaspirillum seropedicae SmR1 0.72 HSERO_RS05395 succinate-semialdehyde dehdyrogenase 0.50 HSERO_RS02010 anhydro-N-acetylmuramic acid kinase low > 78
Ralstonia solanacearum PSI07 0.72 RPSI07_RS23810 NAD-dependent succinate-semialdehyde dehydrogenase 0.54 RPSI07_RS21585 anhydro-N-acetylmuramic acid kinase low > 81
Cupriavidus basilensis FW507-4G11 0.71 RR42_RS21760 succinate-semialdehyde dehydrogenase 0.53 RR42_RS02660 anhydro-N-acetylmuramic acid kinase low > 128
Ralstonia solanacearum GMI1000 0.71 RS_RS00140 NAD-dependent succinate-semialdehyde dehydrogenase 0.54 RS_RS02460 anhydro-N-acetylmuramic acid kinase low > 80
Pseudomonas sp. S08-1 0.70 OH686_11875 Succinate-semialdehyde dehydrogenase [NAD(P)+] 0.48 OH686_15205 Anhydro-N-acetylmuramic acid kinase — —
Sinorhizobium meliloti 1021 0.69 SMc02780 succinate-semialdehyde dehydrogenase [NADP+] protein 0.23 SMc00527 anhydro-N-acetylmuramic acid kinase 0.26 40
Klebsiella michiganensis M5al 0.69 BWI76_RS05620 NAD-dependent succinate-semialdehyde dehydrogenase 0.40 BWI76_RS16420 anhydro-N-acetylmuramic acid kinase low > 92
Pseudomonas putida KT2440 0.69 PP_0213 succinate-semialdehyde dehydrogenase (NADP+) 0.46 PP_0434 Anhydro-N-acetylmuramic acid kinase low > 96
Pseudomonas syringae pv. syringae B728a 0.69 Psyr_0091 succinate semialdehyde dehydrogenase 0.45 Psyr_4567 Protein of unknown function UPF0075 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.69 Psyr_0091 succinate semialdehyde dehydrogenase 0.45 Psyr_4567 Protein of unknown function UPF0075 low > 86
Pseudomonas sp. RS175 0.69 PFR28_04755 Glutarate-semialdehyde dehydrogenase 0.46 PFR28_04031 Anhydro-N-acetylmuramic acid kinase low > 88
Pseudomonas fluorescens FW300-N2E2 0.69 Pf6N2E2_4014 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 0.46 Pf6N2E2_4838 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.69 AO356_10720 succinate-semialdehyde dehydrogenase 0.48 AO356_14500 anhydro-N-acetylmuramic acid kinase low > 104
Pseudomonas stutzeri RCH2 0.69 Psest_4237 succinate-semialdehyde dehydrogenase 0.48 Psest_3637 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases low > 67
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS12060 NAD-dependent succinate-semialdehyde dehydrogenase 0.48 QEN71_RS26820 anhydro-N-acetylmuramic acid kinase low > 153
Azospirillum brasilense Sp245 0.69 AZOBR_RS09720 succinate-semialdehyde dehdyrogenase 0.24 AZOBR_RS05815 anhydro-N-acetylmuramic acid kinase low > 97
Castellaniella sp019104865 MT123 0.68 ABCV34_RS09380 NADP-dependent succinate-semialdehyde dehydrogenase 0.45 ABCV34_RS10575 anhydro-N-acetylmuramic acid kinase low > 48
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_495 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20) (from data) 0.45 PfGW456L13_1235 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 87
Pseudomonas simiae WCS417 0.68 PS417_00895 succinate-semialdehyde dehydrogenase 0.46 PS417_25650 anhydro-N-acetylmuramic acid kinase low > 88
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_11505 succinate-semialdehyde dehydrogenase (EC 1.2.1.16) (from data) 0.47 AO353_07145 anhydro-N-acetylmuramic acid kinase low > 101
Pseudomonas fluorescens SBW25-INTG 0.68 PFLU_RS00910 NADP-dependent succinate-semialdehyde dehydrogenase 0.46 PFLU_RS27305 anhydro-N-acetylmuramic acid kinase low > 109
Pseudomonas fluorescens SBW25 0.68 PFLU_RS00910 NADP-dependent succinate-semialdehyde dehydrogenase 0.46 PFLU_RS27305 anhydro-N-acetylmuramic acid kinase low > 109
Pseudomonas fluorescens FW300-N1B4 0.68 Pf1N1B4_1734 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 0.46 Pf1N1B4_2562 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) — —
Escherichia coli ECRC62 0.68 BNILDI_11300 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.38 BNILDI_16795 anmK anhydro-N-acetylmuramic acid kinase low > 75
Escherichia coli ECOR38 0.68 HEPCGN_20150 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.39 HEPCGN_05870 anmK anhydro-N-acetylmuramic acid kinase low > 87
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_02680 succinate semialdehyde dehydrogenase 0.49 H281DRAFT_04259 anhydro-N-acetylmuramic acid kinase low > 103
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF1566 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) 0.41 GFF3634 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 78
Escherichia coli BW25113 0.68 b2661 gabD succinate-semialdehyde dehydrogenase I, NADP-dependent (NCBI) 0.38 b1640 ydhH anhydro-N-acetylmuramic acid kinase (NCBI) low > 76
Escherichia coli ECRC100 0.67 OKFHMN_20915 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.39 OKFHMN_27485 anmK anhydro-N-acetylmuramic acid kinase low > 80
