Conservation of cofitness between Dsui_2673 and Dsui_2197 in Dechlorosoma suillum PS

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dechlorosoma suillum PS 1.0 Dsui_2673 hypothetical protein 1.0 Dsui_2197 endopeptidase Clp ATP-binding regulatory subunit ClpX 0.52 13
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_0971 Uncharacterized protein conserved in bacteria 0.73 B158DRAFT_1037 endopeptidase Clp ATP-binding regulatory subunit (clpX) — —
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_04385 RnfH family protein 0.73 CSW01_09610 ATP-dependent Clp protease ATP-binding subunit ClpX — —
Enterobacter asburiae PDN3 0.52 EX28DRAFT_2721 Uncharacterized protein conserved in bacteria 0.73 EX28DRAFT_2533 endopeptidase Clp ATP-binding regulatory subunit (clpX) — —
Dickeya dadantii 3937 0.51 DDA3937_RS04315 RnfH family protein 0.73 DDA3937_RS05645 ATP-dependent protease ATP-binding subunit ClpX low > 74
Escherichia coli Nissle 1917 0.50 ECOLIN_RS14785 RnfH family protein 0.74 ECOLIN_RS02630 ATP-dependent protease ATP-binding subunit ClpX low > 55
Escherichia fergusonii Becca 0.50 EFB2_01275 Persistence and stress-resistance antitoxin PasI 0.74 EFB2_03619 ATP-dependent Clp protease ATP-binding subunit ClpX low > 86
Klebsiella michiganensis M5al 0.50 BWI76_RS21570 RnfH family protein 0.74 BWI76_RS06530 ATP-dependent Clp protease ATP-binding subunit ClpX low > 92
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS06530 RnfH family protein 0.80 QEN71_RS21980 ATP-dependent Clp protease ATP-binding subunit ClpX — —
Enterobacter sp. TBS_079 0.50 MPMX20_03488 Persistence and stress-resistance antitoxin PasI 0.73 MPMX20_01029 ATP-dependent Clp protease ATP-binding subunit ClpX low > 85
Escherichia coli BL21 0.50 ECD_02506 UPF0125 family protein 0.74 ECD_00389 ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease low > 61
Escherichia coli BW25113 0.50 b2618 b2618 orf, hypothetical protein (VIMSS) 0.74 b0438 clpX ATP-dependent protease ATP-binding subunit (NCBI) low > 76
Escherichia coli ECOR38 0.50 HEPCGN_20255 rnfH RnfH family protein 0.74 HEPCGN_06945 clpX ATP-dependent protease ATP-binding subunit ClpX low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_01089 hypothetical protein 0.74 OHPLBJKB_03235 ATP-dependent Clp protease ATP-binding subunit ClpX low > 73
Paraburkholderia graminis OAS925 0.50 ABIE53_002480 putative ubiquitin-RnfH superfamily antitoxin RatB of RatAB toxin-antitoxin module 0.79 ABIE53_002116 ATP-dependent Clp protease ATP-binding subunit ClpX low > 113
Serratia liquefaciens MT49 0.50 IAI46_19645 RnfH family protein 0.73 IAI46_05015 ATP-dependent protease ATP-binding subunit ClpX low > 86
Dickeya dianthicola ME23 0.50 DZA65_RS04225 RnfH family protein 0.72 DZA65_RS06015 ATP-dependent protease ATP-binding subunit ClpX — —
Escherichia coli ECRC62 0.50 BNILDI_11610 rnfH RnfH family protein 0.74 BNILDI_22680 clpX ATP-dependent protease ATP-binding subunit ClpX low > 75
Dickeya dianthicola 67-19 0.50 HGI48_RS04310 RnfH family protein 0.72 HGI48_RS05690 ATP-dependent protease ATP-binding subunit ClpX — —
Escherichia coli ECOR27 0.50 NOLOHH_12805 rnfH RnfH family protein 0.74 NOLOHH_01265 clpX ATP-dependent protease ATP-binding subunit ClpX — —
Pectobacterium carotovorum WPP14 0.49 HER17_RS17430 RnfH family protein 0.73 HER17_RS15845 ATP-dependent protease ATP-binding subunit ClpX — —
Escherichia coli ECRC102 0.49 NIAGMN_18905 rnfH RnfH family protein 0.74 NIAGMN_06385 clpX ATP-dependent protease ATP-binding subunit ClpX — —
Escherichia coli ECRC98 0.49 JDDGAC_24800 rnfH RnfH family protein 0.74 JDDGAC_11985 clpX ATP-dependent protease ATP-binding subunit ClpX low > 86
Escherichia coli ECRC101 0.49 MCAODC_11660 rnfH RnfH family protein 0.74 MCAODC_27555 clpX ATP-dependent protease ATP-binding subunit ClpX low > 87
Escherichia coli ECRC100 0.49 OKFHMN_21135 rnfH RnfH family protein 0.74 OKFHMN_08330 clpX ATP-dependent protease ATP-binding subunit ClpX — —
Paraburkholderia bryophila 376MFSha3.1 0.49 H281DRAFT_00632 hypothetical protein 0.79 H281DRAFT_00897 ATP-dependent Clp protease ATP-binding subunit ClpX — —
Escherichia coli ECRC99 0.49 KEDOAH_07085 rnfH RnfH family protein 0.74 KEDOAH_19635 clpX ATP-dependent protease ATP-binding subunit ClpX — —
Alteromonas macleodii MIT1002 0.49 MIT1002_01808 hypothetical protein 0.74 MIT1002_02759 ATP-dependent Clp protease ATP-binding subunit ClpX — —
Pantoea sp. MT58 0.48 IAI47_04800 RnfH family protein 0.74 IAI47_14650 ATP-dependent protease ATP-binding subunit ClpX — —
