| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | 1.0 | CSW01_01485 | | transcriptional regulator | 0.84 | 7 |
| Dickeya dadantii 3937 | 0.62 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | 0.55 | DDA3937_RS19785 | | gluconate operon transcriptional repressor GntR | low | > 74 |
| Dickeya dianthicola 67-19 | 0.61 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | 0.55 | HGI48_RS19900 | | gluconate operon transcriptional repressor GntR | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.61 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | 0.52 | HER17_RS01450 | | gluconate operon transcriptional repressor GntR | low | > 75 |
| Dickeya dianthicola ME23 | 0.61 | DZA65_RS18435 | | YggS family pyridoxal phosphate-dependent enzyme | 0.55 | DZA65_RS20970 | | gluconate operon transcriptional repressor GntR | low | > 75 |
| Klebsiella michiganensis M5al | 0.60 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | 0.51 | BWI76_RS26245 | | transcriptional regulator | low | > 92 |
| Enterobacter asburiae PDN3 | 0.59 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | 0.51 | EX28DRAFT_4274 | | transcriptional regulator, LacI family | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.59 | PagCFBP13505_RS16100 | | YggS family pyridoxal phosphate-dependent enzyme | 0.50 | PagCFBP13505_RS18155 | | gluconate operon transcriptional repressor GntR | low | > 74 |
| Pantoea sp. MT58 | 0.58 | IAI47_03595 | | YggS family pyridoxal phosphate-dependent enzyme | 0.52 | IAI47_01650 | | gluconate operon transcriptional repressor GntR | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.58 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.49 | GFF570 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 78 |
| Escherichia coli ECRC99 | 0.58 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | 0.52 | KEDOAH_11305 | gntR | gluconate operon transcriptional repressor GntR | — | — |
| Escherichia coli ECRC101 | 0.58 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | 0.52 | MCAODC_07365 | gntR | gluconate operon transcriptional repressor GntR | low | > 88 |
| Escherichia coli ECRC62 | 0.58 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | 0.52 | BNILDI_02870 | gntR | gluconate operon transcriptional repressor GntR | low | > 75 |
| Escherichia coli ECOR38 | 0.58 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | 0.52 | HEPCGN_15660 | gntR | gluconate operon transcriptional repressor GntR | low | > 88 |
| Escherichia coli Nissle 1917 | 0.58 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | 0.52 | ECOLIN_RS19675 | | gluconate operon transcriptional repressor GntR | 0.37 | 37 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.58 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | 0.52 | OHPLBJKB_00264 | | HTH-type transcriptional regulator GntR | low | > 74 |
| Escherichia fergusonii Becca | 0.58 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | 0.52 | EFB2_00382 | | HTH-type transcriptional regulator GntR | low | > 86 |
| Escherichia coli BW25113 | 0.58 | b2951 | yggS | predicted enzyme (NCBI) | 0.52 | b3438 | gntR | DNA-binding transcriptional repressor (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.58 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | 0.51 | NOLOHH_08635 | gntR | gluconate operon transcriptional repressor GntR | low | > 76 |
| Escherichia coli BL21 | 0.58 | ECD_02781 | | UPF0001 family protein, PLP-binding | 0.51 | ECD_03289 | | d-gluconate inducible gluconate regulon transcriptional repressor | low | > 61 |
| Escherichia coli ECRC102 | 0.58 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | 0.52 | NIAGMN_14605 | gntR | gluconate operon transcriptional repressor GntR | low | > 80 |
| Escherichia coli ECRC98 | 0.58 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | 0.52 | JDDGAC_20465 | gntR | gluconate operon transcriptional repressor GntR | low | > 87 |
| Escherichia coli ECRC100 | 0.58 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | 0.52 | OKFHMN_16835 | gntR | gluconate operon transcriptional repressor GntR | low | > 79 |
| Rahnella sp. WP5 | 0.57 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | 0.54 | EX31_RS05060 | | gluconate operon transcriptional repressor GntR | low | > 89 |
| Enterobacter sp. TBS_079 | 0.56 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | 0.52 | MPMX20_04319 | | HTH-type transcriptional regulator GntR | low | > 85 |
