Conservation of cofitness between ECD_02087 and ECD_00392 in Escherichia coli BL21

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02087 UPF0324 family inner membrane protein 1.0 ECD_00392 HU, DNA-binding transcriptional regulator, beta subunit 0.40 10
Escherichia coli ECRC99 1.00 KEDOAH_04695 yeiH UPF0324 membrane protein YeiH 0.99 KEDOAH_19650 hupB DNA-binding protein HU-beta — —
Escherichia coli ECRC100 1.00 OKFHMN_23490 yeiH UPF0324 membrane protein YeiH 0.99 OKFHMN_08315 hupB DNA-binding protein HU-beta low > 80
Escherichia coli ECRC62 1.00 BNILDI_13985 yeiH UPF0324 membrane protein YeiH 0.99 BNILDI_22665 hupB DNA-binding protein HU-beta low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01553 hypothetical protein 1.00 OHPLBJKB_03233 DNA-binding protein HU-beta low > 73
Escherichia coli ECRC102 1.00 NIAGMN_21255 yeiH UPF0324 membrane protein YeiH 0.99 NIAGMN_06370 hupB DNA-binding protein HU-beta — —
Escherichia coli ECRC98 1.00 JDDGAC_27450 yeiH UPF0324 membrane protein YeiH 0.99 JDDGAC_11970 hupB DNA-binding protein HU-beta low > 86
Escherichia coli ECRC101 1.00 MCAODC_14540 yeiH UPF0324 membrane protein YeiH 0.99 MCAODC_27540 hupB DNA-binding protein HU-beta low > 87
Escherichia coli BW25113 1.00 b2158 yeiH conserved inner membrane protein (NCBI) 1.00 b0440 hupB HU, DNA-binding transcriptional regulator, beta subunit (NCBI) low > 76
Escherichia coli ECOR27 1.00 NOLOHH_15065 yeiH UPF0324 membrane protein YeiH 0.99 NOLOHH_01250 hupB DNA-binding protein HU-beta low > 75
Escherichia coli ECOR38 1.00 HEPCGN_22755 yeiH UPF0324 membrane protein YeiH 0.99 HEPCGN_06930 hupB DNA-binding protein HU-beta low > 87
Escherichia fergusonii Becca 1.00 EFB2_01698 hypothetical protein 1.00 EFB2_03617 DNA-binding protein HU-beta low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS12635 YeiH family protein 0.99 ECOLIN_RS02640 nucleoid-associated protein HU-beta low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF3775 Putative membrane protein YeiH 0.98 GFF4356 DNA-binding protein HU-beta low > 78
Enterobacter sp. TBS_079 0.86 MPMX20_03129 hypothetical protein 0.96 MPMX20_01031 DNA-binding protein HU-beta low > 85
Enterobacter asburiae PDN3 0.85 EX28DRAFT_0398 conserved hypothetical integral membrane protein 0.96 EX28DRAFT_2530 Bacterial nucleoid DNA-binding protein low > 76
Klebsiella michiganensis M5al 0.83 BWI76_RS19695 membrane protein 0.96 BWI76_RS06540 DNA-binding protein HU-beta low > 92
Serratia liquefaciens MT49 0.61 IAI46_17220 YeiH family putative sulfate export transporter 0.95 IAI46_05025 DNA-binding protein HU-beta low > 86
Rahnella sp. WP5 0.59 EX31_RS19055 YeiH family putative sulfate export transporter 0.90 EX31_RS22260 DNA-binding protein HU-beta low > 89
Pantoea sp. MT58 0.53 IAI47_06670 YeiH family putative sulfate export transporter 0.86 IAI47_14640 DNA-binding protein HU-beta low > 76
Dickeya dadantii 3937 0.51 DDA3937_RS09255 YeiH family putative sulfate export transporter 0.90 DDA3937_RS05655 DNA-binding protein HU-beta low > 74
Erwinia tracheiphila SCR3 0.50 LU632_RS17300 YeiH family putative sulfate export transporter 0.86 LU632_RS18330 hupB DNA-binding protein HU-beta low > 74
Dickeya dianthicola ME23 0.50 DZA65_RS09585 YeiH family putative sulfate export transporter 0.90 DZA65_RS06025 DNA-binding protein HU-beta low > 75
Dickeya dianthicola 67-19 0.49 HGI48_RS09280 YeiH family putative sulfate export transporter 0.90 HGI48_RS05700 DNA-binding protein HU-beta low > 71
Pectobacterium carotovorum WPP14 0.48 HER17_RS12845 YeiH family protein 0.91 HER17_RS15835 DNA-binding protein HU-beta low > 75
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS21580 membrane protein 0.67 HSERO_RS12900 transcriptional regulator HU subunit alpha — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF332 Putative membrane protein YeiH 0.66 GFF3853 DNA-binding protein HU-beta 0.36 88
Variovorax sp. SCN45 0.42 GFF1741 UPF0324 inner membrane protein YeiH 0.66 GFF2853 DNA-binding protein HU-beta low > 127
Parabacteroides merdae CL09T00C40 0.39 HMPREF1078_RS00725 YeiH family protein 0.44 HMPREF1078_RS11630 HU family DNA-binding protein low > 61
Bacteroides thetaiotaomicron VPI-5482 0.37 BT1919 conserved hypothetical protein with a conserved domain (NCBI ptt file) 0.59 BT2830 DNA-binding protein HU-beta (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS15060 YeiH family putative sulfate export transporter 0.54 ABI39_RS06620 HU family DNA-binding protein low > 72
