Conservation of cofitness between CSW01_03755 and CSW01_03695 in Vibrio cholerae E7946 ATCC 55056

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03755 recombination-associated protein RdgC 1.0 CSW01_03695 ribosomal large subunit pseudouridine synthase D 0.79 11
Dickeya dianthicola 67-19 0.59 HGI48_RS05465 recombination-associated protein RdgC 0.70 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Dickeya dianthicola ME23 0.59 DZA65_RS05790 recombination-associated protein RdgC 0.70 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Dickeya dadantii 3937 0.58 DDA3937_RS05405 recombination-associated protein RdgC 0.70 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Erwinia amylovora T8 0.58 OLJFJH_18235 recombination-associated protein RdgC 0.70 OLJFJH_09725 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 58
Rahnella sp. WP5 0.58 EX31_RS21990 recombination-associated protein RdgC 0.69 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 89
Pantoea sp. MT58 0.58 IAI47_14910 recombination-associated protein RdgC 0.70 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Klebsiella pneumoniae MKP103 0.58 KDGMDA_14285 recombination-associated protein RdgC 0.70 KDGMDA_02140 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 95
Serratia liquefaciens MT49 0.58 IAI46_04710 recombination-associated protein RdgC 0.70 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Klebsiella michiganensis M5al 0.57 BWI76_RS06205 recombination-associated protein RdgC 0.69 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase low > 92
Pantoea agglomerans CFBP13505 P0401 0.57 PagCFBP13505_RS10255 recombination-associated protein RdgC 0.70 PagCFBP13505_RS16540 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Escherichia coli ECOR38 0.57 HEPCGN_07210 rdgC recombination-associated protein RdgC 0.70 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 88
Escherichia coli ECOR27 0.57 NOLOHH_01500 rdgC recombination-associated protein RdgC 0.71 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Escherichia coli BW25113 0.57 b0393 rdgC recombination associated protein (NCBI) 0.70 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) — —
Escherichia coli BL21 0.57 ECD_00342 nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function 0.70 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_03282 Recombination-associated protein RdgC 0.70 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D low > 74
Escherichia fergusonii Becca 0.57 EFB2_03663 Recombination-associated protein RdgC 0.70 EFB2_01296 Ribosomal large subunit pseudouridine synthase D low > 86
Escherichia coli ECRC62 0.57 BNILDI_22915 rdgC recombination-associated protein RdgC 0.71 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Erwinia tracheiphila HP pepo 2.2 0.57 IJEDHG_26160 rdgC recombination-associated protein RdgC 0.68 IJEDHG_26870 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 61
Escherichia coli Nissle 1917 0.57 ECOLIN_RS02385 recombination-associated protein RdgC 0.70 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF4290 DNA recombination-dependent growth factor C 0.70 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 78
Escherichia coli ECRC100 0.57 OKFHMN_08570 rdgC recombination-associated protein RdgC 0.70 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 79
Escherichia coli ECRC99 0.57 KEDOAH_19395 rdgC recombination-associated protein RdgC 0.70 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Erwinia tracheiphila SCR3 0.57 LU632_RS18955 rdgC recombination-associated protein RdgC 0.68 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 73
Escherichia coli ECRC101 0.57 MCAODC_27795 rdgC recombination-associated protein RdgC 0.70 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli ECRC102 0.57 NIAGMN_06625 rdgC recombination-associated protein RdgC 0.70 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 80
Escherichia coli ECRC98 0.57 JDDGAC_12225 rdgC recombination-associated protein RdgC 0.70 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Enterobacter asburiae PDN3 0.56 EX28DRAFT_2579 DNA recombination-dependent growth factor C 0.70 EX28DRAFT_2695 pseudouridine synthase, RluA family low > 76
Enterobacter sp. TBS_079 0.56 MPMX20_00982 Recombination-associated protein RdgC 0.70 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D low > 85
Pectobacterium carotovorum WPP14 0.55 HER17_RS16060 recombination-associated protein RdgC 0.71 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Shewanella amazonensis SB2B 0.49 Sama_1072 rdgC recombination associated protein (RefSeq) 0.59 Sama_2605 pseudouridylate synthase (RefSeq) — —
Shewanella sp. ANA-3 0.49 Shewana3_2881 rdgC recombination associated protein (RefSeq) 0.60 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) low > 73
Shewanella loihica PV-4 0.48 Shew_2751 rdgC recombination associated protein (RefSeq) 0.60 Shew_2950 RluA family pseudouridine synthase (RefSeq) low > 60
Pseudomonas aeruginosa MRSN321 0.44 DY961_RS00580 rdgC;inference=COORDINATES recombination-associated protein RdgC 0.51 DY961_RS23730 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 100
Pseudomonas aeruginosa PA14 0.44 IKLFDK_16705 recombination-associated protein RdgC 0.51 IKLFDK_00810 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 98
Pseudomonas aeruginosa PUPa3 0.44 DQ20_RS40455 rdgC;inference=COORDINATES recombination-associated protein RdgC 0.51 DQ20_RS56195 rluD;go_function=RNA 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 101
Pseudomonas putida KT2440 0.43 PP_1702 Recombination-associated protein RdgC 0.53 PP_0623 23S rRNA pseudouridine(1911,1915,1917) synthase — —
