Conservation of cofitness between ECD_02630 and ECD_02758 in Escherichia coli BL21

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 1.0 ECD_02758 D-erythrose 4-phosphate dehydrogenase 0.52 18
Escherichia coli BW25113 1.00 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 1.00 b2927 epd D-erythrose 4-phosphate dehydrogenase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 OHPLBJKB_00789 D-erythrose-4-phosphate dehydrogenase low > 73
Escherichia coli ECRC62 0.99 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 BNILDI_09835 epd erythrose-4-phosphate dehydrogenase low > 75
Escherichia coli ECOR27 0.99 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 NOLOHH_11295 epd erythrose-4-phosphate dehydrogenase low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 ECOLIN_RS16265 erythrose-4-phosphate dehydrogenase low > 55
Escherichia coli ECRC98 0.99 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 JDDGAC_23015 epd erythrose-4-phosphate dehydrogenase low > 86
Escherichia coli ECRC102 0.99 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 NIAGMN_17150 epd erythrose-4-phosphate dehydrogenase — —
Escherichia coli ECRC99 0.99 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 KEDOAH_08755 epd erythrose-4-phosphate dehydrogenase — —
Escherichia coli ECRC101 0.99 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 MCAODC_09905 epd erythrose-4-phosphate dehydrogenase low > 87
Escherichia coli ECRC100 0.99 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 OKFHMN_19385 epd erythrose-4-phosphate dehydrogenase low > 80
Escherichia coli ECOR38 0.98 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 HEPCGN_18695 epd erythrose-4-phosphate dehydrogenase low > 87
Escherichia fergusonii Becca 0.98 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 EFB2_00979 D-erythrose-4-phosphate dehydrogenase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.95 GFF3022 D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72) low > 78
Enterobacter asburiae PDN3 0.80 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.95 EX28DRAFT_2973 erythrose-4-phosphate dehydrogenase low > 76
Enterobacter sp. TBS_079 0.80 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.96 MPMX20_03779 D-erythrose-4-phosphate dehydrogenase low > 85
Klebsiella michiganensis M5al 0.79 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.92 BWI76_RS23985 erythrose-4-phosphate dehydrogenase low > 92
Dickeya dianthicola ME23 0.66 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.82 DZA65_RS19580 erythrose-4-phosphate dehydrogenase low > 75
Dickeya dianthicola 67-19 0.66 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.82 HGI48_RS18445 erythrose-4-phosphate dehydrogenase low > 71
Dickeya dadantii 3937 0.65 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.82 DDA3937_RS18520 erythrose-4-phosphate dehydrogenase low > 74
Pectobacterium carotovorum WPP14 0.64 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.85 HER17_RS02685 erythrose-4-phosphate dehydrogenase low > 75
Pantoea sp. MT58 0.64 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.85 IAI47_03685 erythrose-4-phosphate dehydrogenase low > 76
Serratia liquefaciens MT49 0.63 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.82 IAI46_21015 erythrose-4-phosphate dehydrogenase low > 86
Rahnella sp. WP5 0.62 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.81 EX31_RS21405 erythrose-4-phosphate dehydrogenase low > 89
Erwinia tracheiphila SCR3 0.59 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.83 LU632_RS05535 epd erythrose-4-phosphate dehydrogenase low > 74
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.71 CSW01_02530 D-erythrose-4-phosphate dehydrogenase low > 62
Shewanella amazonensis SB2B 0.45 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.64 Sama_2758 erythrose 4-phosphate dehydrogenase (RefSeq) low > 62
Shewanella loihica PV-4 0.44 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.66 Shew_0753 erythrose 4-phosphate dehydrogenase (RefSeq) — —
Shewanella sp. ANA-3 0.43 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.67 Shewana3_3352 erythrose 4-phosphate dehydrogenase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.43 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.66 SO0931 epd D-erythrose-4-phosphate dehydrogenase (NCBI ptt file) low > 76
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA 0.49 B158DRAFT_0511 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (EC 1.2.1.12) — —
Marinobacter adhaerens HP15 0.36 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.54 HP15_2912 glyceraldehyde 3-phosphate dehydrogenase, type I — —