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_05208 conserved hypothetical integral membrane protein 0.70 H281DRAFT_00899 bacterial nucleoid protein Hbs — —
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS07240 YeiH family protein 0.71 QEN71_RS21970 HU family DNA-binding protein low > 153
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS11315 membrane protein 0.70 BPHYT_RS09465 transcriptional regulator — —
Dechlorosoma suillum PS 0.31 Dsui_2230 conserved hypothetical integral membrane protein 0.73 Dsui_2199 bacterial nucleoid DNA-binding protein low > 51
Paraburkholderia graminis OAS925 0.31 ABIE53_002342 putative integral membrane protein (TIGR00698 family) 0.70 ABIE53_002118 DNA-binding protein HU-beta low > 113
Pseudomonas putida KT2440 0.31 PP_3661 conserved membrane protein of unknown function, UPF0324 family 0.80 PP_2303 DNA binding regulator, beta subunit B — —
Ralstonia solanacearum GMI1000 0.30 RS_RS05520 YeiH family putative sulfate export transporter 0.62 RS_RS08660 HU family DNA-binding protein — —
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS10370 YeiH family protein 0.61 ABZR87_RS12780 HU family DNA-binding protein low > 80
Ralstonia solanacearum PSI07 0.29 RPSI07_RS18650 YeiH family putative sulfate export transporter 0.62 RPSI07_RS16140 HU family DNA-binding protein — —
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS13960 hypothetical protein 0.53 RR42_RS20390 DNA-binding protein — —
Ralstonia solanacearum UW163 0.28 UW163_RS12180 YeiH family putative sulfate export transporter 0.62 UW163_RS14645 HU family DNA-binding protein — —
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS14710 YeiH family putative sulfate export transporter 0.62 RALBFv3_RS01335 HU family DNA-binding protein — —
Rhodanobacter denitrificans FW104-10B01 0.20 LRK54_RS12830 YeiH family protein 0.66 LRK54_RS16740 HU family DNA-binding protein low > 59
Rhodanobacter sp. FW510-T8 0.19 OKGIIK_02225 Conserved hypothetical integral membrane protein 0.66 OKGIIK_08025 himA integration host factor subunit alpha — —
Dyella japonica UNC79MFTsu3.2 0.19 ABZR86_RS19775 YeiH family protein 0.66 ABZR86_RS07315 HU family DNA-binding protein — —
Pseudomonas fluorescens GW456-L13 0.19 PfGW456L13_4898 Inner membrane protein 0.73 PfGW456L13_2555 DNA-binding protein HU-beta — —
Pseudomonas fluorescens FW300-N1B4 0.19 Pf1N1B4_5992 Inner membrane protein 0.73 Pf1N1B4_3948 DNA-binding protein HU-beta — —
Rhodospirillum rubrum S1H 0.18 Rru_A0605 hypothetical protein (NCBI) 0.55 Rru_A1553 Histone-like DNA-binding protein (NCBI) — —
Pseudomonas fluorescens FW300-N2E3 0.18 AO353_21030 hypothetical protein 0.73 AO353_20190 DNA-binding protein HU — —
Rhodanobacter denitrificans MT42 0.18 LRK55_RS12530 putative sulfate exporter family transporter 0.66 LRK55_RS16465 HU family DNA-binding protein — —
Alteromonas macleodii MIT1002 0.18 MIT1002_03827 hypothetical protein 0.83 MIT1002_02756 hypothetical protein — —
Phocaeicola vulgatus CL09T03C04 0.17 HMPREF1058_RS04995 putative sulfate exporter family transporter 0.54 HMPREF1058_RS10500 HU family DNA-binding protein low > 67
Fusobacterium nucleatum SB010 0.17 HUW76_07425 YeiH family putative sulfate export transporter 0.36 HUW76_07000 HU family DNA-binding protein — —
Sinorhizobium meliloti 1021 0.17 SMa1737 hypothetical protein 0.53 SMc01906 histone-like protein — —
Azospirillum brasilense Sp245 0.15 AZOBR_RS32555 membrane protein 0.59 AZOBR_RS23140 transcriptional regulator — —
Shewanella oneidensis MR-1 0.14 SO4708 conserved hypothetical protein (NCBI ptt file) 0.85 SO1797 DNA-binding protein, HU family (NCBI ptt file) — —
Shewanella sp. ANA-3 0.14 Shewana3_4061 hypothetical protein (RefSeq) 0.85 Shewana3_2658 histone family protein DNA-binding protein (RefSeq) — —
Shewanella loihica PV-4 0.14 Shew_3668 hypothetical protein (RefSeq) 0.82 Shew_2505 histone family protein DNA-binding protein (RefSeq) — —
Desulfovibrio vulgaris Miyazaki F 0.14 DvMF_1255 hypothetical protein (RefSeq) 0.54 DvMF_0500 histone family protein DNA-binding protein (RefSeq) low > 51
Azospirillum sp. SherDot2 0.13 MPMX19_02876 hypothetical protein 0.60 MPMX19_01544 DNA-binding protein HU — —

Not shown: 6 genomes with orthologs for ECD_02087 only; 27 genomes with orthologs for ECD_00392 only