Conservation of cofitness between GFF2572 and GFF1837 in Sphingobium sp. HT1-2

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF2572 Ribonuclease HII (EC 3.1.26.4) 1.0 GFF1837 Inner membrane transport protein YdhP 0.67 14
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_1962 RNase HII (EC 3.1.26.4) 0.80 Ga0059261_0886 Arabinose efflux permease low > 68
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF4901 Ribonuclease HII (EC 3.1.26.4) 0.33 GFF2876 Putative drug efflux protein low > 90
Klebsiella pneumoniae MKP103 0.50 KDGMDA_13530 lipid-A-disaccharide synthase 0.51 KDGMDA_23455 MFS transporter — —
Pantoea sp. MT58 0.50 IAI47_15460 ribonuclease HII 0.44 IAI47_03850 MFS transporter low > 76
Pseudomonas segetis P6 0.50 ACVTMO_RS17060 rnhB ribonuclease HII 0.40 ACVTMO_RS18575 MFS transporter low > 75
Pantoea agglomerans CFBP13505 P0401 0.49 PagCFBP13505_RS13545 ribonuclease HII 0.43 PagCFBP13505_RS17120 MFS transporter low > 74
Pseudomonas aeruginosa PA14 0.49 IKLFDK_18595 ribonuclease HII 0.40 IKLFDK_02330 MFS transporter low > 98
Brevundimonas sp. GW460-12-10-14-LB2 0.49 A4249_RS09510 ribonuclease HII 0.75 A4249_RS02135 MFS transporter low > 48
Acidovorax sp. GW101-3H11 0.49 Ac3H11_432 Ribonuclease HII (EC 3.1.26.4) 0.29 Ac3H11_1989 Putative drug efflux protein low > 79
Pseudomonas aeruginosa PUPa3 0.49 DQ20_RS42360 rnhB;go_function=RNA ribonuclease HII 0.40 DQ20_RS57170 MFS transporter low > 101
Pseudomonas aeruginosa MRSN321 0.49 DY961_RS14765 rnhB;go_function=RNA ribonuclease HII 0.40 DY961_RS24720 MFS transporter low > 100
Enterobacter sp. TBS_079 0.48 MPMX20_00867 Ribonuclease HII 0.54 MPMX20_01980 Inner membrane transport protein YdhP low > 85
Pseudomonas syringae pv. syringae B728a 0.48 Psyr_1357 RNase HII 0.39 Psyr_4052 General substrate transporter:Major facilitator superfamily low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.48 Psyr_1357 RNase HII 0.39 Psyr_4052 General substrate transporter:Major facilitator superfamily low > 86
Escherichia coli BW25113 0.48 b0183 rnhB ribonuclease HII (NCBI) 0.52 b1657 ydhP predicted transporter (NCBI) low > 76
Escherichia coli ECRC62 0.48 BNILDI_09185 rnhB ribonuclease HII 0.52 BNILDI_16710 ydhP Inner membrane transport protein YdhP low > 75
Escherichia coli ECOR27 0.48 NOLOHH_02485 rnhB ribonuclease HII 0.52 NOLOHH_17920 ydhP Inner membrane transport protein YdhP low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_03480 Ribonuclease HII 0.52 OHPLBJKB_02068 Inner membrane transport protein YdhP low > 74
Escherichia fergusonii Becca 0.48 EFB2_03861 Ribonuclease HII 0.51 EFB2_02336 Inner membrane transport protein YdhP low > 86
Enterobacter asburiae PDN3 0.48 EX28DRAFT_3771 RNase HII (EC 3.1.26.4) 0.54 EX28DRAFT_1654 Arabinose efflux permease low > 76
Escherichia coli ECRC100 0.48 OKFHMN_10140 rnhB ribonuclease HII 0.52 OKFHMN_27400 ydhP Inner membrane transport protein YdhP low > 79
Escherichia coli ECRC102 0.48 NIAGMN_07990 rnhB ribonuclease HII 0.52 NIAGMN_00665 ydhP Inner membrane transport protein YdhP low > 80
Escherichia coli ECRC98 0.48 JDDGAC_13735 rnhB ribonuclease HII 0.52 JDDGAC_01990 ydhP Inner membrane transport protein YdhP low > 87
Escherichia coli ECRC101 0.48 MCAODC_00655 rnhB ribonuclease HII 0.52 MCAODC_18010 ydhP Inner membrane transport protein YdhP low > 87
