Conservation of cofitness between EX31_RS14255 and EX31_RS14245 in Rahnella sp. WP5

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS14255 ribonuclease E activity regulator RraA 1.0 EX31_RS14245 HslU--HslV peptidase ATPase subunit 0.53 3
Serratia liquefaciens MT49 0.95 IAI46_24585 ribonuclease E activity regulator RraA 0.93 IAI46_24575 HslU--HslV peptidase ATPase subunit low > 86
Pectobacterium carotovorum WPP14 0.93 HER17_RS00840 ribonuclease E activity regulator RraA 0.91 HER17_RS00850 HslU--HslV peptidase ATPase subunit low > 75
Erwinia tracheiphila SCR3 0.93 LU632_RS19685 rraA ribonuclease E activity regulator RraA 0.87 LU632_RS19675 hslU HslU--HslV peptidase ATPase subunit low > 74
Escherichia coli ECRC100 0.93 OKFHMN_13750 rraA ribonuclease E activity regulator RraA 0.88 OKFHMN_13740 hslU HslU--HslV peptidase ATPase subunit low > 80
Escherichia coli ECRC62 0.93 BNILDI_05635 rraA ribonuclease E activity regulator RraA 0.88 BNILDI_05645 hslU HslU--HslV peptidase ATPase subunit low > 75
Escherichia coli ECOR38 0.93 HEPCGN_12395 rraA ribonuclease E activity regulator RraA 0.89 HEPCGN_12385 hslU HslU--HslV peptidase ATPase subunit low > 87
Escherichia coli ECOR27 0.93 NOLOHH_05895 rraA ribonuclease E activity regulator RraA 0.88 NOLOHH_05885 hslU HslU--HslV peptidase ATPase subunit low > 75
Escherichia coli BL21 0.93 ECD_03814 ribonuclease E (RNase E) inhibitor protein 0.88 ECD_03816 molecular chaperone and ATPase component of HslUV protease low > 61
Escherichia coli ECRC101 0.93 MCAODC_04250 rraA ribonuclease E activity regulator RraA 0.88 MCAODC_04240 hslU HslU--HslV peptidase ATPase subunit low > 87
Escherichia coli ECRC102 0.93 NIAGMN_11505 rraA ribonuclease E activity regulator RraA 0.88 NIAGMN_11495 hslU HslU--HslV peptidase ATPase subunit — —
Escherichia coli ECRC98 0.93 JDDGAC_17375 rraA ribonuclease E activity regulator RraA 0.88 JDDGAC_17365 hslU HslU--HslV peptidase ATPase subunit low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.93 OHPLBJKB_04122 Regulator of ribonuclease activity A 0.88 OHPLBJKB_04120 ATP-dependent protease ATPase subunit HslU low > 73
Escherichia coli Nissle 1917 0.93 ECOLIN_RS22625 ribonuclease E activity regulator RraA 0.89 ECOLIN_RS22635 HslU--HslV peptidase ATPase subunit low > 55
Escherichia coli BW25113 0.93 b3929 rraA ribonuclease activity regulator protein RraA (NCBI) 0.88 b3931 hslU ATP-dependent protease ATP-binding subunit (NCBI) low > 76
Escherichia fergusonii Becca 0.93 EFB2_04689 Regulator of ribonuclease activity A 0.89 EFB2_04687 ATP-dependent protease ATPase subunit HslU low > 86
Escherichia coli ECRC99 0.93 KEDOAH_14410 rraA ribonuclease E activity regulator RraA 0.88 KEDOAH_14420 hslU HslU--HslV peptidase ATPase subunit — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF2311 Ribonuclease E inhibitor RraA 0.89 GFF2313 ATP-dependent hsl protease ATP-binding subunit HslU low > 78
Enterobacter sp. TBS_079 0.91 MPMX20_04540 Regulator of ribonuclease activity A 0.89 MPMX20_04538 ATP-dependent protease ATPase subunit HslU low > 85
Klebsiella michiganensis M5al 0.90 BWI76_RS00740 ribonuclease E activity regulator RraA 0.90 BWI76_RS00750 ATP-dependent protease ATP-binding subunit HslU low > 92
