Conservation of cofitness between CSW01_07955 and CSW01_10335 in Vibrio cholerae E7946 ATCC 55056

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07955 catalase 1.0 CSW01_10335 RNA polymerase sigma factor FliA 0.59 18
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS22170 catalase 0.47 ABZR86_RS20265 RNA polymerase sigma factor FliA low > 74
Ralstonia solanacearum GMI1000 0.63 RS_RS24725 catalase 0.40 RS_RS23830 RNA polymerase sigma factor FliA low > 80
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS16285 catalase 0.39 RALBFv3_RS17485 RNA polymerase sigma factor FliA low > 76
Ralstonia solanacearum UW163 0.63 UW163_RS17020 catalase 0.39 UW163_RS21665 RNA polymerase sigma factor FliA — —
Pseudomonas sp. RS175 0.62 PFR28_03794 Catalase 0.51 PFR28_00852 RNA polymerase sigma factor FliA low > 88
Ralstonia solanacearum PSI07 0.62 RPSI07_RS07415 catalase 0.39 RPSI07_RS06165 RNA polymerase sigma factor FliA low > 81
Pseudomonas lactucae CFBP13502 0.62 GEMAOFIL_05016 Catalase 0.51 GEMAOFIL_04138 RNA polymerase sigma factor FliA 0.64 58
Pseudomonas aeruginosa PUPa3 0.62 DQ20_RS55830 katB;inference=COORDINATES catalase KatB 0.54 DQ20_RS47155 fliA;inference=COORDINATES RNA polymerase sigma factor FliA low > 101
Pseudomonas aeruginosa PA14 0.62 IKLFDK_00445 catalase KatB 0.54 IKLFDK_06920 flagellar biosynthesis sigma factor FliA low > 98
Pseudomonas aeruginosa MRSN321 0.62 DY961_RS23365 katB;inference=COORDINATES catalase KatB 0.54 DY961_RS05635 fliA;inference=COORDINATES RNA polymerase sigma factor FliA low > 100
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_15670 catalase 0.51 AO356_03730 flagellar biosynthesis sigma factor low > 104
Pseudomonas fluorescens FW300-N2E2 0.62 Pf6N2E2_5074 Catalase (EC 1.11.1.6) 0.51 Pf6N2E2_2573 RNA polymerase sigma factor for flagellar operon low > 103
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2766 Catalase (EC 1.11.1.6) 0.51 Pf1N1B4_3626 RNA polymerase sigma factor for flagellar operon low > 87
Pseudomonas orientalis W4I3 0.61 QF045_RS26610 catalase KatB 0.51 QF045_RS21835 RNA polymerase sigma factor FliA low > 93
Pseudomonas simiae WCS417 0.61 PS417_24315 catalase 0.51 PS417_19695 flagellar biosynthesis sigma factor low > 88
Pseudomonas fluorescens SBW25 0.61 PFLU_RS26240 catalase 0.51 PFLU_RS21660 RNA polymerase sigma factor FliA low > 109
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS26240 catalase 0.51 PFLU_RS21660 RNA polymerase sigma factor FliA low > 109
Erwinia tracheiphila HP pepo 2.2 0.61 IJEDHG_04555 Catalase 0.40 IJEDHG_21960 fliA RNA polymerase sigma factor FliA low > 61
Erwinia tracheiphila SCR3 0.60 LU632_RS04175 katB catalase 0.40 LU632_RS13785 RNA polymerase sigma factor FliA low > 73
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_13970 catalase 0.51 AO353_18785 flagellar biosynthesis sigma factor low > 101
Dickeya dadantii 3937 0.60 DDA3937_RS16290 catalase 0.41 DDA3937_RS13300 RNA polymerase sigma factor FliA low > 74
Pseudomonas stutzeri RCH2 0.60 Psest_0775 Catalase 0.52 Psest_1740 RNA polymerase sigma factor, FliA/WhiG family low > 67
Pseudomonas sp. DMC3 0.60 GFF3952 Catalase 0.51 GFF2472 RNA polymerase sigma factor FliA low > 89
Dickeya dianthicola 67-19 0.60 HGI48_RS16385 catalase 0.41 HGI48_RS13350 RNA polymerase sigma factor FliA low > 71
Dickeya dianthicola ME23 0.59 DZA65_RS17480 catalase 0.41 DZA65_RS13835 RNA polymerase sigma factor FliA low > 75
Pseudomonas syringae pv. syringae B728a 0.59 Psyr_3353 Catalase 0.52 Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.59 Psyr_3353 Catalase 0.52 Psyr_3437 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG low > 86