Escherichia coli ECOR38 0.48 HEPCGN_08095 rnhB ribonuclease HII 0.52 HEPCGN_05785 ydhP Inner membrane transport protein YdhP low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF39 Ribonuclease HII (EC 3.1.26.4) 0.33 GFF4040 Putative drug efflux protein low > 78
Escherichia coli ECRC99 0.48 KEDOAH_18015 rnhB ribonuclease HII 0.52 KEDOAH_00710 ydhP Inner membrane transport protein YdhP — —
Erwinia amylovora T8 0.48 OLJFJH_00560 ribonuclease HII 0.40 OLJFJH_08870 MFS transporter low > 58
Pseudomonas simiae WCS417 0.48 PS417_06280 ribonuclease HII 0.68 PS417_14585 MFS transporter low > 88
Escherichia coli Nissle 1917 0.48 ECOLIN_RS00995 ribonuclease HII 0.53 ECOLIN_RS09235 MFS transporter — —
Klebsiella michiganensis M5al 0.48 BWI76_RS05285 ribonuclease HII 0.52 BWI76_RS16505 MFS transporter — —
Escherichia coli BL21 0.48 ECD_00181 ribonuclease HII 0.52 ECD_01627 putative MFS transporter, inner membrane protein low > 61
Pseudomonas lactucae CFBP13502 0.47 GEMAOFIL_01426 Ribonuclease HII 0.41 GEMAOFIL_01519 Inner membrane transport protein YdhP low > 96
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS06345 ribonuclease HII 0.41 PFLU_RS06850 MFS transporter low > 109
Pseudomonas fluorescens SBW25 0.47 PFLU_RS06345 ribonuclease HII 0.41 PFLU_RS06850 MFS transporter low > 109
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS10945 ribonuclease HII 0.44 HSERO_RS14740 efflux transmembrane protein low > 78
Pseudomonas sp. S08-1 0.47 OH686_06415 Ribonuclease HII 0.40 OH686_06195 Uncharacterized MFS-type transporter — —
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_16530 ribonuclease HII 0.43 AO353_17325 arabinose transporter permease low > 101
Pseudomonas orientalis W4I3 0.46 QF045_RS09125 ribonuclease HII 0.68 QF045_RS15185 MFS transporter low > 93
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_3098 Ribonuclease HII (EC 3.1.26.4) 0.43 Pf1N1B4_3251 Putative sugar transport protein low > 87
Alteromonas macleodii MIT1002 0.46 MIT1002_01017 Ribonuclease HII 0.35 MIT1002_01181 Inner membrane transport protein YdhP low > 70
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_3055 Ribonuclease HII (EC 3.1.26.4) 0.66 Pf6N2E2_1748 Putative transport protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_05970 ribonuclease HII 0.64 AO356_29480 MFS transporter low > 104
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_4694 Ribonuclease HII (EC 3.1.26.4) 0.43 PfGW456L13_1054 Arabinose efflux permease — —
Rahnella sp. WP5 0.46 EX31_RS12965 ribonuclease HII 0.39 EX31_RS13285 MFS transporter low > 89
Pseudomonas sp. SVBP6 0.46 COO64_RS19710 rnhB ribonuclease HII 0.39 COO64_RS12120 MFS transporter low > 93
Pseudomonas sp. RS175 0.46 PFR28_00410 Ribonuclease HII 0.69 PFR28_04673 Inner membrane transport protein YdhP — —
Dickeya dianthicola 67-19 0.45 HGI48_RS05185 ribonuclease HII 0.17 HGI48_RS09295 sugar transporter — —
Bacteroides thetaiotaomicron VPI-5482 0.45 BT3412 ribonuclease HII (NCBI ptt file) 0.29 BT3113 putative transmembrane efflux protein (NCBI ptt file) low > 81
Dickeya dianthicola ME23 0.45 DZA65_RS05525 ribonuclease HII 0.18 DZA65_RS09600 sugar transporter — —
