| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_00480 | | MATE family efflux transporter | 1.0 | CSW01_12820 | | ribosome hibernation promoting factor | 0.43 | 12 |
| Shewanella amazonensis SB2B | 0.42 | Sama_3501 | | DNA-damage-inducible protein F (RefSeq) | 0.64 | Sama_3089 | | ribosomal subunit interface protein (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.41 | SO4617 | dinF | DNA-damage-inducible protein F (NCBI ptt file) | 0.56 | SO3962 | yfiA-3 | ribosomal subunit interface protein (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.41 | Shew_0107 | | MATE efflux family protein (RefSeq) | 0.59 | Shew_3312 | | sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) | low | > 60 |
| Serratia liquefaciens MT49 | 0.40 | IAI46_23000 | | MATE family efflux transporter DinF | 0.71 | IAI46_22475 | | ribosome hibernation promoting factor | low | > 87 |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_4268 | | putative efflux protein, MATE family | 0.63 | EX28DRAFT_3257 | | ribosomal subunit interface protein | low | > 76 |
| Shewanella sp. ANA-3 | 0.39 | Shewana3_4001 | | MATE efflux family protein (RefSeq) | 0.58 | Shewana3_0671 | | sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) | low | > 73 |
| Escherichia coli BW25113 | 0.39 | b4044 | dinF | DNA-damage-inducible SOS response protein (NCBI) | 0.62 | b3203 | yhbH | predicted ribosome-associated, sigma 54 modulation protein (NCBI) | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.39 | GFF1413 | | DNA-damage-inducible protein F | 0.63 | GFF2947 | | Ribosome hibernation protein YhbH | low | > 78 |
| Escherichia coli BL21 | 0.39 | ECD_03916 | | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein | 0.62 | ECD_03068 | | ribosome hibernation promoting factor HPF; stabilizes 100S dimers | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.39 | OHPLBJKB_03999 | | DNA damage-inducible protein F | 0.62 | OHPLBJKB_00497 | | Ribosome hibernation promoting factor | low | > 74 |
| Escherichia coli ECOR27 | 0.39 | NOLOHH_05215 | dinF | MATE family efflux transporter DinF | 0.62 | NOLOHH_09735 | | Ribosome hibernation promoting factor | low | > 76 |
| Escherichia coli ECRC62 | 0.39 | BNILDI_06305 | dinF | MATE family efflux transporter DinF | 0.62 | BNILDI_01800 | | Ribosome hibernation promoting factor | low | > 75 |
| Pantoea sp. MT58 | 0.38 | IAI47_17885 | | MATE family efflux transporter DinF | 0.64 | IAI47_17190 | | ribosome hibernation promoting factor | 0.28 | 28 |
| Escherichia coli ECRC98 | 0.38 | JDDGAC_16685 | dinF | MATE family efflux transporter DinF | 0.62 | JDDGAC_21560 | | Ribosome hibernation promoting factor | low | > 87 |
| Escherichia coli ECRC101 | 0.38 | MCAODC_03560 | dinF | MATE family efflux transporter DinF | 0.62 | MCAODC_08455 | | Ribosome hibernation promoting factor | low | > 87 |
| Enterobacter sp. TBS_079 | 0.38 | MPMX20_00260 | | DNA damage-inducible protein F | 0.65 | MPMX20_04109 | | Ribosome hibernation promoting factor | low | > 85 |
| Escherichia coli ECRC99 | 0.38 | KEDOAH_15100 | dinF | MATE family efflux transporter DinF | 0.62 | KEDOAH_10215 | | Ribosome hibernation promoting factor | — | — |
| Escherichia coli ECRC102 | 0.38 | NIAGMN_10810 | dinF | MATE family efflux transporter DinF | 0.62 | NIAGMN_15695 | | Ribosome hibernation promoting factor | low | > 80 |
| Escherichia coli ECRC100 | 0.38 | OKFHMN_13060 | dinF | MATE family efflux transporter DinF | 0.62 | OKFHMN_17935 | | Ribosome hibernation promoting factor | low | > 79 |
| Pantoea agglomerans CFBP13505 P0401 | 0.38 | PagCFBP13505_RS21210 | | MATE family efflux transporter DinF | 0.64 | PagCFBP13505_RS09355 | | ribosome hibernation promoting factor | low | > 74 |
| Rahnella sp. WP5 | 0.38 | EX31_RS11850 | | MATE family efflux transporter DinF | 0.66 | EX31_RS12395 | | ribosome hibernation promoting factor | low | > 89 |
| Klebsiella michiganensis M5al | 0.38 | BWI76_RS01880 | | MATE family efflux transporter | 0.67 | BWI76_RS25270 | | ribosome hibernation promoting factor | low | > 92 |