Enterobacter asburiae PDN3 0.90 EX28DRAFT_4402 regulator of ribonuclease activity A 0.89 EX28DRAFT_4404 ATP-dependent protease HslVU, ATPase subunit low > 76
Dickeya dianthicola 67-19 0.86 HGI48_RS20470 ribonuclease E activity regulator RraA 0.89 HGI48_RS20460 HslU--HslV peptidase ATPase subunit low > 71
Dickeya dadantii 3937 0.85 DDA3937_RS00905 ribonuclease E activity regulator RraA 0.89 DDA3937_RS00915 HslU--HslV peptidase ATPase subunit low > 74
Dickeya dianthicola ME23 0.85 DZA65_RS21515 ribonuclease E activity regulator RraA 0.88 DZA65_RS21505 HslU--HslV peptidase ATPase subunit low > 75
Pantoea sp. MT58 0.82 IAI47_00840 ribonuclease E activity regulator RraA 0.88 IAI47_00845 HslU--HslV peptidase ATPase subunit low > 76
Shewanella oneidensis MR-1 0.73 SO4197 menG-2 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) 0.77 SO4163 hslU heat shock protein HslVU, ATPase subunit HslU (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.72 CSW01_13500 ribonuclease E activity regulator RraA 0.75 CSW01_13510 HslU--HslV peptidase ATPase subunit low > 62
Shewanella sp. ANA-3 0.72 Shewana3_3723 ribonuclease activity regulator protein RraA (RefSeq) 0.77 Shewana3_3700 hslU ATP-dependent protease ATP-binding subunit HslU (RefSeq) low > 73
Shewanella amazonensis SB2B 0.71 Sama_3200 ribonuclease activity regulator protein RraA (RefSeq) 0.76 Sama_0440 hslU ATP-dependent protease ATP-binding subunit HslU (RefSeq) low > 62
Shewanella loihica PV-4 0.70 Shew_3370 ribonuclease activity regulator protein RraA (RefSeq) 0.77 Shew_0374 hslU ATP-dependent protease ATP-binding subunit (RefSeq) — —
Alteromonas macleodii MIT1002 0.66 MIT1002_00164 Regulator of ribonuclease activity A 0.74 MIT1002_03659 Unfoldase HslU low > 70
Pseudomonas stutzeri RCH2 0.58 Psest_2315 RraA famliy 0.68 Psest_3937 ATP-dependent protease HslVU, ATPase subunit low > 67
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_00850 ribonuclease activity regulator protein RraA 0.70 AO353_12425 ATP-dependent protease ATP-binding subunit HslU — —
Pseudomonas sp. S08-1 0.57 OH686_01650 Ribonuclease E inhibitor RraA 0.69 OH686_10100 ATP-dependent protease HslVU, ATPase subunit low > 80
Pseudomonas putida KT2440 0.57 PP_2084 Putative regulator of ribonuclease activity 0.69 PP_5001 protease HslVU, ATPase component low > 96
Pseudomonas sp. RS175 0.57 PFR28_01040 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.70 PFR28_04998 ATP-dependent protease ATPase subunit HslU low > 88
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_2387 Ribonuclease E inhibitor RraA 0.68 Pf6N2E2_3770 ATP-dependent hsl protease ATP-binding subunit HslU low > 103
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_3828 Ribonuclease E inhibitor RraA 0.70 Pf1N1B4_1553 ATP-dependent hsl protease ATP-binding subunit HslU — —
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_02815 ribonuclease activity regulator protein RraA 0.68 AO356_09460 ATP-dependent protease ATP-binding subunit HslU 0.36 25
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.67 PFLU_RS01960 ATP-dependent protease ATPase subunit HslU low > 109
Pseudomonas fluorescens SBW25 0.56 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.67 PFLU_RS01960 ATP-dependent protease ATPase subunit HslU low > 109
