| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_14090 | | NAD(P)-dependent oxidoreductase | 1.0 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | 0.63 | 8 |
| Rhodopseudomonas palustris CGA009 | 0.54 | TX73_010170 | | NAD(P)-dependent oxidoreductase | 0.30 | TX73_020255 | | RNA polymerase-binding protein DksA | low | > 86 |
| Shewanella loihica PV-4 | 0.54 | Shew_1609 | | 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq) | 0.83 | Shew_3129 | | TraR/DksA family transcriptional regulator (RefSeq) | — | — |
| Rhizobium sp. OAE497 | 0.54 | ABIE40_RS10680 | | NAD(P)-dependent oxidoreductase | 0.35 | ABIE40_RS10345 | | RNA polymerase-binding protein DksA | low | > 107 |
| Bosea sp. OAE506 | 0.53 | ABIE41_RS21160 | | NAD(P)-dependent oxidoreductase | 0.31 | ABIE41_RS13460 | | RNA polymerase-binding protein DksA | low | > 77 |
| Sinorhizobium meliloti 1021 | 0.52 | SMc00133 | | oxidoreductase | 0.35 | SMc00469 | | DnaK suppressor protein | — | — |
| Marinobacter adhaerens HP15 | 0.51 | HP15_1515 | | 6-phosphogluconate dehydrogenase domain protein | 0.63 | HP15_332 | | transcriptional regulator, TraR/DksA family | — | — |
| Shewanella sp. ANA-3 | 0.51 | Shewana3_2554 | | 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq) | 0.82 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.50 | Sama_1975 | | 2-hydroxy-3-oxopropionate reductase (RefSeq) | 0.82 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.50 | MIT1002_01976 | | 2-hydroxy-3-oxopropionate reductase | 0.70 | MIT1002_03690 | | DnaK suppressor protein | low | > 70 |
| Pseudomonas sp. S08-1 | 0.50 | OH686_02015 | | 2-hydroxy-3-oxopropionate reductase | 0.70 | OH686_17280 | | RNA polymerase-binding protein DksA | — | — |
| Caulobacter crescentus NA1000 | 0.50 | CCNA_01645 | | 3-hydroxyisobutyrate dehydrogenase | 0.34 | CCNA_02663 | | DnaK suppressor protein DksA | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.50 | CCNA_01645 | | 3-hydroxyisobutyrate dehydrogenase | 0.34 | CCNA_02663 | | DnaK suppressor protein DksA | low | > 67 |
| Shewanella oneidensis MR-1 | 0.50 | SO2771 | garR | 2-hydroxy-3-oxopropionate reductase (NCBI ptt file) | 0.83 | SO0874 | dksA | DnaK suppressor protein (NCBI ptt file) | — | — |
| Pseudomonas segetis P6 | 0.49 | MPMX49_02338 | | 2-hydroxy-3-oxopropionate reductase | 0.69 | MPMX49_01257 | | RNA polymerase-binding transcription factor DksA | — | — |
| Pseudomonas aeruginosa PA14 | 0.49 | IKLFDK_07540 | | oxidoreductase | 0.70 | IKLFDK_30000 | | RNA polymerase-binding protein DksA | low | > 98 |
| Pseudomonas aeruginosa MRSN321 | 0.49 | DY961_RS19525 | | NAD(P)-dependent oxidoreductase | 0.70 | DY961_RS09350 | dksA;go_function=enzyme | RNA polymerase-binding protein DksA | low | > 100 |
| Sphingobium sp. HT1-2 | 0.49 | GFF1491 | | 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) | 0.33 | GFF2254 | | DksA family protein PA5536 (no Zn-finger) | low | > 95 |
| Pseudomonas aeruginosa PUPa3 | 0.48 | DQ20_RS53640 | | NAD(P)-dependent oxidoreductase | 0.70 | DQ20_RS52680 | dksA;go_function=enzyme | RNA polymerase-binding protein DksA | low | > 101 |
| Phaeobacter inhibens DSM 17395 | 0.47 | PGA1_c14880 | | putative 3-hydroxyisobutyrate dehydrogenase | 0.32 | PGA1_c11040 | | dnaK suppressor protein DksA | 0.24 | 35 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.43 | A4249_RS06070 | | NAD(P)-dependent oxidoreductase | 0.34 | A4249_RS08530 | | RNA polymerase-binding protein DksA | low | > 48 |
| Escherichia coli ECRC62 | 0.31 | BNILDI_01380 | garR | 2-hydroxy-3-oxopropionate reductase | 0.86 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | low | > 75 |
| Escherichia coli ECRC100 | 0.31 | OKFHMN_18370 | garR | 2-hydroxy-3-oxopropionate reductase | 0.86 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | low | > 79 |
| Escherichia coli BL21 | 0.31 | ECD_02990 | | tartronate semialdehyde reductase | 0.86 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | — | — |
| Escherichia coli ECRC98 | 0.31 | JDDGAC_22000 | garR | 2-hydroxy-3-oxopropionate reductase | 0.86 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | low | > 87 |