Phocaeicola vulgatus CL09T03C04 0.45 HMPREF1058_RS12265 ribonuclease HII 0.30 HMPREF1058_RS12175 MFS transporter AraJ low > 67
Pseudomonas putida KT2440 0.45 PP_1605 Ribonuclease HII 0.66 PP_2535 putative inner membrane transport protein low > 96
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS11895 ribonuclease HII 0.48 ABZR87_RS00250 MFS transporter low > 80
Dickeya dadantii 3937 0.45 DDA3937_RS05185 ribonuclease HII 0.33 DDA3937_RS03650 MFS transporter low > 74
Pseudomonas sp. BP01 0.45 JOY50_RS23670 rnhB ribonuclease HII 0.65 JOY50_RS04620 MFS transporter low > 84
Bacteroides stercoris CC31F 0.45 HMPREF1181_RS02630 ribonuclease HII 0.28 HMPREF1181_RS16545 MFS transporter AraJ low > 56
Phocaeicola dorei CL03T12C01 0.45 ABI39_RS04525 ribonuclease HII 0.30 ABI39_RS04620 MFS transporter AraJ low > 72
Bacteroides ovatus ATCC 8483 0.44 BACOVA_01892 ribonuclease HII 0.29 BACOVA_02814 transporter, major facilitator family protein low > 96
Pectobacterium carotovorum WPP14 0.44 HER17_RS16265 ribonuclease HII 0.40 HER17_RS09415 MFS transporter low > 75
Pseudomonas sp. DMC3 0.44 GFF2067 Ribonuclease HII 0.66 GFF1159 Inner membrane transport protein YdhP low > 89
Dinoroseobacter shibae DFL-12 0.44 Dshi_0023 Ribonuclease H (RefSeq) 0.17 Dshi_2354 major facilitator superfamily MFS_1 (RefSeq) low > 64
Serratia liquefaciens MT49 0.44 IAI46_20190 ribonuclease HII 0.42 IAI46_20530 MFS transporter low > 87
Acinetobacter baumannii LAC-4 0.43 RR41_RS09985 ribonuclease HII 0.51 RR41_RS00200 MFS transporter low > 55
Marinobacter adhaerens HP15 0.43 HP15_1180 ribonuclease HII 0.35 HP15_2719 transmembrane efflux protein low > 73
Shewanella amazonensis SB2B 0.41 Sama_1153 rnhB ribonuclease HII (RefSeq) 0.32 Sama_2390 putative transmembrane efflux transmembrane protein (RefSeq) low > 62
Rhizobium sp. OAE497 0.41 ABIE40_RS05340 ribonuclease HII 0.42 ABIE40_RS12880 MFS transporter low > 107
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS21650 ribonuclease HII 0.42 ABZR86_RS18115 MFS transporter low > 74
Acinetobacter radioresistens SK82 0.41 MPMX26_01083 Ribonuclease HII 0.53 MPMX26_03004 Inner membrane transport protein YdhP low > 36
Pedobacter sp. GW460-11-11-14-LB5 0.41 CA265_RS23950 ribonuclease HII 0.31 CA265_RS00645 MFS transporter low > 88
Shewanella sp. ANA-3 0.41 Shewana3_2801 rnhB ribonuclease HII (RefSeq) 0.30 Shewana3_1277 major facilitator transporter (RefSeq) low > 73
Agrobacterium fabrum C58 0.40 Atu0720 ribonuclease HII 0.37 Atu4292 chloramphenicol resistance protein low > 89
Azospirillum brasilense Sp245 0.39 AZOBR_RS20300 ribonuclease HII 0.15 AZOBR_RS21030 MFS transporter low > 97
Rhodospirillum rubrum S1H 0.39 Rru_A3209 Ribonuclease H (NCBI) 0.38 Rru_A2540 Major facilitator superfamily protein MFS_1 (NCBI) — —
Sinorhizobium meliloti 1021 0.39 SMc00867 ribonuclease HII 0.36 SM_b20071 efflux protein — —
Cellulophaga baltica 18 0.39 M666_RS01835 ribonuclease HII 0.33 M666_RS14955 MFS transporter low > 67
Azospirillum sp. SherDot2 0.37 MPMX19_05650 Ribonuclease HII 0.35 MPMX19_01134 Inner membrane transport protein YdhP low > 112
Lysobacter sp. OAE881 0.36 ABIE51_RS06875 ribonuclease HII 0.37 ABIE51_RS06085 MFS transporter low > 62

Not shown: 28 genomes with orthologs for GFF2572 only; 14 genomes with orthologs for GFF1837 only