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS05690 RnfH family protein 0.75 ABZR86_RS07325 ATP-dependent Clp protease ATP-binding subunit ClpX — —
Burkholderia phytofirmans PsJN 0.48 BPHYT_RS12030 protein RnfH 0.79 BPHYT_RS09455 ATP-dependent Clp protease ATP-binding subunit ClpX — —
Rahnella sp. WP5 0.47 EX31_RS21750 RnfH family protein 0.73 EX31_RS22250 ATP-dependent protease ATP-binding subunit ClpX 0.69 11
Erwinia tracheiphila SCR3 0.45 LU632_RS17015 RnfH family protein 0.73 LU632_RS18340 clpX ATP-dependent protease ATP-binding subunit ClpX — —
Shewanella loihica PV-4 0.44 Shew_1270 hypothetical protein (RefSeq) 0.73 Shew_2507 clpX ATP-dependent protease ATP-binding subunit (RefSeq) — —
Shewanella amazonensis SB2B 0.44 Sama_2386 hypothetical protein (RefSeq) 0.74 Sama_1225 clpX ATP-dependent protease ATP-binding subunit ClpX (RefSeq) — —
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS11010 RnfH 0.80 HSERO_RS12910 ATP-dependent protease — —
Pseudomonas stutzeri RCH2 0.42 Psest_0959 Uncharacterized protein conserved in bacteria 0.77 Psest_2286 endopeptidase Clp ATP-binding regulatory subunit (clpX) — —
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_1181 UPF0125 protein yfjF 0.78 Pf1N1B4_3946 ATP-dependent Clp protease ATP-binding subunit ClpX — —
Magnetospirillum magneticum AMB-1 0.41 AMB_RS13180 protein rnfH 0.70 AMB_RS14040 ATP-dependent Clp protease ATP-binding subunit ClpX — —
Shewanella sp. ANA-3 0.41 Shewana3_2950 hypothetical protein (RefSeq) 0.73 Shewana3_2660 clpX ATP-dependent protease ATP-binding subunit ClpX (RefSeq) low > 73
Shewanella oneidensis MR-1 0.40 SO1475 conserved hypothetical protein (NCBI ptt file) 0.73 SO1795 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX (NCBI ptt file) low > 76
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS11765 protein RnfH 0.80 RR42_RS09025 Clp protease ATP-binding protein — —
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_07525 protein RnfH 0.78 AO356_01745 ATP-dependent Clp protease ATP-binding subunit ClpX — —
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS25925 RnfH family protein 0.78 PFLU_RS19165 ATP-dependent Clp protease ATP-binding subunit ClpX low > 109
Pseudomonas fluorescens SBW25 0.38 PFLU_RS25925 RnfH family protein 0.78 PFLU_RS19165 ATP-dependent Clp protease ATP-binding subunit ClpX low > 109
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_07365 RnfH family protein 0.74 OKGIIK_08035 clpX ATP-dependent Clp protease ATP-binding subunit ClpX — —
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_5109 UPF0125 protein yfjF 0.78 PfGW456L13_2553 ATP-dependent Clp protease ATP-binding subunit ClpX low > 87
Pseudomonas simiae WCS417 0.37 PS417_24085 protein RnfH 0.78 PS417_17230 Clp protease ATP-binding protein — —
Pseudomonas sp. S08-1 0.36 OH686_17035 UPF0125 protein RatB 0.77 OH686_03640 ATP-dependent Clp protease, ATP-binding subunit ClpX low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_4200 Protein of unknown function UPF0125 0.79 Psyr_1748 ATP-dependent Clp protease ATP-binding subunit ClpX low > 86
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_4200 Protein of unknown function UPF0125 0.79 Psyr_1748 ATP-dependent Clp protease ATP-binding subunit ClpX low > 86
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_05675 protein RnfH 0.78 AO353_20180 ATP-dependent Clp protease ATP-binding subunit ClpX — —
Marinobacter adhaerens HP15 0.34 HP15_3087 protein belonging to uncharacterized protein family UPF0125 0.73 HP15_2184 ATP-dependent Clp protease ATP-binding subunit ClpX — —
Rhodanobacter denitrificans MT42 0.34 LRK55_RS17790 RnfH family protein 0.74 LRK55_RS16455 ATP-dependent Clp protease ATP-binding subunit ClpX low > 63
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS17935 RnfH family protein 0.74 LRK54_RS16730 ATP-dependent Clp protease ATP-binding subunit ClpX low > 59
Acinetobacter radioresistens SK82 0.33 MPMX26_02409 hypothetical protein 0.67 MPMX26_00409 ATP-dependent Clp protease ATP-binding subunit ClpX low > 36
Lysobacter sp. OAE881 0.28 ABIE51_RS11670 RnfH family protein 0.75 ABIE51_RS14150 ATP-dependent Clp protease ATP-binding subunit ClpX low > 62
Xanthomonas campestris pv. campestris strain 8004 0.26 Xcc-8004.3435.1 UPF0125 protein yfjF 0.75 Xcc-8004.4047.1 ATP-dependent Clp protease ATP-binding subunit ClpX — —
Castellaniella sp019104865 MT123 0.25 ABCV34_RS04000 RnfH family protein 0.72 ABCV34_RS05130 ATP-dependent Clp protease ATP-binding subunit ClpX — —

Not shown: 0 genomes with orthologs for Dsui_2673 only; 42 genomes with orthologs for Dsui_2197 only