Conservation of cofitness between CSW01_03410 and CSW01_01485 in Vibrio cholerae E7946 ATCC 55056

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03410 polyribonucleotide nucleotidyltransferase 1.0 CSW01_01485 transcriptional regulator 0.83 8
Pantoea sp. MT58 0.78 IAI47_17005 polyribonucleotide nucleotidyltransferase 0.52 IAI47_01650 gluconate operon transcriptional repressor GntR 0.36 54
Klebsiella michiganensis M5al 0.77 BWI76_RS25065 polyribonucleotide nucleotidyltransferase 0.51 BWI76_RS26245 transcriptional regulator low > 92
Enterobacter asburiae PDN3 0.77 EX28DRAFT_3213 polyribonucleotide nucleotidyltransferase 0.51 EX28DRAFT_4274 transcriptional regulator, LacI family — —
Dickeya dadantii 3937 0.77 DDA3937_RS03090 polyribonucleotide nucleotidyltransferase 0.55 DDA3937_RS19785 gluconate operon transcriptional repressor GntR low > 74
Dickeya dianthicola 67-19 0.77 HGI48_RS03260 polyribonucleotide nucleotidyltransferase 0.55 HGI48_RS19900 gluconate operon transcriptional repressor GntR low > 71
Dickeya dianthicola ME23 0.77 DZA65_RS03255 polyribonucleotide nucleotidyltransferase 0.55 DZA65_RS20970 gluconate operon transcriptional repressor GntR low > 75
Escherichia coli BW25113 0.77 b3164 pnp polynucleotide phosphorylase/polyadenylase (RefSeq) 0.52 b3438 gntR DNA-binding transcriptional repressor (NCBI) low > 76
Enterobacter sp. TBS_079 0.77 MPMX20_04068 Polyribonucleotide nucleotidyltransferase 0.52 MPMX20_04319 HTH-type transcriptional regulator GntR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_00536 Polyribonucleotide nucleotidyltransferase 0.52 OHPLBJKB_00264 HTH-type transcriptional regulator GntR low > 73
Escherichia coli BL21 0.77 ECD_03031 polynucleotide phosphorylase/polyadenylase 0.51 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1502 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.49 GFF570 Gluconate utilization system Gnt-I transcriptional repressor low > 78
Escherichia coli ECRC102 0.77 NIAGMN_15900 pnp polyribonucleotide nucleotidyltransferase 0.52 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli ECRC101 0.77 MCAODC_08660 pnp polyribonucleotide nucleotidyltransferase 0.52 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR low > 87
Escherichia coli ECRC99 0.77 KEDOAH_10010 pnp polyribonucleotide nucleotidyltransferase 0.52 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli ECRC62 0.77 BNILDI_01595 pnp polyribonucleotide nucleotidyltransferase 0.52 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR low > 75
Escherichia coli ECOR27 0.77 NOLOHH_09940 pnp polyribonucleotide nucleotidyltransferase 0.51 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR low > 75
Escherichia coli ECRC100 0.77 OKFHMN_18140 pnp polyribonucleotide nucleotidyltransferase 0.52 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR low > 80
Escherichia coli ECRC98 0.77 JDDGAC_21765 pnp polyribonucleotide nucleotidyltransferase 0.52 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR low > 86
Escherichia coli ECOR38 0.77 HEPCGN_17015 pnp polyribonucleotide nucleotidyltransferase 0.52 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR — —
Escherichia coli Nissle 1917 0.77 ECOLIN_RS18175 polyribonucleotide nucleotidyltransferase 0.52 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR low > 55
Escherichia fergusonii Becca 0.77 EFB2_00659 Polyribonucleotide nucleotidyltransferase 0.52 EFB2_00382 HTH-type transcriptional regulator GntR low > 86
Erwinia tracheiphila SCR3 0.77 LU632_RS21040 pnp polyribonucleotide nucleotidyltransferase 0.53 LU632_RS19160 gntR gluconate operon transcriptional repressor GntR — —
Rahnella sp. WP5 0.76 EX31_RS08520 polyribonucleotide nucleotidyltransferase 0.54 EX31_RS05060 gluconate operon transcriptional repressor GntR low > 89
Erwinia amylovora T8 0.76 OLJFJH_07265 polyribonucleotide nucleotidyltransferase 0.56 OLJFJH_04280 gluconate operon transcriptional repressor GntR low > 58
Pectobacterium carotovorum WPP14 0.76 HER17_RS18190 polyribonucleotide nucleotidyltransferase 0.52 HER17_RS01450 gluconate operon transcriptional repressor GntR — —
Serratia liquefaciens MT49 0.76 IAI46_01955 polyribonucleotide nucleotidyltransferase 0.54 IAI46_23965 gluconate operon transcriptional repressor GntR low > 86
Alteromonas macleodii MIT1002 0.73 MIT1002_01888 Polyribonucleotide nucleotidyltransferase 0.31 MIT1002_03475 Gluconate utilization system GNT-I transcriptional repressor — —
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS08755 polynucleotide phosphorylase/polyadenylase 0.34 HSERO_RS05460 LacI family transcription regulator — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.64 GFF3677 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.30 GFF5509 Gluconate utilization system Gnt-I transcriptional repressor — —
Acidovorax sp. GW101-3H11 0.64 Ac3H11_1456 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.29 Ac3H11_3230 Gluconate utilization system Gnt-I transcriptional repressor — —
Variovorax sp. SCN45 0.63 GFF4746 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.30 GFF7257 KEGG: LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor — —
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_04562 polyribonucleotide nucleotidyltransferase 0.30 H281DRAFT_05920 transcriptional regulator, LacI family low > 103