| Escherichia fergusonii Becca | 0.38 | EFB2_04559 | | DNA damage-inducible protein F | 0.62 | EFB2_00620 | | Ribosome hibernation promoting factor | low | > 86 |
| Escherichia coli Nissle 1917 | 0.38 | ECOLIN_RS23340 | | MATE family efflux transporter DinF | 0.62 | ECOLIN_RS18430 | | ribosome hibernation promoting factor | low | > 55 |
| Klebsiella pneumoniae MKP103 | 0.38 | KDGMDA_10335 | | MATE family efflux transporter DinF | 0.66 | KDGMDA_06085 | | ribosome hibernation promoting factor | low | > 95 |
| Escherichia coli ECOR38 | 0.37 | HEPCGN_11580 | dinF | MATE family efflux transporter DinF | 0.62 | HEPCGN_16810 | | Ribosome hibernation promoting factor | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.37 | Pf6N2E2_3500 | | DNA-damage-inducible protein F | 0.55 | Pf6N2E2_3268 | | Ribosome hibernation protein YhbH | low | > 103 |
| Pseudomonas sp. DMC3 | 0.37 | GFF3325 | | DNA damage-inducible protein F | 0.58 | GFF1827 | | Ribosome hibernation promoting factor | low | > 89 |
| Marinobacter adhaerens HP15 | 0.37 | HP15_3770 | | MATE efflux family protein | 0.67 | HP15_2443 | | sigma 54 modulation protein/ribosomal protein S30EA | low | > 73 |
| Pseudomonas fluorescens FW300-N1B4 | 0.37 | Pf1N1B4_1292 | | DNA-damage-inducible protein F | 0.55 | Pf1N1B4_1081 | | Ribosome hibernation protein YhbH | low | > 87 |
| Kangiella aquimarina DSM 16071 | 0.36 | B158DRAFT_0674 | | putative efflux protein, MATE family | 0.66 | B158DRAFT_2079 | | ribosomal subunit interface protein | low | > 40 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.36 | Psyr_4384 | | Multi antimicrobial extrusion protein MatE | 0.53 | Psyr_4148 | | sigma 54 modulation protein / SSU ribosomal protein S30P | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.36 | Psyr_4384 | | Multi antimicrobial extrusion protein MatE | 0.53 | Psyr_4148 | | sigma 54 modulation protein / SSU ribosomal protein S30P | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.36 | PfGW456L13_40 | | DNA-damage-inducible protein F | 0.55 | PfGW456L13_5015 | | Ribosome hibernation protein YhbH | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.36 | AO353_13735 | | MATE family efflux transporter | 0.55 | AO353_05185 | | hypothetical protein | low | > 101 |
| Bacteroides ovatus ATCC 8483 | 0.35 | BACOVA_03104 | | MATE efflux family protein | 0.27 | BACOVA_01049 | | hypothetical protein | low | > 96 |
| Phocaeicola vulgatus CL09T03C04 | 0.35 | HMPREF1058_RS13880 | | MATE family efflux transporter | 0.33 | HMPREF1058_RS09440 | | ribosome-associated translation inhibitor RaiA | low | > 67 |
| Bacteroides stercoris CC31F | 0.35 | HMPREF1181_RS09420 | | MATE family efflux transporter | 0.27 | HMPREF1181_RS00620 | | ribosome-associated translation inhibitor RaiA | low | > 56 |
| Erwinia amylovora T8 | 0.35 | OLJFJH_03575 | | MATE family efflux transporter DinF | 0.66 | OLJFJH_07065 | | ribosome hibernation promoting factor | low | > 58 |
| Pseudomonas fluorescens FW300-N2C3 | 0.35 | AO356_08140 | | MATE family efflux transporter | 0.55 | AO356_07040 | | hypothetical protein | low | > 104 |
| Phocaeicola dorei CL03T12C01 | 0.35 | ABI39_RS09485 | | MATE family efflux transporter | 0.33 | ABI39_RS03830 | | ribosome-associated translation inhibitor RaiA | low | > 72 |
| Pseudomonas stutzeri RCH2 | 0.34 | Psest_3364 | | putative efflux protein, MATE family | 0.59 | Psest_3314 | | ribosomal subunit interface protein | low | > 67 |
| Pseudomonas simiae WCS417 | 0.34 | PS417_03010 | | XRE family transcriptional regulator | 0.54 | PS417_04340 | | ribosome hibernation promoting factor HPF | low | > 88 |
| Pseudomonas orientalis W4I3 | 0.34 | QF045_RS06045 | | MATE family efflux transporter | 0.54 | QF045_RS07330 | | ribosome-associated translation inhibitor RaiA | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.34 | BT2241 | | DNA-damage-inducible protein F (NCBI ptt file) | 0.25 | BT2741 | | sigma-54 modulation protein (NCBI ptt file) | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.34 | ABZR87_RS22695 | | MATE family efflux transporter | 0.38 | ABZR87_RS07055 | | ribosome-associated translation inhibitor RaiA | low | > 80 |