Escherichia coli ECRC98 0.67 JDDGAC_24575 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.39 JDDGAC_02075 anmK anhydro-N-acetylmuramic acid kinase low > 86
Escherichia coli ECRC99 0.67 KEDOAH_07225 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.39 KEDOAH_00620 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli ECRC101 0.67 MCAODC_11435 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.39 MCAODC_17925 anmK anhydro-N-acetylmuramic acid kinase low > 87
Escherichia coli ECRC102 0.67 NIAGMN_18680 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.39 NIAGMN_00580 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli ECOR27 0.67 NOLOHH_12740 gabD NADP-dependent succinate-semialdehyde dehydrogenase 0.39 NOLOHH_18005 anmK anhydro-N-acetylmuramic acid kinase low > 75
Escherichia coli BL21 0.67 ECD_02517 succinate-semialdehyde dehydrogenase I, NADP-dependent 0.39 ECD_01610 anhydro-N-acetylmuramic acid kinase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_01071 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD 0.39 OHPLBJKB_02085 Anhydro-N-acetylmuramic acid kinase low > 73
Shewanella oneidensis MR-1 0.66 SO1275 gabD succinate-semialdehyde dehydrogenase (NADP+) [EC: 1.2.1.16] (from data) 0.42 SO1313 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.66 Shewana3_3092 succinate semialdehyde dehydrogenase (RefSeq) 0.41 Shewana3_3060 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) 0.54 56
Escherichia fergusonii Becca 0.66 EFB2_01269 Succinate-semialdehyde dehydrogenase [NADP(+)] GabD 0.39 EFB2_02352 Anhydro-N-acetylmuramic acid kinase low > 86
Agrobacterium fabrum C58 0.66 Atu5137 NAD-dependent succinyl-semialdehyde dehydrogenase 0.25 Atu1827 hypothetical protein low > 89
Escherichia coli Nissle 1917 0.65 ECOLIN_RS14840 NADP-dependent succinate-semialdehyde dehydrogenase 0.39 ECOLIN_RS09150 anhydro-N-acetylmuramic acid kinase — —
Paraburkholderia graminis OAS925 0.65 ABIE53_005621 succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase 0.49 ABIE53_003499 anhydro-N-acetylmuramic acid kinase low > 113
Dickeya dianthicola ME23 0.65 DZA65_RS12400 NAD-dependent succinate-semialdehyde dehydrogenase 0.39 DZA65_RS13095 anhydro-N-acetylmuramic acid kinase low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS11855 NAD-dependent succinate-semialdehyde dehydrogenase 0.39 HGI48_RS12640 anhydro-N-acetylmuramic acid kinase low > 71
Variovorax sp. OAS795 0.64 ABID97_RS11235 NAD-dependent succinate-semialdehyde dehydrogenase 0.80 ABID97_RS24970 anhydro-N-acetylmuramic acid kinase low > 91
Pectobacterium carotovorum WPP14 0.64 HER17_RS09885 NAD-dependent succinate-semialdehyde dehydrogenase 0.41 HER17_RS09280 anhydro-N-acetylmuramic acid kinase low > 75
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS22430 succinate-semialdehyde dehydrogenase 0.49 BPHYT_RS16645 anhydro-N-acetylmuramic acid kinase low > 109
Shewanella amazonensis SB2B 0.63 Sama_2637 succinate-semialdehyde dehydrogenase (NAD(P)(+)) (RefSeq) 0.44 Sama_0848 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 62
Bosea sp. OAE506 0.63 ABIE41_RS20985 NAD-dependent succinate-semialdehyde dehydrogenase 0.24 ABIE41_RS00035 anhydro-N-acetylmuramic acid kinase low > 77
Rhodopseudomonas palustris CGA009 0.62 TX73_002390 NAD-dependent succinate-semialdehyde dehydrogenase 0.24 TX73_012725 anhydro-N-acetylmuramic acid kinase low > 86
Phaeobacter inhibens DSM 17395 0.62 PGA1_c29650 succinate-semialdehyde dehdyrogenase GabD 0.23 PGA1_c11350 anhydro-N-acetylmuramic acid kinase AnmK low > 62
Serratia liquefaciens MT49 0.62 IAI46_22160 NAD-dependent succinate-semialdehyde dehydrogenase 0.42 IAI46_11350 anhydro-N-acetylmuramic acid kinase low > 86
Marinobacter adhaerens HP15 0.62 HP15_2020 succinate-semialdehyde dehydrogenase I 0.41 HP15_356 anhydro-N-acetylmuramic acid kinase low > 73
Rhizobium sp. OAE497 0.61 ABIE40_RS00140 NAD-dependent succinate-semialdehyde dehydrogenase 0.23 ABIE40_RS10025 anhydro-N-acetylmuramic acid kinase low > 107
Dinoroseobacter shibae DFL-12 0.59 Dshi_2887 succinic semialdehyde dehydrogenase (RefSeq) 0.19 Dshi_2150 protein of unknown function UPF0075 (RefSeq) low > 64
Shewanella loihica PV-4 0.56 Shew_3173 succinic semialdehyde dehydrogenase (RefSeq) 0.46 Shew_1020 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_08760 NAD-dependent succinate-semialdehyde dehydrogenase 0.39 CSW01_03615 anhydro-N-acetylmuramic acid kinase low > 62

Not shown: 5 genomes with orthologs for GFF5612 only; 26 genomes with orthologs for GFF2064 only