| Escherichia coli ECRC99 | 0.31 | KEDOAH_09780 | garR | 2-hydroxy-3-oxopropionate reductase | 0.86 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli Nissle 1917 | 0.31 | ECOLIN_RS17960 | | 2-hydroxy-3-oxopropionate reductase | 0.86 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | — | — |
| Dechlorosoma suillum PS | 0.31 | Dsui_3436 | | beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase | 0.56 | Dsui_2717 | | RNA polymerase-binding protein DksA | low | > 51 |
| Escherichia coli ECOR38 | 0.31 | HEPCGN_17205 | garR | 2-hydroxy-3-oxopropionate reductase | 0.86 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | low | > 88 |
| Escherichia coli ECRC102 | 0.31 | NIAGMN_16130 | garR | 2-hydroxy-3-oxopropionate reductase | 0.86 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | low | > 80 |
| Escherichia coli BW25113 | 0.31 | b3125 | garR | tartronate semialdehyde reductase (RefSeq) | 0.86 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.31 | OHPLBJKB_00578 | | 2-hydroxy-3-oxopropionate reductase | 0.86 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | low | > 74 |
| Escherichia coli ECOR27 | 0.31 | NOLOHH_10150 | garR | 2-hydroxy-3-oxopropionate reductase | 0.86 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | low | > 76 |
| Escherichia coli ECRC101 | 0.31 | MCAODC_08880 | garR | 2-hydroxy-3-oxopropionate reductase | 0.86 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | low | > 87 |
| Rahnella sp. WP5 | 0.30 | EX31_RS07980 | | 2-hydroxy-3-oxopropionate reductase | 0.86 | EX31_RS03250 | | RNA polymerase-binding protein DksA | low | > 89 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.30 | GFF1536 | | 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) | 0.86 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | low | > 78 |
| Klebsiella pneumoniae MKP103 | 0.30 | KDGMDA_05690 | | 2-hydroxy-3-oxopropionate reductase | 0.86 | KDGMDA_13270 | | RNA polymerase-binding protein DksA | low | > 95 |
| Escherichia fergusonii Becca | 0.29 | EFB2_00694 | | 2-hydroxy-3-oxopropionate reductase | 0.86 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | low | > 86 |
| Klebsiella michiganensis M5al | 0.29 | BWI76_RS24825 | | 2-hydroxy-3-oxopropionate reductase | 0.84 | BWI76_RS05015 | | transcriptional regulator | low | > 92 |
| Dickeya dadantii 3937 | 0.29 | DDA3937_RS17035 | | 2-hydroxy-3-oxopropionate reductase | 0.86 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | — | — |
| Pantoea sp. MT58 | 0.28 | IAI47_04100 | | 2-hydroxy-3-oxopropionate reductase | 0.85 | IAI47_15635 | | RNA polymerase-binding protein DksA | low | > 76 |
| Dickeya dianthicola ME23 | 0.28 | DZA65_RS18165 | | 2-hydroxy-3-oxopropionate reductase | 0.85 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | — | — |
| Erwinia tracheiphila HP pepo 2.2 | 0.28 | IJEDHG_17355 | garR | 2-hydroxy-3-oxopropionate reductase | 0.86 | IJEDHG_15060 | dksA | RNA polymerase-binding protein DksA | — | — |
| Pantoea agglomerans CFBP13505 P0401 | 0.28 | PagCFBP13505_RS16870 | | 2-hydroxy-3-oxopropionate reductase | 0.85 | PagCFBP13505_RS13365 | | RNA polymerase-binding protein DksA | low | > 74 |
| Enterobacter asburiae PDN3 | 0.28 | EX28DRAFT_3182 | | 2-hydroxy-3-oxopropionate reductase | 0.86 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | — | — |
| Enterobacter sp. TBS_079 | 0.28 | MPMX20_04033 | | 2-hydroxy-3-oxopropionate reductase | 0.86 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | low | > 85 |
| Erwinia tracheiphila SCR3 | 0.28 | LU632_RS06330 | garR | 2-hydroxy-3-oxopropionate reductase | 0.86 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | — | — |
| Dickeya dianthicola 67-19 | 0.28 | HGI48_RS17090 | | 2-hydroxy-3-oxopropionate reductase | 0.85 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | 0.71 | 17 |
| Ralstonia sp. UNC404CL21Col | 0.28 | ABZR87_RS00230 | | NAD(P)-dependent oxidoreductase | 0.33 | ABZR87_RS05100 | | RNA polymerase-binding protein DksA | low | > 80 |