| Alteromonas macleodii MIT1002 | 0.34 | MIT1002_04023 | | DNA-damage-inducible protein F | 0.64 | MIT1002_00826 | | Ribosome hibernation promoting factor | low | > 70 |
| Pseudomonas putida KT2440 | 0.34 | PP_0569 | | MATE efflux family protein | 0.55 | PP_0951 | | Ribosome hibernation promoting factor | low | > 96 |
| Pseudomonas lactucae CFBP13502 | 0.34 | GEMAOFIL_00834 | | DNA damage-inducible protein F | 0.54 | GEMAOFIL_01074 | | Ribosome hibernation promoting factor | low | > 96 |
| Pseudomonas sp. BP01 | 0.33 | JOY50_RS23180 | | MATE family efflux transporter | 0.57 | JOY50_RS11125 | hpf | ribosome hibernation-promoting factor, HPF/YfiA family | low | > 84 |
| Ralstonia solanacearum PSI07 | 0.33 | RPSI07_RS01180 | | MATE family efflux transporter | 0.39 | RPSI07_RS22135 | | ribosomal subunit interface protein | low | > 81 |
| Pseudomonas sp. RS175 | 0.33 | PFR28_05231 | | DNA damage-inducible protein F | 0.54 | PFR28_00172 | | Ribosome hibernation promoting factor | low | > 88 |
| Paraburkholderia sabiae LMG 24235 | 0.33 | QEN71_RS04895 | | MATE family efflux transporter | 0.39 | QEN71_RS01750 | | ribosome-associated translation inhibitor RaiA | low | > 153 |
| Pseudomonas segetis P6 | 0.33 | ACVTMO_RS20250 | | MATE family efflux transporter | 0.57 | ACVTMO_RS19125 | hpf | ribosome hibernation-promoting factor, HPF/YfiA family | low | > 75 |
| Dyella japonica UNC79MFTsu3.2 | 0.33 | ABZR86_RS00490 | | MATE family efflux transporter | 0.39 | ABZR86_RS19810 | | ribosome-associated translation inhibitor RaiA | low | > 74 |
| Burkholderia phytofirmans PsJN | 0.33 | BPHYT_RS14080 | | multidrug transporter MatE | 0.38 | BPHYT_RS02900 | | ribosome hibernation promoting factor | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.33 | RS_RS18520 | | MATE family efflux transporter | 0.38 | RS_RS02015 | | ribosomal subunit interface protein | low | > 80 |
| Pseudomonas aeruginosa PA14 | 0.32 | IKLFDK_29470 | | DNA-damage-inducible protein F | 0.58 | IKLFDK_01765 | | Sigma 54 modulation protein / S30EA ribosomal protein | low | > 98 |
| Pseudomonas fluorescens SBW25-INTG | 0.32 | PFLU_RS03090 | | MATE family efflux transporter | 0.54 | PFLU_RS04395 | | ribosome-associated translation inhibitor RaiA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.32 | PFLU_RS03090 | | MATE family efflux transporter | 0.54 | PFLU_RS04395 | | ribosome-associated translation inhibitor RaiA | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.32 | RR42_RS09395 | | multidrug transporter MatE | 0.42 | RR42_RS02080 | | ribosome hibernation promoting factor | low | > 128 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.32 | H281DRAFT_04426 | | multidrug resistance protein, MATE family | 0.38 | H281DRAFT_01928 | | sigma 54 modulation protein /SSU ribosomal protein S30P | low | > 103 |
| Parabacteroides merdae CL09T00C40 | 0.31 | HMPREF1078_RS15090 | | MATE family efflux transporter | 0.27 | HMPREF1078_RS10880 | | ribosome-associated translation inhibitor RaiA | low | > 61 |
| Pseudomonas sp. SVBP6 | 0.31 | COO64_RS18420 | | MATE family efflux transporter | 0.54 | COO64_RS04280 | hpf | ribosome hibernation-promoting factor, HPF/YfiA family | low | > 93 |
| Pseudomonas aeruginosa PUPa3 | 0.31 | DQ20_RS52175 | | MATE family efflux transporter | 0.58 | DQ20_RS56620 | raiA;go_component=ribosome|0005840||IEA,cytosolic | ribosome-associated translation inhibitor RaiA | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.30 | DY961_RS09875 | | MATE family efflux transporter | 0.58 | DY961_RS24160 | raiA;go_component=ribosome|0005840||IEA,cytosolic | ribosome-associated translation inhibitor RaiA | low | > 100 |
| Pseudomonas sp. S08-1 | 0.27 | OH686_07530 | | MATE efflux family protein | 0.59 | OH686_08550 | | Ribosome hibernation promoting factor Hpf | low | > 80 |
Not shown: 11 genomes with orthologs for CSW01_00480 only; 25 genomes with orthologs for CSW01_12820 only