Conservation of cofitness between CSW01_11400 and CSW01_03470 in Vibrio cholerae E7946 ATCC 55056

60 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_11400 lytic transglycosylase 1.0 CSW01_03470 peptide chain release factor 3 0.54 18
Alteromonas macleodii MIT1002 0.50 MIT1002_02495 Membrane-bound lytic murein transglycosylase D precursor 0.82 MIT1002_01192 Peptide chain release factor 3 low > 70
Shewanella loihica PV-4 0.46 Shew_2115 lytic transglycosylase, catalytic (RefSeq) 0.80 Shew_2820 prfC peptide chain release factor 3 (RefSeq) low > 60
Marinobacter adhaerens HP15 0.41 HP15_1806 membrane-bound lytic murein transglycosylase D precursor 0.81 HP15_541 peptide chain release factor 3 low > 73
Shewanella sp. ANA-3 0.41 Shewana3_2370 MltD domain-containing protein (RefSeq) 0.81 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) — —
Shewanella amazonensis SB2B 0.35 Sama_1885 Slt family transglycosylase (RefSeq) 0.87 Sama_0968 prfC peptide chain release factor 3 (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.33 B158DRAFT_1060 FOG: LysM repeat 0.77 B158DRAFT_2239 peptide chain release factor 3 low > 40
Pseudomonas sp. S08-1 0.33 OH686_03585 Membrane-bound lytic murein transglycosylase D 0.69 OH686_08765 peptide chain release factor 3 — —
Pseudomonas segetis P6 0.33 MPMX49_02811 Membrane-bound lytic murein transglycosylase D 0.70 MPMX49_03892 Peptide chain release factor RF3 low > 75
Pseudomonas stutzeri RCH2 0.32 Psest_2070 FOG: LysM repeat 0.70 Psest_3351 peptide chain release factor 3 low > 67
Pseudomonas aeruginosa MRSN321 0.31 DY961_RS20790 lytic transglycosylase domain-containing protein 0.69 DY961_RS13355 peptide chain release factor 3 low > 100
Pseudomonas aeruginosa PA14 0.31 IKLFDK_08810 lytic transglycosylase 0.69 IKLFDK_20120 peptide chain release factor 3 low > 98
Pseudomonas aeruginosa PUPa3 0.31 DQ20_RS54870 lytic transglycosylase domain-containing protein 0.69 DQ20_RS48655 peptide chain release factor 3 low > 101
Pantoea agglomerans CFBP13505 P0401 0.30 PagCFBP13505_RS09810 murein transglycosylase D 0.85 PagCFBP13505_RS16330 peptide chain release factor 3 low > 74
Pantoea sp. MT58 0.30 IAI47_15345 murein transglycosylase D 0.85 IAI47_03375 peptide chain release factor 3 low > 76
Pseudomonas syringae pv. syringae B728a 0.30 Psyr_1760 Peptidoglycan-binding LysM:SLT:MLTD_N 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.30 Psyr_1760 Peptidoglycan-binding LysM:SLT:MLTD_N 0.69 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pectobacterium carotovorum WPP14 0.30 HER17_RS05450 murein transglycosylase D 0.85 HER17_RS19065 peptide chain release factor 3 low > 75
Dickeya dianthicola 67-19 0.30 HGI48_RS16185 murein transglycosylase D 0.86 HGI48_RS02400 peptide chain release factor 3 — —
Dickeya dianthicola ME23 0.30 DZA65_RS17270 murein transglycosylase D 0.86 DZA65_RS02505 peptide chain release factor 3 low > 75
Serratia liquefaciens MT49 0.30 IAI46_04130 murein transglycosylase D 0.86 IAI46_02875 peptide chain release factor 3 low > 87
Dickeya dadantii 3937 0.30 DDA3937_RS16065 murein transglycosylase D 0.86 DDA3937_RS02445 peptide chain release factor 3 low > 74
Rahnella sp. WP5 0.30 EX31_RS21205 murein transglycosylase D 0.86 EX31_RS04095 peptide chain release factor 3 — —
Erwinia tracheiphila SCR3 0.29 LU632_RS01075 mltD murein transglycosylase D 0.85 LU632_RS02475 prfC peptide chain release factor 3 0.52 29
Erwinia amylovora T8 0.29 OLJFJH_18645 murein transglycosylase D 0.85 OLJFJH_01655 peptide chain release factor 3 low > 58
Erwinia tracheiphila HP pepo 2.2 0.29 IJEDHG_15375 mltD murein transglycosylase D 0.85 IJEDHG_06470 prfC peptide chain release factor 3 low > 61
Enterobacter asburiae PDN3 0.28 EX28DRAFT_2683 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 0.87 EX28DRAFT_3583 peptide chain release factor 3 low > 76
Klebsiella michiganensis M5al 0.28 BWI76_RS05435 murein transglycosylase D 0.87 BWI76_RS04100 peptide chain release factor 3 low > 92
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_586 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) 0.69 Pf6N2E2_3327 Peptide chain release factor 3 — —
Pseudomonas putida KT2440 0.28 PP_4145 Membrane-bound lytic murein transglycosylase D 0.69 PP_0872 Peptide chain release factor 3 low > 96
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_24475 lytic transglycosylase 0.69 AO356_07285 peptide chain release factor 3 — —