| Castellaniella sp019104865 MT123 | 0.27 | ABCV34_RS12130 | | 2-hydroxy-3-oxopropionate reductase | 0.31 | ABCV34_RS13420 | | RNA polymerase-binding protein DksA | — | — |
| Xanthobacter sp. DMC5 | 0.27 | GFF1957 | | 2-hydroxy-3-oxopropionate reductase | 0.33 | GFF1254 | | RNA polymerase-binding transcription factor DksA | — | — |
| Pectobacterium carotovorum WPP14 | 0.26 | HER17_RS04095 | | 2-hydroxy-3-oxopropionate reductase | 0.83 | HER17_RS05580 | | RNA polymerase-binding protein DksA | low | > 75 |
| Pseudomonas orientalis W4I3 | 0.26 | QF045_RS11500 | | 2-hydroxy-3-oxopropionate reductase | 0.69 | QF045_RS26135 | | RNA polymerase-binding protein DksA | low | > 93 |
| Pseudomonas simiae WCS417 | 0.26 | PS417_08800 | | tartronate semialdehyde reductase | 0.69 | PS417_23875 | | molecular chaperone DnaK | — | — |
| Pseudomonas stutzeri RCH2 | 0.25 | Psest_1179 | | 2-hydroxy-3-oxopropionate reductase | 0.68 | Psest_1003 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas fluorescens SBW25 | 0.25 | PFLU_RS08860 | | 2-hydroxy-3-oxopropionate reductase | 0.67 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.25 | PFLU_RS08860 | | 2-hydroxy-3-oxopropionate reductase | 0.67 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | low | > 109 |
| Pseudomonas lactucae CFBP13502 | 0.25 | GEMAOFIL_01891 | | 2-hydroxy-3-oxopropionate reductase | 0.69 | GEMAOFIL_04926 | | RNA polymerase-binding transcription factor DksA | low | > 96 |
| Pseudomonas fluorescens FW300-N2C3 | 0.25 | AO356_19610 | | 2-hydroxy-3-oxopropionate reductase | 0.68 | AO356_16095 | | molecular chaperone DnaK | low | > 104 |
| Pseudomonas sp. DMC3 | 0.25 | GFF2501 | | 2-hydroxy-3-oxopropionate reductase | 0.68 | GFF4034 | | RNA polymerase-binding transcription factor DksA | low | > 89 |
| Pseudomonas fluorescens GW456-L13 | 0.25 | PfGW456L13_4297 | | 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) | 0.67 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | low | > 87 |
| Pseudomonas sp. BP01 | 0.25 | JOY50_RS00360 | | 2-hydroxy-3-oxopropionate reductase | 0.68 | JOY50_RS27695 | dksA | RNA polymerase-binding protein DksA | low | > 84 |
| Pseudomonas sp. RS175 | 0.25 | PFR28_03112 | | 2-hydroxy-3-oxopropionate reductase | 0.68 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | — | — |
| Pseudomonas putida KT2440 | 0.25 | PP_4299 | | tartronate semialdehyde reductase | 0.64 | PP_4693 | | RNA polymerase-binding transcription factor DksA | — | — |
| Agrobacterium fabrum C58 | 0.25 | Atu2737 | | oxidoredutase | 0.35 | Atu1359 | | dnaK deletion suppressor protein | low | > 89 |
| Pseudomonas fluorescens FW300-N2E3 | 0.24 | AO353_01930 | | 2-hydroxy-3-oxopropionate reductase | 0.68 | AO353_14420 | | molecular chaperone DnaK | low | > 101 |
| Pseudomonas sp. SVBP6 | 0.23 | COO64_RS25875 | | 2-hydroxy-3-oxopropionate reductase | 0.67 | COO64_RS15070 | dksA | RNA polymerase-binding protein DksA | low | > 93 |
| Pseudomonas fluorescens FW300-N1B4 | 0.22 | Pf1N1B4_3659 | | 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) | 0.68 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.20 | Psyr_0690 | | 3-hydroxyisobutyrate dehydrogenase | 0.67 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.20 | Psyr_0690 | | 3-hydroxyisobutyrate dehydrogenase | 0.67 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | low | > 86 |
| Sphingomonas koreensis DSMZ 15582 | 0.18 | Ga0059261_3686 | | 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) | 0.32 | Ga0059261_0274 | | transcriptional regulator, TraR/DksA family | low | > 68 |
| Serratia liquefaciens MT49 | 0.17 | IAI46_07605 | | NAD(P)-dependent oxidoreductase | 0.86 | IAI46_21210 | | RNA polymerase-binding protein DksA | low | > 87 |
| Rhodospirillum rubrum S1H | 0.15 | Rru_A1833 | | 3-hydroxyisobutyrate dehydrogenase (NCBI) | 0.28 | Rru_A2847 | | Transcriptional regulators, TraR/DksA family (NCBI) | low | > 58 |
| Erwinia amylovora T8 | 0.13 | OLJFJH_17300 | | 3-hydroxyisobutyrate dehydrogenase | 0.86 | OLJFJH_00765 | | RNA polymerase-binding protein DksA | — | — |
Not shown: 33 genomes with orthologs for CSW01_14090 only; 2 genomes with orthologs for CSW01_03155 only