Conservation of cofitness between Dsui_1622 and Dsui_2462 in Dechlorosoma suillum PS

64 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dechlorosoma suillum PS 1.0 Dsui_1622 excinuclease ABC, A subunit 1.0 Dsui_2462 DNA repair protein RecO 0.95 2
Ralstonia sp. UNC404CL21Col 0.79 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.44 ABZR87_RS10215 DNA repair protein RecO low > 80
Ralstonia solanacearum UW163 0.78 UW163_RS02345 excinuclease ABC subunit UvrA 0.44 UW163_RS11960 DNA repair protein RecO — —
Ralstonia solanacearum IBSBF1503 0.78 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.44 RALBFv3_RS14495 DNA repair protein RecO low > 76
Ralstonia solanacearum GMI1000 0.78 RS_RS02080 excinuclease ABC subunit UvrA 0.45 RS_RS05275 DNA repair protein RecO low > 80
Ralstonia solanacearum PSI07 0.78 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.45 RPSI07_RS18965 DNA repair protein RecO low > 81
Herbaspirillum seropedicae SmR1 0.77 HSERO_RS19810 excinuclease ABC subunit A 0.44 HSERO_RS09670 DNA repair protein RecO 0.57 10
Cupriavidus basilensis FW507-4G11 0.77 RR42_RS02145 excinuclease ABC subunit A 0.43 RR42_RS14030 DNA recombination protein RecO 0.72 5
Pseudomonas putida KT2440 0.75 PP_0483 excinuclease (uvrABC system protein A) 0.26 PP_1435 DNA repair protein RecO — —
Pseudomonas stutzeri RCH2 0.75 Psest_3576 excinuclease ABC, A subunit 0.27 Psest_3090 DNA repair protein RecO 0.85 4
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_06855 ABC-ATPase UvrA 0.29 AO353_04500 DNA repair protein RecO 0.30 76
Pseudomonas sp. S08-1 0.75 OH686_15495 excinuclease ABC subunit A 0.25 OH686_20090 DNA repair protein RecO low > 80
Pseudomonas simiae WCS417 0.75 PS417_25395 excinuclease ABC subunit A 0.28 PS417_05200 DNA recombination protein RecO 0.27 27
Pseudomonas syringae pv. syringae B728a ΔmexB 0.75 Psyr_4520 Excinuclease ABC subunit A 0.26 Psyr_3949 DNA replication and repair protein RecO 0.85 3
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_1283 Excinuclease ABC subunit A 0.29 PfGW456L13_4838 DNA recombination and repair protein RecO 0.33 30
Pseudomonas syringae pv. syringae B728a 0.75 Psyr_4520 Excinuclease ABC subunit A 0.26 Psyr_3949 DNA replication and repair protein RecO 0.75 3
Pseudomonas fluorescens SBW25 0.75 PFLU_RS27025 excinuclease ABC subunit UvrA 0.27 PFLU_RS05270 DNA repair protein RecO low > 109
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS27025 excinuclease ABC subunit UvrA 0.27 PFLU_RS05270 DNA repair protein RecO low > 109
Pseudomonas sp. RS175 0.75 PFR28_03974 UvrABC system protein A 0.29 PFR28_03521 DNA repair protein RecO low > 88
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_2611 Excinuclease ABC subunit A 0.29 Pf1N1B4_890 DNA recombination and repair protein RecO 0.52 6
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_14785 ABC-ATPase UvrA 0.30 AO356_17505 DNA repair protein RecO 0.68 8
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_4888 Excinuclease ABC subunit A 0.30 Pf6N2E2_5428 DNA recombination and repair protein RecO 0.65 7
Pectobacterium carotovorum WPP14 0.73 HER17_RS03550 excinuclease ABC subunit UvrA 0.29 HER17_RS05825 DNA repair protein RecO low > 75
Marinobacter adhaerens HP15 0.72 HP15_406 excinuclease ABC, ATPase subunit (A) 0.34 HP15_786 DNA repair protein RecO 0.61 21
Pantoea sp. MT58 0.72 IAI47_17815 excinuclease ABC subunit UvrA 0.30 IAI47_04890 DNA repair protein RecO low > 76
Dickeya dianthicola 67-19 0.72 HGI48_RS17610 excinuclease ABC subunit UvrA 0.29 HGI48_RS15810 DNA repair protein RecO low > 71
Enterobacter asburiae PDN3 0.72 EX28DRAFT_4246 excinuclease ABC, A subunit 0.28 EX28DRAFT_0081 DNA replication and repair protein RecO low > 76
Dickeya dianthicola ME23 0.72 DZA65_RS18735 excinuclease ABC subunit UvrA 0.29 DZA65_RS16890 DNA repair protein RecO low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF1429 Excinuclease ABC subunit A 0.28 GFF2473 DNA recombination and repair protein RecO low > 78
Rahnella sp. WP5 0.72 EX31_RS11990 excinuclease ABC subunit UvrA 0.29 EX31_RS21845 DNA repair protein RecO low > 89
Escherichia coli Nissle 1917 0.72 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.28 ECOLIN_RS14520 DNA repair protein RecO — —
Dickeya dadantii 3937 0.72 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.29 DDA3937_RS15725 DNA repair protein RecO low > 74
Serratia liquefaciens MT49 0.72 IAI46_22905 excinuclease ABC subunit UvrA 0.29 IAI46_19540 DNA repair protein RecO 0.43 35
