Conservation of cofitness between CSW01_01485 and CSW01_13285 in Vibrio cholerae E7946 ATCC 55056

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01485 transcriptional regulator 1.0 CSW01_13285 ribulose-phosphate 3-epimerase 0.96 7
Erwinia amylovora T8 0.56 OLJFJH_04280 gluconate operon transcriptional repressor GntR 0.76 OLJFJH_04075 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola ME23 0.55 DZA65_RS20970 gluconate operon transcriptional repressor GntR 0.76 DZA65_RS20745 ribulose-phosphate 3-epimerase — —
Dickeya dadantii 3937 0.55 DDA3937_RS19785 gluconate operon transcriptional repressor GntR 0.75 DDA3937_RS19530 ribulose-phosphate 3-epimerase — —
Dickeya dianthicola 67-19 0.55 HGI48_RS19900 gluconate operon transcriptional repressor GntR 0.76 HGI48_RS19660 ribulose-phosphate 3-epimerase — —
Rahnella sp. WP5 0.54 EX31_RS05060 gluconate operon transcriptional repressor GntR 0.74 EX31_RS04705 ribulose-phosphate 3-epimerase — —
Erwinia tracheiphila HP pepo 2.2 0.54 IJEDHG_08040 gntR gluconate operon transcriptional repressor GntR 0.76 IJEDHG_12050 rpe ribulose-phosphate 3-epimerase — —
Serratia liquefaciens MT49 0.54 IAI46_23965 gluconate operon transcriptional repressor GntR 0.76 IAI46_23685 ribulose-phosphate 3-epimerase low > 86
Erwinia tracheiphila SCR3 0.53 LU632_RS19160 gntR gluconate operon transcriptional repressor GntR 0.76 LU632_RS22850 rpe ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC101 0.52 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR 0.77 MCAODC_07660 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC100 0.52 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR 0.77 OKFHMN_17130 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC99 0.52 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR 0.77 KEDOAH_11010 dam adenine-specific DNA-methyltransferase — —
Escherichia coli ECRC62 0.52 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR 0.77 BNILDI_02600 dam adenine-specific DNA-methyltransferase — —
Escherichia fergusonii Becca 0.52 EFB2_00382 HTH-type transcriptional regulator GntR 0.77 EFB2_00442 Ribulose-phosphate 3-epimerase — —
Escherichia coli Nissle 1917 0.52 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR 0.77 ECOLIN_RS19345 ribulose-phosphate 3-epimerase low > 55
Escherichia coli ECOR38 0.52 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR 0.77 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase low > 88
Escherichia coli ECRC102 0.52 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR 0.77 NIAGMN_14900 dam adenine-specific DNA-methyltransferase — —
Escherichia coli BW25113 0.52 b3438 gntR DNA-binding transcriptional repressor (NCBI) 0.77 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) low > 76
Pectobacterium carotovorum WPP14 0.52 HER17_RS01450 gluconate operon transcriptional repressor GntR 0.76 HER17_RS01795 ribulose-phosphate 3-epimerase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_00264 HTH-type transcriptional regulator GntR 0.77 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase — —
Escherichia coli ECRC98 0.52 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR 0.77 JDDGAC_20760 dam adenine-specific DNA-methyltransferase — —
Pantoea sp. MT58 0.52 IAI47_01650 gluconate operon transcriptional repressor GntR 0.76 IAI47_01910 ribulose-phosphate 3-epimerase — —
Enterobacter sp. TBS_079 0.52 MPMX20_04319 HTH-type transcriptional regulator GntR 0.77 MPMX20_04275 Ribulose-phosphate 3-epimerase low > 85
Klebsiella pneumoniae MKP103 0.51 KDGMDA_07120 gluconate operon transcriptional repressor GntR 0.78 KDGMDA_06895 ribulose-phosphate 3-epimerase — —
Escherichia coli ECOR27 0.51 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR 0.77 NOLOHH_08920 dam adenine-specific DNA-methyltransferase — —
Escherichia coli BL21 0.51 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor 0.77 ECD_03238 D-ribulose-5-phosphate 3-epimerase low > 61
Enterobacter asburiae PDN3 0.51 EX28DRAFT_4274 transcriptional regulator, LacI family 0.78 EX28DRAFT_4156 ribulose-phosphate 3-epimerase low > 76
Klebsiella michiganensis M5al 0.51 BWI76_RS26245 transcriptional regulator 0.77 BWI76_RS26070 ribulose-phosphate 3-epimerase — —
Pantoea agglomerans CFBP13505 P0401 0.50 PagCFBP13505_RS18155 gluconate operon transcriptional repressor GntR 0.76 PagCFBP13505_RS21685 ribulose-phosphate 3-epimerase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.49 GFF570 Gluconate utilization system Gnt-I transcriptional repressor 0.76 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 78
Pseudomonas aeruginosa PA14 0.36 IKLFDK_11375 LacI family DNA-binding transcriptional regulator GntR 0.70 IKLFDK_22375 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor 0.71 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas fluorescens SBW25 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas stutzeri RCH2 0.34 Psest_2126 Transcriptional regulators 0.71 Psest_3652 ribulose-phosphate 3-epimerase — —
Pseudomonas lactucae CFBP13502 0.34 GEMAOFIL_04536 HTH-type transcriptional regulator GntR 0.71 GEMAOFIL_05267 Ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator 0.71 PFLU_RS27390 ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor 0.70 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor 0.71 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Pseudomonas sp. RS175 0.34 PFR28_00593 HTH-type transcriptional regulator GntR 0.70 PFR28_04049 Ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2C3 0.34 AO356_05065 LacI family transcriptional regulator 0.70 AO356_14410 ribulose phosphate epimerase — —
