Conservation of cofitness between ECD_02630 and ECD_02100 in Escherichia coli BL21

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 1.0 ECD_02100 UPF0153 cysteine cluster protein 0.64 1
Escherichia coli BW25113 1.00 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 1.00 b4502 yeiW hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 OHPLBJKB_01539 hypothetical protein — —
Escherichia coli ECRC62 0.99 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 BNILDI_13920 yeiW UPF0153 protein YeiW low > 75
Escherichia coli ECOR27 0.99 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 NOLOHH_15000 yeiW UPF0153 protein YeiW low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 ECOLIN_RS12695 YkgJ family cysteine cluster protein — —
Escherichia coli ECRC102 0.99 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 NIAGMN_21190 yeiW UPF0153 protein YeiW — —
Escherichia coli ECRC98 0.99 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 JDDGAC_27385 yeiW UPF0153 protein YeiW low > 86
Escherichia coli ECRC99 0.99 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 KEDOAH_04760 yeiW UPF0153 protein YeiW — —
Escherichia coli ECRC101 0.99 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 MCAODC_14475 yeiW UPF0153 protein YeiW low > 87
Escherichia coli ECRC100 0.99 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 OKFHMN_23425 yeiW UPF0153 protein YeiW — —
Escherichia coli ECOR38 0.98 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 HEPCGN_22690 yeiW UPF0153 protein YeiW low > 87
Escherichia fergusonii Becca 0.98 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 EFB2_01686 hypothetical protein low > 86
Enterobacter sp. TBS_079 0.80 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 MPMX20_03135 hypothetical protein low > 85
Klebsiella michiganensis M5al 0.79 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.70 BWI76_RS19745 zinc/iron-chelating domain-containing protein — —
Dickeya dianthicola ME23 0.66 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 DZA65_RS09555 proteinase inhibitor low > 75
Dickeya dianthicola 67-19 0.66 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 HGI48_RS09250 YkgJ family cysteine cluster protein low > 71
Dickeya dadantii 3937 0.65 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 DDA3937_RS22190 YkgJ family cysteine cluster protein low > 74
Pectobacterium carotovorum WPP14 0.64 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.68 HER17_RS12875 hypothetical protein low > 75
Pantoea sp. MT58 0.64 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 IAI47_06645 YkgJ family cysteine cluster protein low > 76
Serratia liquefaciens MT49 0.63 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.71 IAI46_17265 YkgJ family cysteine cluster protein — —
Rahnella sp. WP5 0.62 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.74 EX31_RS19085 YkgJ family cysteine cluster protein low > 89
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 CSW01_05380 YkgJ family cysteine cluster protein low > 62
Shewanella amazonensis SB2B 0.45 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.55 Sama_0055 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.44 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.56 Shew_3811 hypothetical protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.43 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.55 Shewana3_0046 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.43 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.54 SO0044 conserved hypothetical protein (NCBI ptt file) low > 76
Pseudomonas stutzeri RCH2 0.36 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.52 Psest_2500 hypothetical protein low > 67
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.62 Xcc-8004.453.1 Proteinase inhibitor — —
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.57 ABZR86_RS14980 YkgJ family cysteine cluster protein low > 74
Rhodanobacter denitrificans MT42 0.35 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 LRK55_RS08365 YkgJ family cysteine cluster protein — —
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 LRK54_RS08600 YkgJ family cysteine cluster protein — —
Pseudomonas simiae WCS417 0.34 PS417_20155 23S rRNA methyltransferase 0.51 PS417_21265 hypothetical protein — —
Pseudomonas sp. S08-1 0.33 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.54 OH686_02005 UPF0153 protein YeiW low > 80
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.51 PFLU_RS22885 YkgJ family cysteine cluster protein low > 109
Pseudomonas fluorescens SBW25 0.33 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.51 PFLU_RS22885 YkgJ family cysteine cluster protein low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.49 Psyr_2002 Protein of unknown function UPF0153 — —
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.49 Psyr_2002 Protein of unknown function UPF0153 — —
Pseudomonas sp. RS175 0.32 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.56 PFR28_02971 hypothetical protein — —
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.55 Pf1N1B4_384 proteinase inhibitor low > 87
Dechlorosoma suillum PS 0.32 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.66 Dsui_0425 putative Fe-S oxidoreductase low > 51
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_19055 23S rRNA methyltransferase 0.56 AO356_20355 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.55 Pf6N2E2_5991 proteinase inhibitor low > 103
Ralstonia sp. UNC404CL21Col 0.31 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 ABZR87_RS08785 YkgJ family cysteine cluster protein low > 80
Acidovorax sp. GW101-3H11 0.31 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.67 Ac3H11_4962 Proteinase inhibitor low > 79
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS14825 23S rRNA methyltransferase 0.66 HSERO_RS02445 proteinase inhibitor low > 78
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS09125 23S rRNA methyltransferase 0.61 BPHYT_RS15485 proteinase inhibitor low > 109
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS13170 23S rRNA methyltransferase 0.67 RR42_RS15640 hypothetical protein low > 128
Ralstonia solanacearum GMI1000 0.31 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 RS_RS03515 YkgJ family cysteine cluster protein — —
Ralstonia solanacearum UW163 0.30 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 UW163_RS00830 YkgJ family cysteine cluster protein — —
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 RALBFv3_RS12735 YkgJ family cysteine cluster protein — —
Pseudomonas putida KT2440 0.30 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.52 PP_4195 putative oxidoreductase — —
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_02715 23S rRNA methyltransferase 0.57 AO353_01200 hypothetical protein — —
Ralstonia solanacearum PSI07 0.30 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 RPSI07_RS20525 YkgJ family cysteine cluster protein — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.62 GFF2023 Proteinase inhibitor — —
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.61 QEN71_RS03205 YkgJ family cysteine cluster protein low > 153

Not shown: 41 genomes with orthologs for ECD_02630 only; 1 genomes with orthologs for ECD_02100 only