Xanthomonas campestris pv. campestris strain 8004 0.58 Xcc-8004.5014.1 Catalase (EC 1.11.1.6) 0.38 Xcc-8004.2832.1 RNA polymerase sigma factor for flagellar operon low > 74
Pseudomonas sp. SVBP6 0.57 COO64_RS14400 catalase 0.51 COO64_RS25625 fliA RNA polymerase sigma factor FliA low > 93
Alteromonas macleodii MIT1002 0.56 MIT1002_03530 Catalase precursor 0.59 MIT1002_01103 Sigma-F factor low > 70
Pseudomonas putida KT2440 0.40 PP_0481 Catalase 0.51 PP_4341 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons low > 96
Pseudomonas sp. BP01 0.40 JOY50_RS20315 catalase 0.51 JOY50_RS00585 fliA RNA polymerase sigma factor FliA low > 84
Shewanella loihica PV-4 0.40 Shew_3190 catalase (RefSeq) 0.58 Shew_1383 fliA flagellar biosynthesis sigma factor (RefSeq) low > 60
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_1281 Catalase (EC 1.11.1.6) 0.50 PfGW456L13_4331 RNA polymerase sigma factor for flagellar operon low > 87
Shewanella oneidensis MR-1 0.39 SO1070 katB catalase (NCBI ptt file) 0.59 SO3210 fliA RNA polymerase sigma-27 factor (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.39 Sama_2941 catalase (RefSeq) 0.57 Sama_2280 fliA flagellar biosynthesis sigma factor (RefSeq) low > 62
Shewanella sp. ANA-3 0.39 Shewana3_0908 catalase domain-containing protein (RefSeq) 0.59 Shewana3_1359 fliA flagellar biosynthesis sigma factor (RefSeq) low > 73
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS17380 catalase 0.39 RR42_RS35750 DNA-directed RNA polymerase sigma-70 factor low > 128
Desulfovibrio vulgaris Hildenborough JW710 0.37 DVUA0091 katA catalase (TIGR) 0.26 DVU3229 fliA RNA polymerase sigma factor for flagellar operon FliA (TIGR) low > 55
Rahnella sp. WP5 0.37 EX31_RS19330 catalase 0.41 EX31_RS09450 RNA polymerase sigma factor FliA low > 89
Castellaniella sp019104865 MT123 0.37 ABCV34_RS02155 catalase 0.37 ABCV34_RS05605 RNA polymerase sigma factor FliA low > 48
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_03700 katE catalase 0.47 OKGIIK_02830 fliA RNA polymerase sigma factor FliA low > 53
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS14930 catalase 0.47 LRK54_RS13580 RNA polymerase sigma factor FliA low > 59
Rhodanobacter denitrificans MT42 0.37 LRK55_RS14645 catalase 0.47 LRK55_RS13320 RNA polymerase sigma factor FliA low > 63
Rhodanobacter sp000427505 FW510-R12 0.36 LRK53_RS13690 catalase 0.47 LRK53_RS14995 RNA polymerase sigma factor FliA low > 59
Desulfovibrio vulgaris Miyazaki F 0.36 DvMF_1242 Catalase (RefSeq) 0.29 DvMF_2011 RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq) low > 51
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_04675 catalase 0.42 H281DRAFT_05756 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG low > 103
Paraburkholderia graminis OAS925 0.36 ABIE53_000836 catalase 0.42 ABIE53_000108 RNA polymerase sigma factor for flagellar operon FliA low > 113
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS26620 catalase 0.42 QEN71_RS28940 RNA polymerase sigma factor FliA low > 153
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS03475 catalase 0.41 BPHYT_RS18925 RNA polymerase sigma70 low > 109
Serratia liquefaciens MT49 0.35 IAI46_17535 catalase 0.41 IAI46_15785 RNA polymerase sigma factor FliA low > 87
Pseudomonas segetis P6 0.35 MPMX49_01754 Catalase 0.52 MPMX49_03127 RNA polymerase sigma factor FliA low > 75
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF3243 Catalase (EC 1.11.1.6) 0.41 GFF1428 RNA polymerase sigma factor for flagellar operon low > 90
Erwinia amylovora T8 0.32 OLJFJH_14135 catalase 0.39 OLJFJH_12555 RNA polymerase sigma factor FliA low > 58

Not shown: 11 genomes with orthologs for CSW01_07955 only; 30 genomes with orthologs for CSW01_10335 only