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_2092 Protein of unknown function 1935 0.70 Psyr_0394 Heat shock protein HslU low > 86
Pseudomonas simiae WCS417 0.56 PS417_21010 ribonuclease activity regulator protein RraA 0.67 PS417_01915 ATP-dependent protease ATP-binding subunit HslU low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_2092 Protein of unknown function 1935 0.70 Psyr_0394 Heat shock protein HslU low > 86
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_4110 Ribonuclease E inhibitor RraA 0.68 PfGW456L13_290 ATP-dependent hsl protease ATP-binding subunit HslU — —
Marinobacter adhaerens HP15 0.48 HP15_2228 ribonuclease activity regulator protein RraA 0.68 HP15_465 heat shock protein HslVU, ATPase subunit HslU low > 73
Xanthomonas campestris pv. campestris strain 8004 0.46 Xcc-8004.1848.1 Ribonuclease E inhibitor RraA 0.63 Xcc-8004.852.1 ATP-dependent hsl protease ATP-binding subunit HslU low > 74
Dechlorosoma suillum PS 0.43 Dsui_0010 RraA family protein 0.67 Dsui_0580 ATP-dependent protease HslVU, ATPase subunit low > 51
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS06240 ribonuclease E activity regulator RraA 0.61 QEN71_RS00330 ATP-dependent protease ATPase subunit HslU low > 153
Lysobacter sp. OAE881 0.42 ABIE51_RS04140 ribonuclease E activity regulator RraA 0.62 ABIE51_RS03045 ATP-dependent protease ATPase subunit HslU — —
Azospirillum brasilense Sp245 0.41 AZOBR_RS17130 ribonuclease 0.55 AZOBR_RS01650 ATP-dependent protease — —
Acidovorax sp. GW101-3H11 0.41 Ac3H11_2834 Ribonuclease E inhibitor RraA 0.66 Ac3H11_2005 ATP-dependent hsl protease ATP-binding subunit HslU low > 79
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS11580 ribonuclease E activity regulator RraA 0.65 ABZR87_RS05120 ATP-dependent protease ATPase subunit HslU low > 80
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS10555 ribonuclease 0.64 HSERO_RS00915 ATP-dependent protease low > 78
Ralstonia solanacearum PSI07 0.40 RPSI07_RS17355 ribonuclease E inhibitor RraA 0.66 RPSI07_RS23740 ATP-dependent protease ATPase subunit HslU low > 81
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS00130 ribonuclease 0.66 RALBFv3_RS09625 ATP-dependent protease ATPase subunit HslU low > 76
Ralstonia solanacearum UW163 0.39 UW163_RS13460 ribonuclease 0.66 UW163_RS03955 ATP-dependent protease ATPase subunit HslU — —
Variovorax sp. SCN45 0.39 GFF4367 KEGG: regulator of ribonuclease activity A 0.66 GFF4483 ATP-dependent hsl protease ATP-binding subunit HslU — —
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS12315 ribonuclease 0.63 BPHYT_RS01630 ATP-dependent protease ATPase subunit HslU — —
Azospirillum sp. SherDot2 0.39 MPMX19_04842 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 0.54 MPMX19_02549 ATP-dependent protease ATPase subunit HslU low > 112
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS12215 ribonuclease 0.64 RR42_RS01065 ATP-dependent protease ATP-binding subunit HslU low > 128
Ralstonia solanacearum GMI1000 0.37 RS_RS06790 ribonuclease E inhibitor RraA 0.66 RS_RS00210 HslU--HslV peptidase ATPase subunit low > 80

Not shown: 2 genomes with orthologs for EX31_RS14255 only; 26 genomes with orthologs for EX31_RS14245 only