| Serratia liquefaciens MT49 | 0.56 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | 0.54 | IAI46_23965 | | gluconate operon transcriptional repressor GntR | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.55 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | 0.53 | LU632_RS19160 | gntR | gluconate operon transcriptional repressor GntR | low | > 74 |
| Erwinia tracheiphila HP pepo 2.2 | 0.55 | IJEDHG_03450 | | YggS family pyridoxal phosphate enzyme | 0.54 | IJEDHG_08040 | gntR | gluconate operon transcriptional repressor GntR | low | > 61 |
| Klebsiella pneumoniae MKP103 | 0.55 | KDGMDA_04615 | | YggS family pyridoxal phosphate enzyme | 0.51 | KDGMDA_07120 | | gluconate operon transcriptional repressor GntR | low | > 95 |
| Erwinia amylovora T8 | 0.55 | OLJFJH_08530 | | YggS family pyridoxal phosphate enzyme | 0.56 | OLJFJH_04280 | | gluconate operon transcriptional repressor GntR | low | > 58 |
| Herbaspirillum seropedicae SmR1 | 0.53 | HSERO_RS18995 | | hypothetical protein | 0.34 | HSERO_RS05460 | | LacI family transcription regulator | low | > 78 |
| Pseudomonas sp. DMC3 | 0.52 | GFF209 | | Pyridoxal phosphate homeostasis protein | 0.33 | GFF5268 | | HTH-type transcriptional regulator GntR | low | > 89 |
| Pseudomonas fluorescens GW456-L13 | 0.52 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.34 | PfGW456L13_1925 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.51 | Pf1N1B4_2342 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.35 | Pf1N1B4_558 | | Gluconate utilization system Gnt-I transcriptional repressor | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.51 | AO356_13425 | | hypothetical protein | 0.34 | AO356_05065 | | LacI family transcriptional regulator | low | > 104 |
| Burkholderia phytofirmans PsJN | 0.51 | BPHYT_RS03495 | | hypothetical protein | 0.32 | BPHYT_RS00410 | | LacI family transcription regulator | low | > 109 |
| Variovorax sp. OAS795 | 0.50 | ABID97_RS00250 | | YggS family pyridoxal phosphate-dependent enzyme | 0.29 | ABID97_RS01205 | | LacI family DNA-binding transcriptional regulator | — | — |
| Pseudomonas simiae WCS417 | 0.50 | PS417_26725 | | hypothetical protein | 0.33 | PS417_21990 | | LacI family transcriptional regulator | low | > 88 |
| Pseudomonas lactucae CFBP13502 | 0.50 | GEMAOFIL_05482 | | Pyridoxal phosphate homeostasis protein | 0.34 | GEMAOFIL_04536 | | HTH-type transcriptional regulator GntR | low | > 93 |
| Pseudomonas segetis P6 | 0.50 | MPMX49_00611 | | Pyridoxal phosphate homeostasis protein | 0.33 | MPMX49_02373 | | HTH-type transcriptional regulator GntR | low | > 75 |
| Acidovorax sp. GW101-3H11 | 0.50 | Ac3H11_4474 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.29 | Ac3H11_3230 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 79 |
| Cupriavidus basilensis FW507-4G11 | 0.50 | RR42_RS17355 | | hypothetical protein | 0.26 | RR42_RS22645 | | GntR family transcriptional regulator | low | > 128 |
| Variovorax sp. SCN45 | 0.50 | GFF3744 | | Pyridoxal phosphate-containing protein YggS | 0.30 | GFF7257 | | KEGG: LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor | — | — |
| Pseudomonas sp. BP01 | 0.50 | JOY50_RS20910 | | YggS family pyridoxal phosphate-dependent enzyme | 0.31 | JOY50_RS23605 | | LacI family DNA-binding transcriptional regulator | low | > 84 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.49 | H281DRAFT_04680 | | hypothetical protein | 0.30 | H281DRAFT_05920 | | transcriptional regulator, LacI family | low | > 103 |
| Pseudomonas fluorescens FW300-N2E2 | 0.49 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.34 | Pf6N2E2_2865 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS26595 | | YggS family pyridoxal phosphate-dependent enzyme | 0.29 | QEN71_RS13585 | | LacI family DNA-binding transcriptional regulator | low | > 153 |
| Pseudomonas putida KT2440 | 0.49 | PP_5094 | | putative enzyme with PLP binding domain | 0.31 | PP_3415 | | Transcriptional regulator, LacI family | low | > 96 |
| Alteromonas macleodii MIT1002 | 0.49 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | 0.31 | MIT1002_03475 | | Gluconate utilization system GNT-I transcriptional repressor | low | > 70 |