Escherichia coli ECRC101 0.72 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.28 MCAODC_11950 recO DNA repair protein RecO — —
Escherichia coli ECRC102 0.72 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.28 NIAGMN_19190 recO DNA repair protein RecO — —
Escherichia coli ECRC98 0.72 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.28 JDDGAC_25085 recO DNA repair protein RecO — —
Enterobacter sp. TBS_079 0.72 MPMX20_00276 UvrABC system protein A 0.25 MPMX20_03436 DNA repair protein RecO 0.37 37
Escherichia fergusonii Becca 0.72 EFB2_04533 UvrABC system protein A 0.28 EFB2_01331 DNA repair protein RecO low > 86
Escherichia coli ECRC99 0.72 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.28 KEDOAH_06800 recO DNA repair protein RecO — —
Escherichia coli BW25113 0.72 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.28 b2565 recO DNA repair protein RecO (NCBI) 0.75 5
Escherichia coli ECRC62 0.72 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.28 BNILDI_11895 recO DNA repair protein RecO — —
Escherichia coli ECOR27 0.72 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.28 NOLOHH_13095 recO DNA repair protein RecO low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_03983 UvrABC system protein A 0.28 OHPLBJKB_01142 DNA repair protein RecO low > 73
Escherichia coli ECOR38 0.72 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.28 HEPCGN_20565 recO DNA repair protein RecO low > 85
Escherichia coli ECRC101 0.72 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.28 OKFHMN_21420 recO DNA repair protein RecO — —
Kangiella aquimarina DSM 16071 0.72 B158DRAFT_0885 excinuclease ABC, A subunit 0.26 B158DRAFT_2189 DNA replication and repair protein RecO 0.78 4
Escherichia coli BL21 0.72 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.28 ECD_02459 gap repair protein 0.62 26
Klebsiella michiganensis M5al 0.71 BWI76_RS01950 excinuclease ABC subunit A 0.29 BWI76_RS21310 DNA repair protein RecO low > 92
Erwinia tracheiphila SCR3 0.71 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.31 LU632_RS15375 recO DNA repair protein RecO low > 74
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_02080 UvrABC system protein A 0.26 CSW01_12445 DNA repair protein RecO low > 62
Xanthomonas campestris pv. campestris strain 8004 0.71 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.25 Xcc-8004.3671.1 DNA recombination and repair protein RecO low > 74
Shewanella oneidensis MR-1 0.71 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.20 SO1350 recO DNA repair protein RecO (NCBI ptt file) 0.49 8
Shewanella sp. ANA-3 0.71 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.21 Shewana3_3024 DNA repair protein RecO (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.70 MIT1002_00179 Excinuclease ABC subunit A 0.25 MIT1002_00790 Recombination protein O low > 70
Shewanella amazonensis SB2B 0.70 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.27 Sama_0882 DNA repair protein RecO (RefSeq) 0.61 10
Dyella japonica UNC79MFTsu3.2 0.70 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.30 ABZR86_RS07140 DNA repair protein RecO 0.89 6
Variovorax sp. SCN45 0.70 GFF4944 Excinuclease ABC subunit A 0.22 GFF3872 DNA recombination and repair protein RecO low > 127
Shewanella loihica PV-4 0.70 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.23 Shew_1056 DNA repair protein RecO (RefSeq) 0.84 8
Hydrogenophaga sp. GW460-11-11-14-LB1 0.70 GFF2755 Excinuclease ABC subunit A 0.24 GFF3348 DNA recombination and repair protein RecO low > 90
Variovorax sp. OAS795 0.70 ABID97_RS04340 excinuclease ABC subunit UvrA 0.22 ABID97_RS08375 DNA repair protein RecO low > 91
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS15210 excinuclease ABC subunit UvrA 0.30 LRK54_RS16980 DNA repair protein RecO low > 59
Rhodanobacter denitrificans MT42 0.69 LRK55_RS14925 excinuclease ABC subunit UvrA 0.30 LRK55_RS16695 DNA repair protein RecO low > 63
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.30 OKGIIK_07860 recO DNA repair protein RecO low > 52
Acidovorax sp. GW101-3H11 0.69 Ac3H11_4387 Excinuclease ABC subunit A 0.18 Ac3H11_1564 DNA recombination and repair protein RecO 0.41 21
Acinetobacter radioresistens SK82 0.65 MPMX26_02892 UvrABC system protein A 0.21 MPMX26_02153 DNA repair protein RecO low > 36

Not shown: 38 genomes with orthologs for Dsui_1622 only; 1 genomes with orthologs for Dsui_2462 only