Pseudomonas sp. SVBP6 0.34 COO64_RS25590 LacI family DNA-binding transcriptional regulator 0.71 COO64_RS22440 rpe ribulose-phosphate 3-epimerase low > 93
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS05460 LacI family transcription regulator 0.67 HSERO_RS19425 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. DMC3 0.33 GFF5268 HTH-type transcriptional regulator GntR 0.69 GFF22 Ribulose-phosphate 3-epimerase — —
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_03255 LacI family transcriptional regulator 0.70 AO353_07240 ribulose phosphate epimerase — —
Pseudomonas simiae WCS417 0.33 PS417_21990 LacI family transcriptional regulator 0.71 PS417_25735 ribulose-phosphate 3-epimerase — —
Pseudomonas segetis P6 0.33 MPMX49_02373 HTH-type transcriptional regulator GntR 0.71 MPMX49_00887 Ribulose-phosphate 3-epimerase — —
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS00410 LacI family transcription regulator 0.67 BPHYT_RS17380 ribulose-phosphate 3-epimerase low > 109
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_3336 transcriptional regulator, LacI family 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_3336 transcriptional regulator, LacI family 0.71 Psyr_4611 ribulose-5-phosphate 3-epimerase — —
Alteromonas macleodii MIT1002 0.31 MIT1002_03475 Gluconate utilization system GNT-I transcriptional repressor 0.74 MIT1002_00441 Ribulose-phosphate 3-epimerase — —
Azospirillum brasilense Sp245 0.31 AZOBR_RS15720 LacI family transcription regulator 0.45 AZOBR_RS06755 ribulose-phosphate 3-epimerase — —
Pseudomonas sp. BP01 0.31 JOY50_RS23605 LacI family DNA-binding transcriptional regulator 0.71 JOY50_RS18210 rpe ribulose-phosphate 3-epimerase — —
Pseudomonas putida KT2440 0.31 PP_3415 Transcriptional regulator, LacI family 0.71 PP_0415 ribulose-5-phosphate 3-epimerase — —
Xanthobacter sp. DMC5 0.31 GFF1533 HTH-type transcriptional regulator GntR 0.57 GFF2441 Ribulose-phosphate 3-epimerase — —
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_05920 transcriptional regulator, LacI family 0.66 H281DRAFT_05717 ribulose-5-phosphate 3-epimerase low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF5509 Gluconate utilization system Gnt-I transcriptional repressor 0.60 GFF2197 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 90
Variovorax sp. SCN45 0.30 GFF7257 KEGG: LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor 0.59 GFF6246 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) low > 127
Sinorhizobium meliloti 1021 0.29 SM_b20667 LacI family transcriptional regulator 0.44 SMc00511 D-ribulose-5-phosphate 3-epimerase low > 103
Azospirillum sp. SherDot2 0.29 MPMX19_05332 HTH-type transcriptional regulator GntR 0.56 MPMX19_02946 Ribulose-phosphate 3-epimerase low > 112
Acidovorax sp. GW101-3H11 0.29 Ac3H11_3230 Gluconate utilization system Gnt-I transcriptional repressor 0.57 Ac3H11_757 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) — —
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS13585 LacI family DNA-binding transcriptional regulator 0.66 QEN71_RS27540 ribulose-phosphate 3-epimerase — —
Variovorax sp. OAS795 0.29 ABID97_RS01205 LacI family DNA-binding transcriptional regulator 0.59 ABID97_RS04905 ribulose-phosphate 3-epimerase — —
Phaeobacter inhibens DSM 17395 0.28 PGA1_c33870 putative HTH-type transcriptional regulator GntR 0.42 PGA1_c04170 ribulose-phosphate 3-epimerase Rpe — —
Agrobacterium fabrum C58 0.28 Atu4685 LacI family transcriptional regulator 0.45 Atu1839 ribulose-phosphate 3-epimerase — —
Dinoroseobacter shibae DFL-12 0.27 Dshi_3322 transcriptional regulator, LacI family (RefSeq) 0.41 Dshi_3006 Ribulose-phosphate 3-epimerase (RefSeq) — —
Ralstonia sp. UNC404CL21Col 0.26 ABZR87_RS18255 LacI family DNA-binding transcriptional regulator 0.64 ABZR87_RS02130 ribulose-phosphate 3-epimerase — —
Castellaniella sp019104865 MT123 0.26 ABCV34_RS12285 LacI family DNA-binding transcriptional regulator 0.59 ABCV34_RS10270 ribulose-phosphate 3-epimerase — —
Cupriavidus basilensis FW507-4G11 0.26 RR42_RS22645 GntR family transcriptional regulator 0.68 RR42_RS18285 ribulose-phosphate 3-epimerase — —
Ralstonia solanacearum GMI1000 0.26 RS_RS24865 LacI family DNA-binding transcriptional regulator 0.63 RS_RS14420 ribulose-phosphate 3-epimerase — —
Ralstonia solanacearum PSI07 0.26 RPSI07_RS07575 LacI family DNA-binding transcriptional regulator 0.64 RPSI07_RS10765 ribulose-phosphate 3-epimerase — —
Rhizobium sp. OAE497 0.25 ABIE40_RS04445 LacI family DNA-binding transcriptional regulator 0.44 ABIE40_RS10105 ribulose-phosphate 3-epimerase — —
Ralstonia solanacearum IBSBF1503 0.24 RALBFv3_RS16125 GntR family transcriptional regulator 0.64 RALBFv3_RS06475 ribulose-phosphate 3-epimerase — —
Ralstonia solanacearum UW163 0.24 UW163_RS16860 GntR family transcriptional regulator 0.64 UW163_RS07150 ribulose-phosphate 3-epimerase — —

Not shown: 0 genomes with orthologs for CSW01_01485 only; 47 genomes with orthologs for CSW01_13285 only