| Pseudomonas stutzeri RCH2 | 0.49 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | 0.34 | Psest_2126 | | Transcriptional regulators | low | > 67 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.49 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.32 | Psyr_3336 | | transcriptional regulator, LacI family | low | > 86 |
| Pseudomonas fluorescens SBW25-INTG | 0.49 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.34 | PFLU_RS23595 | | LacI family DNA-binding transcriptional regulator | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.49 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.32 | Psyr_3336 | | transcriptional regulator, LacI family | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.49 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.34 | PFLU_RS23595 | | LacI family DNA-binding transcriptional regulator | low | > 109 |
| Pseudomonas sp. RS175 | 0.49 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | 0.34 | PFR28_00593 | | HTH-type transcriptional regulator GntR | low | > 88 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.49 | GFF2722 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.30 | GFF5509 | | Gluconate utilization system Gnt-I transcriptional repressor | low | > 90 |
| Pseudomonas aeruginosa PA14 | 0.47 | IKLFDK_23450 | | Pyridoxal phosphate homeostasis protein | 0.36 | IKLFDK_11375 | | LacI family DNA-binding transcriptional regulator GntR | 0.34 | 42 |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_08160 | | hypothetical protein | 0.33 | AO353_03255 | | LacI family transcriptional regulator | low | > 101 |
| Pseudomonas sp. SVBP6 | 0.47 | COO64_RS13000 | | YggS family pyridoxal phosphate-dependent enzyme | 0.34 | COO64_RS25590 | | LacI family DNA-binding transcriptional regulator | low | > 93 |
| Ralstonia sp. UNC404CL21Col | 0.46 | ABZR87_RS01225 | | YggS family pyridoxal phosphate-dependent enzyme | 0.26 | ABZR87_RS18255 | | LacI family DNA-binding transcriptional regulator | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.45 | RS_RS13435 | | YggS family pyridoxal phosphate-dependent enzyme | 0.26 | RS_RS24865 | | LacI family DNA-binding transcriptional regulator | low | > 80 |
| Ralstonia solanacearum UW163 | 0.44 | UW163_RS08050 | | YggS family pyridoxal phosphate-dependent enzyme | 0.24 | UW163_RS16860 | | GntR family transcriptional regulator | — | — |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS11725 | | YggS family pyridoxal phosphate-dependent enzyme | 0.26 | RPSI07_RS07575 | | LacI family DNA-binding transcriptional regulator | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.44 | RALBFv3_RS05575 | | YggS family pyridoxal phosphate-dependent enzyme | 0.24 | RALBFv3_RS16125 | | GntR family transcriptional regulator | low | > 76 |
| Azospirillum brasilense Sp245 | 0.32 | AZOBR_RS01870 | | alanine racemase | 0.31 | AZOBR_RS15720 | | LacI family transcription regulator | — | — |
| Xanthobacter sp. DMC5 | 0.31 | GFF1427 | | Pyridoxal phosphate homeostasis protein | 0.31 | GFF1533 | | HTH-type transcriptional regulator GntR | — | — |
| Agrobacterium fabrum C58 | 0.31 | Atu2747 | | hypothetical protein | 0.28 | Atu4685 | | LacI family transcriptional regulator | low | > 89 |
| Azospirillum sp. SherDot2 | 0.30 | MPMX19_00050 | | Pyridoxal phosphate homeostasis protein | 0.29 | MPMX19_05332 | | HTH-type transcriptional regulator GntR | 0.65 | 85 |
| Rhizobium sp. OAE497 | 0.29 | ABIE40_RS19180 | | YggS family pyridoxal phosphate-dependent enzyme | 0.25 | ABIE40_RS04445 | | LacI family DNA-binding transcriptional regulator | — | — |
| Dinoroseobacter shibae DFL-12 | 0.29 | Dshi_0042 | | alanine racemase domain protein (RefSeq) | 0.27 | Dshi_3322 | | transcriptional regulator, LacI family (RefSeq) | low | > 64 |
| Castellaniella sp019104865 MT123 | 0.29 | ABCV34_RS02955 | | YggS family pyridoxal phosphate-dependent enzyme | 0.26 | ABCV34_RS12285 | | LacI family DNA-binding transcriptional regulator | low | > 48 |
| Sinorhizobium meliloti 1021 | 0.28 | SMc02812 | | hypothetical protein | 0.29 | SM_b20667 | | LacI family transcriptional regulator | low | > 103 |
| Phaeobacter inhibens DSM 17395 | 0.27 | PGA1_c33360 | | putative alanine racemase | 0.28 | PGA1_c33870 | | putative HTH-type transcriptional regulator GntR | low | > 62 |
Not shown: 46 genomes with orthologs for CSW01_02455 only; 0 genomes with orthologs for CSW01_01485 only