Enterobacter sp. TBS_079 0.27 MPMX20_00896 Membrane-bound lytic murein transglycosylase D 0.87 MPMX20_00673 Peptide chain release factor RF3 low > 85
Pseudomonas sp. BP01 0.27 JOY50_RS07095 lytic transglycosylase domain-containing protein 0.69 JOY50_RS22670 peptide chain release factor 3 low > 84
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_3341 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) 0.69 PfGW456L13_5060 Peptide chain release factor 3 0.39 69
Pseudomonas sp. RS175 0.27 PFR28_01551 Membrane-bound lytic murein transglycosylase D 0.69 PFR28_00118 Peptide chain release factor RF3 — —
Pseudomonas sp. SVBP6 0.27 COO64_RS19245 transglycosylase SLT domain-containing protein 0.69 COO64_RS04060 peptide chain release factor 3 low > 93
Escherichia coli Nissle 1917 0.27 ECOLIN_RS01155 murein transglycosylase D 0.86 ECOLIN_RS25110 peptide chain release factor 3 low > 55
Escherichia coli BW25113 0.27 b0211 mltD predicted membrane-bound lytic murein transglycosylase D (NCBI) 0.86 b4375 prfC peptide chain release factor 3 (NCBI) low > 76
Escherichia coli BL21 0.27 ECD_00204 putative membrane-bound lytic murein transglycosylase D 0.86 ECD_04250 peptide chain release factor RF-3 low > 61
Pseudomonas simiae WCS417 0.26 PS417_12215 lytic transglycosylase 0.69 PS417_04030 peptide chain release factor 3 — —
Burkholderia phytofirmans PsJN 0.26 BPHYT_RS14205 lytic transglycosylase 0.51 BPHYT_RS34275 peptide chain release factor 3 low > 109
Pseudomonas fluorescens SBW25 0.26 PFLU_RS12905 transglycosylase SLT domain-containing protein 0.69 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS12905 transglycosylase SLT domain-containing protein 0.69 PFLU_RS04070 peptide chain release factor 3 low > 109
Paraburkholderia graminis OAS925 0.26 ABIE53_003006 membrane-bound lytic murein transglycosylase D 0.51 ABIE53_004717 peptide chain release factor 3 low > 113
Pseudomonas orientalis W4I3 0.26 QF045_RS14750 transglycosylase SLT domain-containing protein 0.69 QF045_RS07015 peptide chain release factor 3 low > 93
Pseudomonas lactucae CFBP13502 0.26 GEMAOFIL_02688 Membrane-bound lytic murein transglycosylase D 0.69 GEMAOFIL_01011 Peptide chain release factor RF3 low > 96
Dechlorosoma suillum PS 0.26 Dsui_2797 LysM repeat-containing protein 0.60 Dsui_2418 peptide chain release factor 3 low > 51
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS04765 transglycosylase SLT domain-containing protein 0.51 QEN71_RS17200 peptide chain release factor 3 low > 153
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_04400 membrane-bound lytic murein transglycosylase D 0.52 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) low > 103
Ralstonia sp. UNC404CL21Col 0.24 ABZR87_RS14160 transglycosylase SLT domain-containing protein 0.60 ABZR87_RS23485 peptide chain release factor 3 low > 80
Ralstonia solanacearum IBSBF1503 0.24 RALBFv3_RS02210 lytic transglycosylase 0.60 RALBFv3_RS23345 peptide chain release factor 3 low > 76
Ralstonia solanacearum UW163 0.24 UW163_RS15520 lytic transglycosylase 0.60 UW163_RS16595 peptide chain release factor 3 — —
Ralstonia solanacearum PSI07 0.24 RPSI07_RS15235 lytic transglycosylase 0.59 RPSI07_RS07810 peptide chain release factor 3 low > 81
Cupriavidus basilensis FW507-4G11 0.24 RR42_RS13565 lytic transglycosylase 0.61 RR42_RS37475 peptide chain release factor 3 low > 128
Methylophilus sp. DMC18 0.23 GFF1316 hypothetical protein 0.58 GFF993 Peptide chain release factor 3 low > 43
Acidovorax sp. GW101-3H11 0.23 Ac3H11_477 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) 0.52 Ac3H11_3041 Peptide chain release factor 3 — —
Variovorax sp. SCN45 0.21 GFF1116 Membrane-bound lytic murein transglycosylase D 0.51 GFF2045 Peptide chain release factor 3 low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.21 GFF4256 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) 0.52 GFF768 Peptide chain release factor 3 low > 90
Desulfovibrio vulgaris Hildenborough JW710 0.19 DVU0041 transglycosylase, SLT family (TIGR) 0.59 DVU3116 prfC peptide chain release factor 3 (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.17 DvMF_2218 Lytic transglycosylase catalytic (RefSeq) 0.60 DvMF_2372 prfC peptide chain release factor 3 (RefSeq) 0.42 13
Dyella japonica UNC79MFTsu3.2 0.13 ABZR86_RS07290 LysM peptidoglycan-binding domain-containing protein 0.66 ABZR86_RS19000 peptide chain release factor 3 — —

Not shown: 3 genomes with orthologs for CSW01_11400 only; 53 genomes with orthologs for CSW01_03470 only