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_19265 recombination-associated protein RdgC 0.55 AO356_15925 ribosomal large subunit pseudouridine synthase D low > 104
Pseudomonas sp. BP01 0.43 JOY50_RS28065 rdgC recombination-associated protein RdgC 0.54 JOY50_RS27130 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 84
Pseudomonas syringae pv. syringae B728a 0.43 Psyr_1588 Putative exonuclease, RdgC 0.54 Psyr_0726 ribosomal large subunit pseudouridine synthase D 0.30 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.43 Psyr_1588 Putative exonuclease, RdgC 0.54 Psyr_0726 ribosomal large subunit pseudouridine synthase D low > 86
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_5768 DNA recombination-dependent growth factor C 0.54 Pf6N2E2_5127 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas sp. S08-1 0.42 OH686_19640 DNA recombination-dependent growth factor RdgC 0.53 OH686_16410 LSU rRNA pseudouridine(1911/1915/1917) synthase low > 80
Pseudomonas sp. RS175 0.42 PFR28_03182 Recombination-associated protein RdgC 0.54 PFR28_03748 Ribosomal large subunit pseudouridine synthase D low > 88
Pseudomonas sp. SVBP6 0.42 COO64_RS07115 rdgC recombination-associated protein RdgC 0.54 COO64_RS11055 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 93
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_02515 recombination-associated protein RdgC 0.54 AO353_14220 ribosomal large subunit pseudouridine synthase D low > 101
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_3731 DNA recombination-dependent growth factor C 0.54 Pf1N1B4_2822 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas segetis P6 0.41 MPMX49_01735 Recombination-associated protein RdgC 0.53 MPMX49_03922 Ribosomal large subunit pseudouridine synthase D low > 75
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_4216 DNA recombination-dependent growth factor C 0.54 PfGW456L13_1493 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Pseudomonas sp. DMC3 0.41 GFF2574 Recombination-associated protein RdgC 0.54 GFF4004 Ribosomal large subunit pseudouridine synthase D low > 89
Pseudomonas fluorescens SBW25 0.40 PFLU_RS09255 recombination-associated protein RdgC 0.54 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 109
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS09255 recombination-associated protein RdgC 0.54 PFLU_RS03870 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.21 23
Marinobacter adhaerens HP15 0.40 HP15_1221 recombination-associated protein rdgC 0.51 HP15_527 pseudouridine synthase, RluA family low > 73
Pseudomonas orientalis W4I3 0.40 QF045_RS11910 recombination-associated protein RdgC 0.54 QF045_RS06805 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 93
Pseudomonas lactucae CFBP13502 0.40 GEMAOFIL_01972 Recombination-associated protein RdgC 0.54 GEMAOFIL_00969 Ribosomal large subunit pseudouridine synthase D low > 96
Pseudomonas simiae WCS417 0.40 PS417_09245 recombinase RdgC 0.54 PS417_03820 ribosomal large subunit pseudouridine synthase D — —
Alteromonas macleodii MIT1002 0.37 MIT1002_00749 Recombination-associated protein RdgC 0.59 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D low > 70
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS21640 recombinase RdgC 0.35 HSERO_RS15070 ribosomal large subunit pseudouridine synthase D low > 78
Castellaniella sp019104865 MT123 0.33 ABCV34_RS04480 recombination-associated protein RdgC 0.33 ABCV34_RS01885 RluA family pseudouridine synthase — —
Lysobacter sp. OAE881 0.31 ABIE51_RS01300 recombination-associated protein RdgC 0.49 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS16505 recombination-associated protein RdgC 0.48 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS12420 recombination-associated protein RdgC 0.38 RALBFv3_RS01520 RluA family pseudouridine synthase low > 76
Ralstonia solanacearum UW163 0.30 UW163_RS01150 recombination-associated protein RdgC 0.38 UW163_RS14830 RluA family pseudouridine synthase — —
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS10690 recombination-associated protein RdgC 0.48 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Rhodanobacter denitrificans MT42 0.30 LRK55_RS10330 recombination-associated protein RdgC 0.48 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Rhodanobacter sp000427505 FW510-R12 0.30 LRK53_RS03480 recombination-associated protein RdgC 0.47 LRK53_RS05045 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS18475 recombination-associated protein RdgC 0.38 ABZR87_RS13315 RluA family pseudouridine synthase low > 80
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.5210.1 DNA recombination-dependent growth factor C 0.51 Xcc-8004.1362.1 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_13190 rdgC recombination-associated protein RdgC 0.46 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Ralstonia solanacearum GMI1000 0.29 RS_RS03100 recombination-associated protein RdgC 0.39 RS_RS08205 RluA family pseudouridine synthase low > 80
Kangiella aquimarina DSM 16071 0.29 B158DRAFT_1192 DNA recombination-dependent growth factor C 0.53 B158DRAFT_2532 Pseudouridylate synthases, 23S RNA-specific low > 40
Ralstonia solanacearum PSI07 0.28 RPSI07_RS20910 recombination-associated protein RdgC 0.39 RPSI07_RS15970 RluA family pseudouridine synthase low > 81
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF5355 DNA recombination-dependent growth factor C 0.35 GFF4870 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) — —
Variovorax sp. SCN45 0.24 GFF5080 DNA recombination-dependent growth factor RdgC 0.30 GFF988 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) 0.65 15

Not shown: 8 genomes with orthologs for CSW01_03755 only; 39 genomes with orthologs for CSW01_03695 only