Pseudomonas aeruginosa PA14 0.63 IKLFDK_29900 polyribonucleotide nucleotidyltransferase 0.36 IKLFDK_11375 LacI family DNA-binding transcriptional regulator GntR low > 101
Variovorax sp. OAS795 0.63 ABID97_RS20520 polyribonucleotide nucleotidyltransferase 0.29 ABID97_RS01205 LacI family DNA-binding transcriptional regulator low > 91
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS06600 polynucleotide phosphorylase/polyadenylase 0.32 BPHYT_RS00410 LacI family transcription regulator low > 109
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS24175 polyribonucleotide nucleotidyltransferase 0.29 QEN71_RS13585 LacI family DNA-binding transcriptional regulator — —
Pseudomonas stutzeri RCH2 0.61 Psest_0986 polyribonucleotide nucleotidyltransferase 0.34 Psest_2126 Transcriptional regulators — —
Pseudomonas sp. SVBP6 0.61 COO64_RS15150 pnp polyribonucleotide nucleotidyltransferase 0.34 COO64_RS25590 LacI family DNA-binding transcriptional regulator low > 93
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_07390 polyribonucleotide nucleotidyltransferase 0.34 AO356_05065 LacI family transcriptional regulator low > 104
Ralstonia solanacearum GMI1000 0.61 RS_RS10375 polyribonucleotide nucleotidyltransferase 0.26 RS_RS24865 LacI family DNA-binding transcriptional regulator low > 80
Cupriavidus basilensis FW507-4G11 0.61 RR42_RS05485 polynucleotide phosphorylase/polyadenylase 0.26 RR42_RS22645 GntR family transcriptional regulator low > 128
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_3349 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.34 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor low > 103
Pseudomonas sp. BP01 0.61 JOY50_RS26855 pnp polyribonucleotide nucleotidyltransferase 0.31 JOY50_RS23605 LacI family DNA-binding transcriptional regulator — —
Pseudomonas putida KT2440 0.61 PP_4708 Polyribonucleotide nucleotidyltransferase 0.31 PP_3415 Transcriptional regulator, LacI family — —
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_1156 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.35 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor — —
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS03005 polyribonucleotide nucleotidyltransferase 0.24 RALBFv3_RS16125 GntR family transcriptional regulator low > 76
Ralstonia solanacearum UW163 0.61 UW163_RS10720 polyribonucleotide nucleotidyltransferase 0.24 UW163_RS16860 GntR family transcriptional regulator — —
Pseudomonas sp. RS175 0.61 PFR28_00094 Polyribonucleotide nucleotidyltransferase 0.34 PFR28_00593 HTH-type transcriptional regulator GntR — —
Ralstonia solanacearum PSI07 0.61 RPSI07_RS14305 polyribonucleotide nucleotidyltransferase 0.26 RPSI07_RS07575 LacI family DNA-binding transcriptional regulator low > 81
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_4176 Polyribonucleotide nucleotidyltransferase 0.32 Psyr_3336 transcriptional regulator, LacI family — —
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_4176 Polyribonucleotide nucleotidyltransferase 0.32 Psyr_3336 transcriptional regulator, LacI family — —
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_5084 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.34 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor — —
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS14910 polyribonucleotide nucleotidyltransferase 0.26 ABZR87_RS18255 LacI family DNA-binding transcriptional regulator low > 80
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_05540 polyribonucleotide nucleotidyltransferase 0.33 AO353_03255 LacI family transcriptional regulator — —
Pseudomonas sp. DMC3 0.61 GFF4992 Polyribonucleotide nucleotidyltransferase 0.33 GFF5268 HTH-type transcriptional regulator GntR low > 89
Castellaniella sp019104865 MT123 0.60 ABCV34_RS01240 polyribonucleotide nucleotidyltransferase 0.26 ABCV34_RS12285 LacI family DNA-binding transcriptional regulator — —
Pseudomonas simiae WCS417 0.59 PS417_23950 polynucleotide phosphorylase/polyadenylase 0.33 PS417_21990 LacI family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase 0.34 PFLU_RS23595 LacI family DNA-binding transcriptional regulator low > 109
Agrobacterium fabrum C58 0.55 Atu0082 polyribonucleotide nucleotidyltransferase 0.28 Atu4685 LacI family transcriptional regulator — —
Azospirillum brasilense Sp245 0.55 AZOBR_RS01385 polynucleotide phosphorylase 0.31 AZOBR_RS15720 LacI family transcription regulator — —
Rhizobium sp. OAE497 0.55 ABIE40_RS00355 polyribonucleotide nucleotidyltransferase 0.25 ABIE40_RS04445 LacI family DNA-binding transcriptional regulator — —
Sinorhizobium meliloti 1021 0.55 SMc00324 polynucleotide phosphorylase/polyadenylase 0.29 SM_b20667 LacI family transcriptional regulator — —
Azospirillum sp. SherDot2 0.54 MPMX19_02526 Polyribonucleotide nucleotidyltransferase 0.29 MPMX19_05332 HTH-type transcriptional regulator GntR — —
Xanthobacter sp. DMC5 0.54 GFF2302 Polyribonucleotide nucleotidyltransferase 0.31 GFF1533 HTH-type transcriptional regulator GntR — —
Dinoroseobacter shibae DFL-12 0.53 Dshi_2997 Polyribonucleotide nucleotidyltransferase (RefSeq) 0.27 Dshi_3322 transcriptional regulator, LacI family (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.52 PGA1_c33000 polyribonucleotide nucleotidyltransferase Pnp 0.28 PGA1_c33870 putative HTH-type transcriptional regulator GntR — —

Not shown: 43 genomes with orthologs for CSW01_03410 only; 0 genomes with orthologs for CSW01_01485 only