Pseudomonas stutzeri RCH2 0.36 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.52 Psest_0329 erythrose-4-phosphate dehydrogenase — —
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 ABZR86_RS18615 type I glyceraldehyde-3-phosphate dehydrogenase low > 74
Castellaniella sp019104865 MT123 0.35 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 ABCV34_RS15455 type I glyceraldehyde-3-phosphate dehydrogenase — —
Acinetobacter radioresistens SK82 0.34 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.45 MPMX26_01087 D-erythrose-4-phosphate dehydrogenase low > 36
Pseudomonas simiae WCS417 0.34 PS417_20155 23S rRNA methyltransferase 0.52 PS417_26435 glyceraldehyde-3-phosphate dehydrogenase — —
Pseudomonas sp. S08-1 0.33 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.53 OH686_10765 erythrose-4-phosphate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.33 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 PFLU_RS28090 erythrose-4-phosphate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 PFLU_RS28090 erythrose-4-phosphate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.52 Psyr_4791 D-erythrose-4-phosphate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.52 Psyr_4791 D-erythrose-4-phosphate dehydrogenase low > 86
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.53 Pf1N1B4_2398 D-erythrose-4-phosphate dehydrogenase — —
Pseudomonas sp. RS175 0.32 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.54 PFR28_04187 D-erythrose-4-phosphate dehydrogenase — —
Dechlorosoma suillum PS 0.32 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.46 Dsui_1558 glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_19055 23S rRNA methyltransferase 0.54 AO356_13685 glyceraldehyde-3-phosphate dehydrogenase 0.25 65
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.53 Pf6N2E2_4656 D-erythrose-4-phosphate dehydrogenase — —
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS14825 23S rRNA methyltransferase 0.52 HSERO_RS07125 glyceraldehyde-3-phosphate dehydrogenase — —
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS09125 23S rRNA methyltransferase 0.54 BPHYT_RS16835 glyceraldehyde-3-phosphate dehydrogenase low > 109
Alteromonas macleodii MIT1002 0.31 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.67 MIT1002_00862 D-erythrose-4-phosphate dehydrogenase — —
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase 0.54 H281DRAFT_06315 glyceraldehyde-3-phosphate dehydrogenase (NAD+) low > 103
Pseudomonas putida KT2440 0.30 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.53 PP_4964 D-erythrose 4-phosphate dehydrogenase 0.34 55
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_02715 23S rRNA methyltransferase 0.52 AO353_07950 glyceraldehyde-3-phosphate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.53 PfGW456L13_1065 D-erythrose-4-phosphate dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.55 QEN71_RS27005 type I glyceraldehyde-3-phosphate dehydrogenase low > 153
Caulobacter crescentus NA1000 0.16 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.42 CCNA_03358 glyceraldehyde 3-phosphate dehydrogenase — —
Caulobacter crescentus NA1000 Δfur 0.16 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.42 CCNA_03358 glyceraldehyde 3-phosphate dehydrogenase low > 67
Azospirillum sp. SherDot2 0.16 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.48 MPMX19_00689 Glyceraldehyde-3-phosphate dehydrogenase 1 low > 112
Rhodopseudomonas palustris CGA009 0.15 TX73_004885 methyltransferase 0.49 TX73_004865 type I glyceraldehyde-3-phosphate dehydrogenase — —
Rhizobium sp. OAE497 0.15 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.48 ABIE40_RS15870 type I glyceraldehyde-3-phosphate dehydrogenase — —
Sinorhizobium meliloti 1021 0.14 SMc00974 RNA methyltransferase 0.47 SMc03979 glyceraldehyde-3-phosphate dehydrogenase low > 103
Agrobacterium fabrum C58 0.14 Atu0735 RNA methyltransferase 0.48 Atu3737 glyceraldehyde 3-phosphate dehydrogenase — —
Bosea sp. OAE506 0.14 ABIE41_RS22255 RNA methyltransferase 0.44 ABIE41_RS09420 type I glyceraldehyde-3-phosphate dehydrogenase — —
Phaeobacter inhibens DSM 17395 0.14 PGA1_c34810 putative RNA methyltransferase 0.46 PGA1_c27490 glyceraldehyde-3-phosphate dehydrogenase Gap — —
Rhodospirillum rubrum S1H 0.12 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.47 Rru_A0222 Glyceraldehyde-3-phosphate dehydrogenase, type I (NCBI) — —

Not shown: 32 genomes with orthologs for ECD_02630 only; 1 genomes with orthologs for ECD_02758 only